Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0248185

https://doi.org/10.1371/journal.pone.0248185

Gut microbiota profiles in diarrheic patients with co-occurrence of Clostridioides difficile and Blastocystis

Cited by: 15
Author(s): Laura Vega, Giovanny Herrera, Marina Muñoz, Manuel A. Patarroyo, Jenny G. Maloney, Mónica Santı́n, Juan David Ramírez
Published: over 3 years ago

Software Mentions 14

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
bioconductor: RCy3
Functions to Access and Control Cytoscape
Papers that mentioned: 22
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: FSA
Simple Fisheries Stock Assessment Methods
Papers that mentioned: 225
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggraph
An Implementation of Grammar of Graphics for Graphs and Networks
Papers that mentioned: 58
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: psych
Procedures for Psychological, Psychometric, and Personality Research
Papers that mentioned: 1,085
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: corr
Interfaces to CASPER correlators
Papers that mentioned: 11
pypi: FSA
Finite State Automaton library
Papers that mentioned: 225
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555