Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSphere.00481-19

https://doi.org/10.1128/mSphere.00481-19

Biogeographic Patterns in Members of Globally Distributed and Dominant Taxa Found in Port Microbial Communities

Cited by: 15
Author(s): Ryan B. Ghannam, Laura G. Schaerer, Timothy Butler, Stephen M. Techtmann
Published: over 4 years ago

Software Mentions 11

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: microbiome
Microbiome Analytics
Papers that mentioned: 114
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: caret
Classification and Regression Training
Papers that mentioned: 630
cran: caretEnsemble
Ensembles of Caret Models
Papers that mentioned: 8
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: caret
A Python Interface to Asterisk
Papers that mentioned: 630
pypi: microbiome
Papers that mentioned: 114