Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1009538

https://doi.org/10.1371/journal.pgen.1009538

Transcriptome-wide investigation of stop codon readthrough in Saccharomyces cerevisiae

Cited by: 16
Author(s): Kotchaphorn Mangkalaphiban, Feng He, Robin Ganesan, Chan Wu, Richard E. Baker, Allan Jacobson
Published: over 3 years ago

Software Mentions 15

cran: caret
Classification and Regression Training
Papers that mentioned: 630
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
cran: rcompanion
Functions to Support Extension Education Program Evaluation
Papers that mentioned: 149
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: seqinr
Biological Sequences Retrieval and Analysis
Papers that mentioned: 110
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: caret
A Python Interface to Asterisk
Papers that mentioned: 630
pypi: cufflinks
Productivity Tools for Plotly + Pandas
Papers that mentioned: 415
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
pypi: table
Two-dimensional tables backed by Numpy with named rows and columns.
Papers that mentioned: 48