Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02020-4

https://doi.org/10.1186/s13059-020-02020-4

Cited by: 43
Author(s): Meagan A Rubel, Arwa Abbas, Louis J. Taylor, Andrew Jesse Connell, Ceylan Tanes, Kyle Bittinger, Valantine Ngum Ndze, Julius Y. Fonsah, Eric Ngwang, André Essiane, Charles Fokunang, Alfred K. Njamnshi, Frederic D. Bushman, Sarah A. Tishkoff
Published: almost 4 years ago

Software Mentions 16

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: cooccur
Probabilistic Species Co-Occurrence Analysis in R
Papers that mentioned: 14
cran: corrplot
Visualization of a Correlation Matrix
Papers that mentioned: 1,077
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: magrittr
A Forward-Pipe Operator for R
Papers that mentioned: 107
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: taxonomizr
Functions to Work with NCBI Accessions and Taxonomy
Papers that mentioned: 4
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: demux
Application for demultiplexing sequence data
Papers that mentioned: 37