Ecosyste.ms: Papers

10.1371/journal.pone.0239842

A spatiotemporal comparison of length-at-age in the coral reef fish Acanthurus nigrofuscus between marine reserves and fished reefs
Cited by: 1
Author(s): Mathias T. Cramer, Robert Y. Fidler, Louis Penrod, Jessica Carroll, Ralph G. Turingan
Software Mentions: 20
Published: about 4 years ago

10.3389/fmicb.2019.01726

Diversity, Distribution and Co-occurrence Patterns of Bacterial Communities in a Karst Cave System
Cited by: 66
Author(s): Hai-Zhen Zhu, Z.F. Zhang, Nan Zhou, Cheng‐Ying Jiang, Baojun Wang, Lei Cai, Shuang‐Jiang Liu
Software Mentions: 17
Published: over 5 years ago

10.1371/journal.pone.0248185

Gut microbiota profiles in diarrheic patients with co-occurrence of Clostridioides difficile and Blastocystis
Cited by: 15
Author(s): Laura Vega, Giovanny Herrera, Marina Muñoz, Manuel A. Patarroyo, Jenny G. Maloney, Mónica Santı́n, Juan David Ramírez
Software Mentions: 14
Published: over 3 years ago

10.1007/s43032-020-00438-6

Changes in the Vaginal Microbiome during the Pregnancy to Postpartum Transition
Cited by: 24
Author(s): Kenetta L. Nunn, Steven S. Witkin, Gudrun Schneider, Allison Boester, Dimitrios Nasioudis, Evelyn Minis, Karol Gliniewicz, Larry J. Forney
Software Mentions: 14
Published: almost 4 years ago

10.3389/fmicb.2021.689262

Monitoring of Antimicrobial Resistance to Aminoglycosides and Macrolides in Campylobacter coli and Campylobacter jejuni From Healthy Livestock in Spain (2002–2018)
Cited by: 9
Author(s): Vicente Lopez-Chavarrias, María Ugarte‐Ruiz, Carmen Bárcena, Adolfo Olarra, María Teresa Antonio García, José Luís Saez, Cristina de Frutos, Tania Serrano, I. Abad Perez, M. Moreno, Lucas Domı́nguez, Julio Álvarez
Software Mentions: 13
Published: over 3 years ago

10.1002/ece3.6520

Growth and survival of the superorganism: Ant colony macronutrient intake and investment
Cited by: 3
Author(s): Yeisson Gutiérrez, Tung Phung, Harald Mumma, Arden Ambrose‐Winters, Christoph Scherber, Chris R. Smith
Software Mentions: 13
Published: over 4 years ago

10.1186/s40168-020-00861-6

Reservoirs of antimicrobial resistance genes in retail raw milk
Cited by: 41
Author(s): Jinxin Liu, Yongxu Zhu, Michele Jay-Russell, Danielle G. Lemay, David A. Mills
Software Mentions: 13
Published: over 4 years ago

10.1371/journal.pone.0236305

Defining the sediment prokaryotic communities of the Indian River Lagoon, FL, USA, an Estuary of National Significance
Cited by: 7
Author(s): David J. Bradshaw, Nicholas J. Dickens, John H. Trefry, Peter J. McCarthy
Software Mentions: 12
Published: about 4 years ago

10.3389/fmed.2021.644724

Exploring the Clinical Characteristics of COVID-19 Clusters Identified Using Factor Analysis of Mixed Data-Based Cluster Analysis
Cited by: 10
Author(s): Han Liang, Pan Shen, Jiahui Yan, Yao Huang, Xin Ba, Wei Chen Lin, Hui Wang, Ying Huang, Kai Qin, Yu Wei, Zhe Chen, Shenghao Tu
Software Mentions: 12
Published: over 3 years ago

10.1038/s41408-019-0199-3

Deciphering the chronology of copy number alterations in Multiple Myeloma
Cited by: 35
Author(s): Anıl Aktaş Samur, Stéphane Minvielle, Masood A. Shammas, Mariateresa Fulciniti, Florence Magrangeas, Paul G. Richardson, Philippe Moreau, Michel Attal, Kenneth C. Anderson, Giovanni Parmigiani, Hervé Avet‐Loiseau, Nikhil C. Munshi, Mehmet K. Samur
Software Mentions: 11
Published: over 5 years ago

10.1371/journal.pone.0242331

Ocean warming affected faunal dynamics of benthic invertebrate assemblages across the Toarcian Oceanic Anoxic Event in the Iberian Basin (Spain)
Cited by: 4
Author(s): Veronica Piazza, Clemens V. Ullmann, Martin Aberhan
Software Mentions: 11
Published: almost 4 years ago

10.3389/fpls.2020.01132

Intra and Inter-specific Variability of Salt Tolerance Mechanisms in Diospyros Genus
Cited by: 3
Author(s): Francisco Gil-Muñoz, Juan G. Pérez-Pérez, Ana Quiñones, María del Mar Naval, M. L. Badenes
Software Mentions: 11
Published: over 4 years ago

10.3389/fpls.2020.599228

Hormopriming to Mitigate Abiotic Stress Effects: A Case Study of N9-Substituted Cytokinin Derivatives With a Fluorinated Carbohydrate Moiety
Cited by: 17
Author(s): Magdaléna Bryksová, Andrea Hybenová, Alba E. Hernándiz, Ondřej Novák, Aleš Pěnčík, Lukáš Spíchal, Nuria De Diego, Karel Doležal
Software Mentions: 11
Published: almost 4 years ago

10.1038/s41598-020-72369-w

Connectivity and population structure of albacore tuna across southeast Atlantic and southwest Indian Oceans inferred from multidisciplinary methodology
Cited by: 10
Author(s): Natacha Nikolic, Iratxe Montes, Maxime Lalire, Alexis Puech, Nathalie Bodin, Sophie Arnaud‐Haond, Sven E. Kerwath, Emmanuel Corse, Philippe Gaspar, Stéphanie Hollanda, Jérôme Bourjea, Wendy West, Sylvain Bonhommeau
Software Mentions: 10
Published: about 4 years ago

10.1128/mSphere.00334-20

Extreme Viral Partitioning in a Marine-Derived High Arctic Lake
Cited by: 13
Author(s): Myriam Labbé, Catherine Girard, Warwick F. Vincent, Alexander I. Culley
Software Mentions: 10
Published: over 4 years ago

10.1038/s41598-021-86272-5

Distributions of Arctic and Northwest Atlantic killer whales inferred from oxygen isotopes
Cited by: 0
Author(s): Cory J. D. Matthews, Fred J. Longstaffe, James S. Lawson, Steven H. Ferguson
Software Mentions: 10
Published: over 3 years ago

10.3389/fmolb.2021.649363

Weighted Gene Co-expression Network Analysis Identifies CALD1 as a Biomarker Related to M2 Macrophages Infiltration in Stage III and IV Mismatch Repair-Proficient Colorectal Carcinoma
Cited by: 7
Author(s): Hongliang Zheng, Yuge Bai, Jingui Wang, Shanwen Chen, Junling Zhang, Jing Zhu, Yucun Liu, Xin Wang
Software Mentions: 10
Published: over 3 years ago

10.3389/fmicb.2019.02476

Characterization of the Mycobiome of the Seagrass, Zostera marina, Reveals Putative Associations With Marine Chytrids
Cited by: 29
Author(s): Cassandra L. Ettinger, Jonathan A. Eisen
Software Mentions: 10
Published: about 5 years ago

10.1111/eva.13296

Ageing European lobsters (<i>Homarus gammarus</i>) using DNA methylation of evolutionarily conserved ribosomal DNA
Cited by: 8
Author(s): Eleanor A. Fairfield, David S. Richardson, Carly L. Daniels, Christopher L. Butler, Ewen Bell, Martin I. Taylor
Software Mentions: 9
Published: about 3 years ago

10.3389/fphys.2018.01945

A Quantitative Comparison of Clinically Employed Parameters in the Assessment of Acute Cerebral Ischemia Using Dynamic Susceptibility Contrast Magnetic Resonance Imaging
Cited by: 1
Author(s): Christian Našel, Uros Klickovic, Heike-Marie Kührer, Kersten Villringer, Jochen B. Fiebach, Arno Villringer, Ewald Moser
Software Mentions: 9
Published: almost 6 years ago

10.1371/journal.pone.0253954

Assessment of early COVID-19 compliance to and challenges with public health and social prevention measures in the Kingdom of Eswatini, using an online survey
Cited by: 17
Author(s): Sara Padidar, Shell-may Liao, Siphesihle Magagula, Themb’a A. M. Mahlaba, Nhlanhla Nhlabatsi, Stephanie Lukas
Software Mentions: 9
Published: over 3 years ago

10.3390/ijms21093139

The Dark Side of Orchid Symbiosis: Can Tulasnella calospora Decompose Host Tissues?
Cited by: 21
Author(s): Martino Adamo, Matteo Chialva, Jacopo Calevo, Silvia De Rose, Mariangela Girlanda, Silvia Perotto, Raffaella Balestrini
Software Mentions: 9
Published: over 4 years ago

10.1111/evo.13072

Niche divergence facilitated by fine‐scale ecological partitioning in a recent cichlid fish adaptive radiation
Cited by: 37
Author(s): Antonia G. P. Ford, Lukas Rüber, Jason Newton, Kanchon K. Dasmahapatra, J.D. Balarin, Kristoffer Bruun, Julia J. Day
Software Mentions: 9
Published: about 8 years ago

10.1038/s41598-020-61932-0

Low FVC/TLC in Preserved Ratio Impaired Spirometry (PRISm) is associated with features of and progression to obstructive lung disease
Cited by: 20
Author(s): Spyridon Fortis, Alejandro P. Comellas, Victor Kim, Richard Casaburi, John E. Hokanson, James D. Crapo, Edwin K. Silverman, Emily S. Wan
Software Mentions: 9
Published: over 4 years ago

10.18632/aging.203379

Integration of segmented regression analysis with weighted gene correlation network analysis identifies genes whose expression is remodeled throughout physiological aging in mouse tissues
Cited by: 8
Author(s): Margarida Ferreira, Stephany Francisco, Ana Raquel Soares, Ana Nobre, Miguel Pinheiro, Andreia Reis, Sonya Neto, Ana João Rodrigues, Nuno Sousa, Gabriela Moura, Manuel A. S. Santos
Software Mentions: 9
Published: over 3 years ago

10.3390/microorganisms9050915

Lactobacillus reuteri Colonisation of Extremely Preterm Infants in a Randomised Placebo-Controlled Trial
Cited by: 13
Author(s): Johanne E. Spreckels, Erik Wejryd, Giovanna Marchini, Baldvin Jónsson, Dylan de Vries, Maria C. Jenmalm, Eva Landberg, Eva Sverremark-Ekström, Magalí Martí, Thomas Abrahamsson
Software Mentions: 8
Published: over 3 years ago

10.1002/evl3.110

Comparative genomics of 10 new<i>Caenorhabditis</i>species
Cited by: 105
Author(s): Lewis Stevens, Marie‐Anne Félix, Toni Beltran, Christian Braendle, Carlos Caurcel, Sarah Fausett, David Fitch, Lise Frézal, Charlie Gosse, Taniya Kaur, Karin Kiontke, Matthew D. Newton, Luke M. Noble, Aurélien Richaud, Matthew V. Rockman, Walter Sudhaus, Mark Blaxter
Software Mentions: 8
Published: over 5 years ago

10.3390/microorganisms8040485

Characterization of the Duodenal Mucosal Microbiome in Obese Adult Subjects by 16S rRNA Sequencing
Cited by: 33
Author(s): Carmela Nardelli, Ilaria Granata, Valeria D’Argenio, Salvatore Tramontano, Debora Compare, Mario Rosario Guarracino, Gerardo Nardone, Vincenzo Pilone, Lucia Sacchetti
Software Mentions: 8
Published: over 4 years ago

10.3390/jof6040372

Monitoring and Surveillance of Aerial Mycobiota of Rice Paddy through DNA Metabarcoding and qPCR
Cited by: 11
Author(s): S. Franco Ortega, Ilario Ferrocino, Ian Adams, Simone Silvestri, D. Spadaro, M. L. Gullino, Neil Boonham
Software Mentions: 8
Published: almost 4 years ago

10.1038/s41598-020-59524-z

Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach
Cited by: 16
Author(s): Ruibo Cai, Ehsan Kayal, Catharina Alves‐de‐Souza, Estelle Bigeard, Erwan Corre, Christian Jeanthon, Dominique Marie, Betina M. Porcel, Raffaele Siano, Jeremy Szymczak, Matthias Wolf, Laure Guillou
Software Mentions: 8
Published: almost 5 years ago

10.1186/s42523-021-00111-6

Characterization of the gut microbiome in wild rocky mountainsnails (Oreohelix strigosa)
Cited by: 2
Author(s): Bridget Chalifour, Jingchun Li
Software Mentions: 8
Published: over 3 years ago

10.3390/insects11020073

Influence of Temperature on the Interaction for Resource Utilization between Fall Armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae), and a Community of Lepidopteran Maize Stemborers Larvae
Cited by: 15
Author(s): Bonoukpoè Mawuko Sokame, François Rebaudo, Peter Malusi, Sevgan Subramanian, Dora Kilalo, Gérald Juma, Paul‐André Calatayud
Software Mentions: 8
Published: almost 5 years ago

10.3390/ani10050889

Combination of Bacillus licheniformis and Salinomycin: Effect on the Growth Performance and GIT Microbial Populations of Broiler Chickens
Cited by: 15
Author(s): Jacek Trela, Bartosz Kierończyk, Veerle Hautekiet, Damian Józefiak
Software Mentions: 8
Published: over 4 years ago

10.1523/ENEURO.0339-19.2020

Function, Innervation, and Neurotransmitter Signaling in Mice Lacking Type-II Taste Cells
Cited by: 16
Author(s): Eric D. Larson, Aurélie Vandenbeuch, Catherine B. Anderson, Sue C. Kinnamon
Software Mentions: 8
Published: almost 5 years ago

10.1038/s41598-018-26332-5

Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majority
Cited by: 47
Author(s): John K. Pearman, Matthieu Leray, Rodrigo Villalobos, Ryuji J. Machida, Michael L. Berumen, Nancy­ Knowlton­, Susana Carvalho
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0239639

Monsters with a shortened vertebral column: A population phenomenon in radiating fish Labeobarbus (Cyprinidae)
Cited by: 9
Author(s): А. С. Голубцов, Nikolai B. Korostelev, Б. А. Левин
Software Mentions: 8
Published: almost 4 years ago

10.1371/journal.pbio.1000343

Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species
Cited by: 190
Author(s): Robert K. Bradley, Xiaoyong Li, Cole Trapnell, Stuart M. Davidson, Lior Pachter, Hou Cheng Chu, Leath A. Tonkin, Mark D. Biggin, Michael B. Eisen
Software Mentions: 8
Published: over 14 years ago

10.1098/rsos.210172

Assessing urinary odours across the oestrous cycle in a mouse model using portable and benchtop gas chromatography-mass spectrometry
Cited by: 4
Author(s): Jia Tang, Alice C. Poirier, Gwen Duytschaever, Laís Alves Antonio Moreira, Omer Nevo, Amanda D. Melin
Software Mentions: 7
Published: about 3 years ago

10.7717/peerj.960

Swabs to genomes: a comprehensive workflow
Cited by: 30
Author(s): Madison I. Dunitz, Jenna M. Lang, Guillaume Jospin, Aaron E. Darling, Jonathan A. Eisen, David A. Coil
Software Mentions: 7
Published: over 9 years ago

10.1038/s41598-020-69273-8

Anti-biofilm efficacy of a medieval treatment for bacterial infection requires the combination of multiple ingredients
Cited by: 15
Author(s): Jessica Furner-Pardoe, Blessing O. Anonye, Ricky Cain, John Moat, Catharine A. Ortori, Christina Lee, David A. Barrett, Christophe Corre, Freya Harrison
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0245989

Effect of pre-operative bicarbonate infusion on maternal and perinatal outcomes among women with obstructed labour in Mbale hospital: A double blind randomized controlled trial
Cited by: 5
Author(s): Milton W. Musaba, Julius Wandabwa, Grace Ndeezi, Andrew Weeks, David Mukunya, Paul Waako, Victoria Nankabirwa, Kenneth Mugabe, Daniel Semakula, James K Tumwine, Justus K. Barageine
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12284-019-0305-y

Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis
Cited by: 19
Author(s): S. Ghosal, Carlos Casal, Fergie Ann Quilloy, Endang M. Septiningsih, Merlyn S. Mendioro, Shalabh Dixit
Software Mentions: 7
Published: over 5 years ago

10.3390/molecules26154538

Interstrain Variability of Human Vaginal Lactobacillus crispatus for Metabolism of Biogenic Amines and Antimicrobial Activity against Urogenital Pathogens
Cited by: 8
Author(s): Scarlett Puebla-Barragan, Emiley Watson, Charlotte van der Veer, John A. Chmiel, Charles Carr, Jeremy P. Burton, Mark W. Sumarah, Remco Kort, Gregor Reid
Software Mentions: 7
Published: over 3 years ago

10.3390/ani11030674

Assessment of Performance and Some Welfare Indicators of Cows in Vietnamese Smallholder Dairy Farms
Cited by: 5
Author(s): Nguyen N. Bang, Nguyen V. Chanh, Nguyễn Xuân Trạch, Duong Nguyen Khang, Ben J. Hayes, J. B. Gaughan, Russell E. Lyons, Nguyễn Thanh Hải, David McNeill
Software Mentions: 7
Published: over 3 years ago

10.1128/mBio.00905-21

Functional and Comparative Analysis of Centromeres Reveals Clade-Specific Genome Rearrangements in <i>Candida auris</i> and a Chromosome Number Change in Related Species
Cited by: 10
Author(s): Aswathy Narayanan, Rakesh Netha Vadnala, Promit Ganguly, Pavitra Selvakumar, Shivaprakash M Rudramurthy, Rajendra Prasad, Arunaloke Chakrabarti, Rahul Siddharthan, Kaustuv Sanyal
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0242486

Altered feeding behavior and immune competence in paper wasps: A case of parasite manipulation?
Cited by: 3
Author(s): L. Beani, Marta Mariotti Lippi, Nadia Mulinacci, Fabio Manfredini, Lorenzo Cecchi, C. Giuliani, Corrado Tani, Niccolò Meriggi, Duccio Cavalieri, Federico Cappa
Software Mentions: 7
Published: almost 4 years ago

10.3390/microorganisms8010061

Prenatal Transfer of Gut Bacteria in Rock Pigeon
Cited by: 14
Author(s): Maurine W. Dietz, Joana Falcão Salles, Bin‐Yan Hsu, Cor Dijkstra, Ton G. G. Groothuis, Marco van der Velde, Yvonne I. Verkuil, B. Irene Tieleman
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0083984

Characterizing the Infection-Induced Transcriptome of Nasonia vitripennis Reveals a Preponderance of Taxonomically-Restricted Immune Genes
Cited by: 34
Author(s): Timothy B. Sackton, John H. Werren, Andrew G. Clark
Software Mentions: 7
Published: almost 11 years ago

10.3389/fpls.2020.572112

Expression of Putative Defense Responses in Cannabis Primed by Pseudomonas and/or Bacillus Strains and Infected by Botrytis cinerea
Cited by: 16
Author(s): Carole Balthazar, Gabrielle Cantin, Amy Novinscak, David L. Joly, Martin Filion
Software Mentions: 7
Published: almost 4 years ago

10.3389/fvets.2019.00499

Developing Diagnostic Frameworks in Veterinary Behavioral Medicine: Disambiguating Separation Related Problems in Dogs
Cited by: 25
Author(s): Luciana Santos de Assis, Raquel Matos, Thomas W. Pike, Ohp Burman, Daniel S. Mills
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0248398

Productive wetlands restored for carbon sequestration quickly become net CO2 sinks with site-level factors driving uptake variability
Cited by: 27
Author(s): Amy Valach, Kuno Kasak, Kyle S. Hemes, Tyler L. Anthony, Iryna Dronova, Sophie Taddeo, Whendee L. Silver, Daphne Szutu, Joseph Verfaillie, Dennis Baldocchi
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-021-88005-0

Division of labor in work shifts by leaf-cutting ants
Cited by: 0
Author(s): Pedro B. Constantino, Verónica Sandra Valentinuzzi, André Frazão Helene
Software Mentions: 6
Published: over 3 years ago

10.7717/peerj.3674

Microbiome succession during ammonification in eelgrass bed sediments
Cited by: 21
Author(s): Cassandra L. Ettinger, Susan L. Williams, Jessica M. Abbott, John J. Stachowicz, Jonathan A. Eisen
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-020-70198-5

Computational flow cytometry of planktonic populations for the evaluation of microbiological-control programs in district cooling plants
Cited by: 0
Author(s): James McElhinney, Aurélie Mawart, Ruba Alkaabi, H. S. S. Abdelsamad, Afnan Mansour, Ayesha Hasan
Software Mentions: 6
Published: over 4 years ago

10.7717/peerj.5960

Skin bacterial diversity is higher on lizards than sympatric frogs in tropical Australia
Cited by: 11
Author(s): Chava L. Weitzman, Karen S. Gibb, Keith A. Christian
Software Mentions: 6
Published: about 6 years ago

10.3389/fimmu.2018.02408

Incubation of Immune Cell Grafts With MAX.16H5 IgG1 Anti-Human CD4 Antibody Prolonged Survival After Hematopoietic Stem Cell Transplantation in a Mouse Model for Fms Like Tyrosine Kinase 3 Positive Acute Myeloid Leukemia
Cited by: 2
Author(s): Nadja Hilger, Claudia Mueller, Lilly Stahl, Anne M Mueller, Bianca Zoennchen, Sarah Dluczek, Christoph Halbich, Claudia Wickenhauser, Dennis Gerloff, Antje Wurm, Gerhard Behre, Anna Kretschmer, Frank Stephan
Software Mentions: 6
Published: about 6 years ago

10.3389/fcell.2021.653305

Single Cell Transcriptomic Analyses Reveal the Impact of bHLH Factors on Human Retinal Organoid Development
Cited by: 9
Author(s): Xiangmei Zhang, Igor Mandric, Kevin Nguyen, Thao T. T. Nguyen, Matteo Pellegrini, James C. R. Grove, Steven Barnes, Xian-Jie Yang
Software Mentions: 6
Published: over 3 years ago

10.1186/s12864-020-06990-4

Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies
Cited by: 13
Author(s): Sara Lado, Jean P. Elbers, Mark F. Rogers, José Melo‐Ferreira, Adiya Yadamsuren, Jukka Corander, Petr Hořín, Pamela A. Burger
Software Mentions: 6
Published: about 4 years ago

10.1186/s40168-020-0783-6

Dietary effects on gut microbiota of the mesquite lizard Sceloporus grammicus (Wiegmann, 1828) across different altitudes
Cited by: 36
Author(s): Nina Montoya‐Ciriaco, Selene Gómez-Acata, Ligia Catalina Muñoz-Arenas, Luc Dendooven, Arturo Estrada–Torres, Aníbal H. Díaz de la Vega‐Pérez, Yendi E. Navarro‐Noya
Software Mentions: 6
Published: almost 5 years ago

10.1038/s42003-021-02057-6

Inhibition of a nutritional endosymbiont by glyphosate abolishes mutualistic benefit on cuticle synthesis in Oryzaephilus surinamensis
Cited by: 19
Author(s): Julian Simon Thilo Kiefer, Suvdanselengee Batsukh, Eugen Bauer, Bin Hirota, Benjamin Weiß, Jürgen C. Wierz, Takema Fukatsu, Martin Kaltenpoth, Tobias Engl
Software Mentions: 6
Published: over 3 years ago

10.1093/conphys/coaa046

Heat, health and hatchlings: associations of in situ nest temperatures with morphological and physiological characteristics of loggerhead sea turtle hatchlings from Florida
Cited by: 19
Author(s): Kelsey Alexandra Fleming, Justin R. Perrault, Nicole I. Stacy, Christina M. Coppenrath, Alison M. Gainsbury
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0161990

Pig Abattoir Inspection Data: Can It Be Used for Surveillance Purposes?
Cited by: 29
Author(s): Carla Correia‐Gomes, Richard P. Smith, Jude Eze, Madeleine K. Henry, George J. Gunn, Susanna Williamson, Sue C. Tongue
Software Mentions: 6
Published: about 8 years ago

10.1128/mSystems.00550-21

Competitiveness for Nodule Colonization in Sinorhizobium meliloti: Combined <i>In Vitro</i> -Tagged Strain Competition and Genome-Wide Association Analysis
Cited by: 5
Author(s): Agnese Bellabarba, Giovanni Bacci, Francesca Decorosi, Erki Aun, Elisa Azzarello, Maido Remm, Luciana Giovannetti, Carlo Viti, Alessio Mengoni, Francesco Pini
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.ppat.1009539

Infection with endosymbiotic Spiroplasma disrupts tsetse (Glossina fuscipes fuscipes) metabolic and reproductive homeostasis
Cited by: 8
Author(s): Jae Hak Son, Brian L. Weiss, Daniela Schneider, Kiswend-Sida Mikhailou Dera, Fabian Gstöttenmayer, Robert Opiro, Richard Echodu, Norah P. Saarman, Geoffrey M. Attardo, Maria G Onyango, Adly M. M. Abd-Alla, Serap Aksoy
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pbio.1001229

Alternative Splicing of RNA Triplets Is Often Regulated and Accelerates Proteome Evolution
Cited by: 91
Author(s): Robert K. Bradley, Jason J. Merkin, Nicole Lambert, Christopher B. Burge
Software Mentions: 5
Published: almost 13 years ago

10.7717/peerj.8372

Sea whip coral <i>Leptogorgia virgulata</i> in the Mid-Atlantic Bight: Colony complexity, age, and growth
Cited by: 3
Author(s): Rebecca P Wenker, Bradley G. Stevens
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2021.666010

Differential Impact of Plant Secondary Metabolites on the Soil Microbiota
Cited by: 23
Author(s): Vadim Schütz, Katharina Frindte, Jiaxin Cui, Pengfan Zhang, Stéphane Hacquard, Paul Schulze‐Lefert, Claudia Knief, Margot Schulz, Peter Dörmann
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-86926-4

Assessing the effectiveness of two intervention methods for stony coral tissue loss disease on Montastraea cavernosa
Cited by: 32
Author(s): Erin N. Shilling, Ian R. Combs, Joshua D. Voss
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-019-48419-3

Morphological differences between coastal bottlenose dolphin (Tursiops aduncus) populations identified using non-invasive stereo-laser photogrammetry
Cited by: 21
Author(s): Martin van Aswegen, Fredrik Christiansen, J. R. Symons, Janet Mann, Krista Nicholson, Kate R. Sprogis, Lars Bejder
Software Mentions: 5
Published: over 5 years ago

10.1021/acs.est.1c02308

Sediment Remediation with New Composite Sorbent Amendments to Sequester Phosphorus, Organic Contaminants, and Metals
Cited by: 13
Author(s): Johan Wikström, Stefano Bonaglia, Robert Rämö, Gunno Renman, Jakob Walve, Johanna Hedberg, Jonas S. Gunnarsson
Software Mentions: 5
Published: about 3 years ago

10.1186/1471-2164-14-100

A hybrid next generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover
Cited by: 19
Author(s): Istvàn Nagy, Susanne Barth, Jeanne Mehenni-Ciz, Michael T. Abberton, Dan Milbourne
Software Mentions: 5
Published: almost 12 years ago

10.1002/ece3.2601

Evaluating citizen science data for forecasting species responses to national forest management
Cited by: 29
Author(s): Louise Mair, Philip J. Harrison, Mari Jönsson, Swantje Löbel, Jenni Nordén, Juha Siitonen, Tomas Lämås, Anders Lundström, Tord Snäll
Software Mentions: 5
Published: almost 8 years ago

10.1098/rsos.171087

A framework for estimating the determinants of spatial and temporal variation in vital rates and inferring the occurrence of unobserved extreme events
Cited by: 6
Author(s): Simone Vincenzi, Dušan Jeseňsek, Alain J. Crivellì
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms9071470

Changes in Soil Microbial Communities across an Urbanization Gradient: A Local-Scale Temporal Study in the Arid Southwestern USA
Cited by: 7
Author(s): Yongjian Chen, Adalee Martinez, Sydney Cleavenger, Julia Rudolph, Albert Barberán
Software Mentions: 5
Published: over 3 years ago

10.3390/d12060245

Nourished, Exposed Beaches Exhibit Altered Sediment Structure and Meiofaunal Communities
Cited by: 8
Author(s): Stephen R. Fegley, Julian P. Smith, Douglas E. Johnson, Amelia U. Schirmer, Jeremiah Daniel JonesBoggs, Austin Edmonds, Joseph Bursey
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-017-14271-6

Comparing crop rotations between organic and conventional farming
Cited by: 78
Author(s): Pietro Barbieri, Sylvain Pellerin, Thomas Nesme
Software Mentions: 5
Published: about 7 years ago

10.3390/jcm9010161

The Serum Cell-Free microRNA Expression Profile in MCTD, SLE, SSc, and RA Patients
Cited by: 16
Author(s): Barbara Stypińska, Anna Wajda, Ewa Walczuk, Marzena Olesińska, Aleksandra Lewandowska, Marcela Walczyk, Agnieszka Paradowska‐Gorycka
Software Mentions: 5
Published: almost 5 years ago

10.1002/lno.10967

Fewer blue lakes and more murky lakes across the continental U.S.: Implications for planktonic food webs
Cited by: 64
Author(s): Dina M. Leech, Amina I. Pollard, Stephanie Labou, Stephanie E. Hampton
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.34226

Gene family innovation, conservation and loss on the animal stem lineage
Cited by: 144
Author(s): Daniel J. Richter, Parinaz Fozouni, Michael B. Eisen, Nicole King
Software Mentions: 5
Published: over 6 years ago

10.1186/s13059-017-1318-8

Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage
Cited by: 94
Author(s): Péter István Kulcsár, András Tálas, Krisztina Huszár, Zoltán Ligeti, Eszter Tóth, Nóra Weinhardt, Elfrieda Fodor, Ervin Welker
Software Mentions: 5
Published: about 7 years ago

10.1186/s13059-019-1857-2

eIF4A2 drives repression of translation at initiation by Ccr4-Not through purine-rich motifs in the 5′UTR
Cited by: 34
Author(s): Ania Wilczynska, Sarah L. Gillen, Tobias Schmidt, Hedda A. Meijer, Rebekah Jukes-Jones, Claudia Langlais, Kari Kopra, Wei-Ting Lu, Jack D. Godfrey, Ben R Hawley, Kelly Hodge, Sara Zanivan, Kelvin Cain, John Le Quesne, Martin Bushell
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0176596

Evolution of microRNA in primates
Cited by: 31
Author(s): Jennifer C. McCreight, Sean E. Schneider, Damien B. Wilburn, Willie J. Swanson
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0206581

Age, growth and maturity of the Australian sharpnose shark Rhizoprionodon taylori from the Gulf of Papua
Cited by: 13
Author(s): Leontine Baje, J. J. C. Smart, Andrew Chin, William T. White, Colin A. Simpfendorfer
Software Mentions: 5
Published: about 6 years ago

10.3390/ani10071207

Automated Bird Counting with Deep Learning for Regional Bird Distribution Mapping
Cited by: 28
Author(s): Hüseyin Akçay, Bekir Kabasakal, Duygugül Aksu, Nusret Demir, Melih Öz, Ali Erdoğan
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2020.607396

Distinct Microbial Communities in Adjacent Rock and Soil Substrates on a High Arctic Polar Desert
Cited by: 16
Author(s): Yong‐Hoe Choe, Min‐Cheol Kim, Yoo Kyung Lee
Software Mentions: 4
Published: almost 4 years ago

10.7717/peerj.11948

Quantifying bite force in coexisting tayassuids and feral suids: a comparison between morphometric functional proxies and in vivo measurements
Cited by: 1
Author(s): Fernando Lencastre Sicuro, Luiz Flamarion B. Oliveira, Carla Deonísia Hendges, Carlos Fonseca
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-82526-4

Rats show direct reciprocity when interacting with multiple partners
Cited by: 11
Author(s): Nina Kettler, Manon K. Schweinfurth, Michael Taborsky
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12891-020-03705-4

Range of abduction in patients with Legg-Calvé-Perthes disease – a nationwide register-based cohort study
Cited by: 2
Author(s): Ahmad El-Harbiti, Yasmin D. Hailer
Software Mentions: 4
Published: about 4 years ago

10.7717/peerj.3043

Effectiveness of removals of the invasive lionfish: how many dives are needed to deplete a reef?
Cited by: 26
Author(s): Paolo Usseglio, Jason D. Selwyn, Alan M. Downey‐Wall, J. Derek Hogan
Software Mentions: 4
Published: over 7 years ago

10.3390/s17081891

Influence of the Distribution of Tag IDs on RFID Memoryless Anti-Collision Protocols
Cited by: 6
Author(s): Nikola Cmiljanic, Hugo Landaluce, Asier Perallos, Laura Arjona
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2105-8-421

A procedure for the estimation over time of metabolic fluxes in scenarios where measurements are uncertain and/or insufficient
Cited by: 54
Author(s): Francisco Llaneras, Jesús Picó
Software Mentions: 4
Published: about 17 years ago

10.1186/s12879-020-05600-8

Describing nearly two decades of Chagas disease in Germany and the lessons learned: a retrospective study on screening, detection, diagnosis, and treatment of Trypanosoma cruzi infection from 2000 – 2018
Cited by: 10
Author(s): Jessica Michelle Guggenbühl Noller, Günter Fröschl, Philip Eisermann, Johannes Jochum, Stefanie Theuring, Ingrid Reiter‐Owona, Alfred Lennart Bissinger, Michael Höelscher, Abhishek Bakuli, Franz-Josef Falkner von Sonnenburg, Camilla Rothe, Gisela Bretzel, Pedro Albajar-Viñas, Lise Grout, Michael Pritsch
Software Mentions: 4
Published: almost 4 years ago

10.7717/peerj.4970

Archaeal and bacterial diversity and community composition from 18 phylogenetically divergent sponge species in Vietnam
Cited by: 22
Author(s): Ton That Huu Dat, Georg Steinert, Nguyễn Thị Kim Cúc, Hauke Smidt, Detmer Sipkema
Software Mentions: 4
Published: over 6 years ago

10.1186/s12879-021-06324-z

Estimating regional prevalence of chronic hepatitis C with a capture-recapture analysis
Cited by: 0
Author(s): Patricia A. M. Kracht, Joop E. Arends, Andy I. M. Hoepelman, Mirjam Kretzschmar
Software Mentions: 4
Published: over 3 years ago

10.1186/s13071-020-04267-z

Contrasted transmission efficiency of Zika virus strains by mosquito species Aedes aegypti, Aedes albopictus and Culex quinquefasciatus from Reunion Island
Cited by: 11
Author(s): Yann Gomard, Cyrille Lebon, Patrick Mavingui, Célestine M. Atyame
Software Mentions: 4
Published: over 4 years ago

10.1098/rsos.191705

Pathogen avoidance and prey discrimination in ants
Cited by: 14
Author(s): Hugo Pereira, Claire Detrain
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12863-016-0365-6

Fragman: an R package for fragment analysis
Cited by: 45
Author(s): Giovanny Covarrubias‐Pazaran, Luis Díaz-Garcia, Brandon Schlautman, Walter Salazar, Juan Zalapa
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0187134

A millennium of north-east Atlantic cod juvenile growth trajectories inferred from archaeological otoliths
Cited by: 15
Author(s): Guðbjörg Ásta Ólafsdóttir, Gróa Pétursdóttir, Hlynur Bárðarson, Ragnar Edvardsson
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0024542

Comparative Analysis of Serine/Arginine-Rich Proteins across 27 Eukaryotes: Insights into Sub-Family Classification and Extent of Alternative Splicing
Cited by: 62
Author(s): Dale N. Richardson, Mark F. Rogers, Adam Labadorf, Asa Ben-Hur, Hui Guo, Andrew H. Paterson, Anireddy S. N. Reddy
Software Mentions: 4
Published: about 13 years ago

10.1172/JCI149523

Discriminatory plasma biomarkers predict specific clinical phenotypes of necrotizing soft-tissue infections
Cited by: 6
Author(s): Laura M Palma Medina, Eivind Rath, Sanjeevan Jahagirdar, Trond Bruun, Martin Bruun Madsen, Kristoffer Strålin, Christian Unge, Marco Bo Hansen, Per Arnell, Michael Nekludov, Ole Hyldegaard, Magda Lourda, Vítor A. P. Martins dos Santos, Edoardo Saccenti, Steinar Skrede, Mattias Svensson, Anna Norrby‐Teglund
Software Mentions: 4
Published: over 3 years ago