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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s40168-020-00861-6

https://doi.org/10.1186/s40168-020-00861-6

Reservoirs of antimicrobial resistance genes in retail raw milk

Cited by: 41
Author(s): Jinxin Liu, Yongxu Zhu, Michele Jay-Russell, Danielle G. Lemay, David A. Mills
Published: about 5 years ago

Software Mentions 13

bioconductor: decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Papers that mentioned: 76
Very Likely Science (100)
cran: FSA
Simple Fisheries Stock Assessment Methods
Papers that mentioned: 225
Very Likely Science (100)
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
Very Likely Science (100)
cran: lsmeans
Least-Squares Means
Papers that mentioned: 758
Very Likely Science (83)
cran: multcomp
Simultaneous Inference in General Parametric Models
Papers that mentioned: 1,558
Very Likely Science (75)
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
Very Likely Science (85)
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
Very Likely Science (100)
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
Very Likely Science (85)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)
pypi: bmtools
System informations
Papers that mentioned: 1
Very Likely Science (65)
pypi: decontam
Decontaminate paired-end DNA sequencing data
Papers that mentioned: 76
Very Likely Science (75)
pypi: FSA
Finite State Automaton library
Papers that mentioned: 225
Very Likely Science (80)
pypi: qiime
Quantitative Insights Into Microbial Ecology
Papers that mentioned: 157
Very Likely Science (90)