Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-020-00861-6

https://doi.org/10.1186/s40168-020-00861-6

Reservoirs of antimicrobial resistance genes in retail raw milk

Cited by: 41
Author(s): Jinxin Liu, Yongxu Zhu, Michele Jay-Russell, Danielle G. Lemay, David A. Mills
Published: over 4 years ago

Software Mentions 13

bioconductor: decontam

Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Papers that mentioned: 76

cran: FSA

Simple Fisheries Stock Assessment Methods
Papers that mentioned: 225

cran: lme4

Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267

cran: lsmeans

Least-Squares Means
Papers that mentioned: 758

cran: multcomp

Simultaneous Inference in General Parametric Models
Papers that mentioned: 1,558

cran: PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292

cran: randomForest

Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447

cran: SAM

Sparse Additive Modelling
Papers that mentioned: 4,566

cran: vegan

Community Ecology Package
Papers that mentioned: 6,903

pypi: bmtools

System informations
Papers that mentioned: 1

pypi: decontam

Decontaminate paired-end DNA sequencing data
Papers that mentioned: 76

pypi: FSA

Finite State Automaton library
Papers that mentioned: 225

pypi: qiime

Quantitative Insights Into Microbial Ecology
Papers that mentioned: 157