Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1098/rsos.191609

https://doi.org/10.1098/rsos.191609

Cited by: 17
Author(s): Kirsten Grond, Hannah Guilani, Sarah M. Hird
Published: over 4 years ago

Software Mentions 15

bioconductor: DECIPHER
Tools for curating, analyzing, and manipulating biological sequences
Papers that mentioned: 415
bioconductor: decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Papers that mentioned: 76
bioconductor: FEAST
FEAture SelcTion (FEAST) for Single-cell clustering
Papers that mentioned: 87
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: caret
Classification and Regression Training
Papers that mentioned: 630
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: phangorn
Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
cran: RDP
The Ramer-Douglas-Peucker Algorithm
Papers that mentioned: 1,243
cran: rfUtilities
Random Forests Model Selection and Performance Evaluation
Papers that mentioned: 21
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: caret
A Python Interface to Asterisk
Papers that mentioned: 630
pypi: decontam
Decontaminate paired-end DNA sequencing data
Papers that mentioned: 76
pypi: plyr
UNKNOWN
Papers that mentioned: 468