Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: cooccur
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/cooccur
Probabilistic Species Co-Occurrence Analysis in R
4 versions
Latest release: over 8 years ago
1 dependent package
425 downloads last month
Papers Mentioning cooccur 14
10.1186/s13059-020-02020-4
Lifestyle and the presence of helminths is associated with gut microbiome composition in CamerooniansCited by: 43
Author(s): Meagan A Rubel, Arwa Abbas, Louis J. Taylor, Andrew Jesse Connell, Ceylan Tanes, Kyle Bittinger, Valantine Ngum Ndze, Julius Y. Fonsah, Eric Ngwang, André Essiane, Charles Fokunang, Alfred K. Njamnshi, Frederic D. Bushman, Sarah A. Tishkoff
Software Mentions: 16
Published: over 4 years ago
10.1002/ece3.5599
Linking pollen foraging of megachilid bees to their nest bacterial microbiotaCited by: 29
Author(s): Anna Voulgari‐Kokota, Markus J. Ankenbrand, Gudrun Grimmer, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 10
Published: about 5 years ago
10.3390/microorganisms9061273
Inoculation with Mycorrhizal Fungi and Irrigation Management Shape the Bacterial and Fungal Communities and Networks in Vineyard SoilsCited by: 8
Author(s): Nazareth Torres, Runze Yu, S. Kaan Kurtural
Software Mentions: 8
Published: over 3 years ago
10.1002/ece3.2851
Community assembly in <i>Nothobranchius</i> annual fishes: Nested patterns, environmental niche and biogeographic historyCited by: 20
Author(s): Martin Reichard, Michal Janáč, Matěj Polačik, Radim Blažek, Milan Vrtílek
Software Mentions: 7
Published: over 7 years ago
10.1371/journal.pone.0215274
Multi-driver and multi-scale assessment of vine community structure and composition across a complex tropical environmental matrixCited by: 1
Author(s): Diana L. Delgado, Carla Restrepo
Software Mentions: 4
Published: over 5 years ago
10.1002/ece3.7067
Compartmentalized organization of ecological niche occupation in insular invertebrate communitiesCited by: 5
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 4
Published: almost 4 years ago
10.3390/v10070388
Co-Infection Patterns in Individual Ixodes scapularis Ticks Reveal Associations between Viral, Eukaryotic and Bacterial MicroorganismsCited by: 40
Author(s): Shaun T. Cross, Marylee Kapuscinski, Jacquelyn Perino, Bernadette L Maertens, James Weger-Lucarelli, Gregory D. Ebel, Mark D. Stenglein
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pone.0208720
Modular structure in fish co-occurrence networks: A comparison across spatial scales and grouping methodologiesCited by: 9
Author(s): Daniel J. McGarvey, Joseph A. Veech
Software Mentions: 4
Published: almost 6 years ago
10.1128/mSystems.00939-20
Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human GutCited by: 15
Author(s): Jacobo de la Cuesta-Zuluaga, Tim D. Spector, Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 4
Published: over 3 years ago
10.3390/jof7030175
Pineapple Mycobiome Related to Fruitlet Core Rot Occurrence and the Influence of Fungal Species Dispersion PatternsCited by: 6
Author(s): Manon Vignassa, Jean-Christophe Meile, Frédéric Chiroleu, Christian Soria, Charlène Leneveu‐Jenvrin, Sabine Schorr‐Galindo, Marc Chillet
Software Mentions: 4
Published: over 3 years ago
10.1128/mSphere.00017-18
Air-Dried Brown Seaweed, <i>Ascophyllum nodosum</i> , Alters the Rumen Microbiome in a Manner That Changes Rumen Fermentation Profiles and Lowers the Prevalence of Foodborne PathogensCited by: 30
Author(s): Mi Zhou, Martin Hünerberg, Yanhong Chen, Tim Reuter, Tim A. McAllister, F. D. Evans, Alan T. Critchley, Le Luo Guan
Software Mentions: 3
Published: over 6 years ago
10.1186/s40249-016-0157-2
Impact of co-infections with enteric pathogens on children suffering from acute diarrhea in southwest ChinaCited by: 82
Author(s): Shunxian Zhang, Yongming Zhou, Wen Xu, Liqiao Tian, Jiaxu Chen, Shaohong Chen, Zhisheng Dang, Wenpeng Gu, Jianwen Yin, Emmanuel Serrano, Xiao‐Nong Zhou
Software Mentions: 3
Published: over 8 years ago
10.1038/ismej.2017.166
Aquatic urban ecology at the scale of a capital: community structure and interactions in street guttersCited by: 11
Author(s): Vincent Hervé, Boris Leroy, Albert Da Silva Pires, Pascal J. Lopez
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-020-66752-w
Effects of prescribed fire and social insects on saproxylic beetles in a subtropical forestCited by: 8
Author(s): Michael D. Ulyshen, Andrea Lucky, Timothy T. Work
Software Mentions: 1
Published: over 4 years ago