Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: cooccur

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/cooccur

Probabilistic Species Co-Occurrence Analysis in R
4 versions
Latest release: over 8 years ago
1 dependent package
425 downloads last month

Papers Mentioning cooccur 14

Lifestyle and the presence of helminths is associated with gut microbiome composition in Cameroonians
Cited by: 43
Author(s): Meagan A Rubel, Arwa Abbas, Louis J. Taylor, Andrew Jesse Connell, Ceylan Tanes, Kyle Bittinger, Valantine Ngum Ndze, Julius Y. Fonsah, Eric Ngwang, André Essiane, Charles Fokunang, Alfred K. Njamnshi, Frederic D. Bushman, Sarah A. Tishkoff
Software Mentions: 16
Published: over 4 years ago

10.1002/ece3.5599

Linking pollen foraging of megachilid bees to their nest bacterial microbiota
Cited by: 29
Author(s): Anna Voulgari‐Kokota, Markus J. Ankenbrand, Gudrun Grimmer, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 10
Published: about 5 years ago

10.3390/microorganisms9061273

Inoculation with Mycorrhizal Fungi and Irrigation Management Shape the Bacterial and Fungal Communities and Networks in Vineyard Soils
Cited by: 8
Author(s): Nazareth Torres, Runze Yu, S. Kaan Kurtural
Software Mentions: 8
Published: over 3 years ago

10.1002/ece3.2851

Community assembly in <i>Nothobranchius</i> annual fishes: Nested patterns, environmental niche and biogeographic history
Cited by: 20
Author(s): Martin Reichard, Michal Janáč, Matěj Polačik, Radim Blažek, Milan Vrtílek
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0215274

Multi-driver and multi-scale assessment of vine community structure and composition across a complex tropical environmental matrix
Cited by: 1
Author(s): Diana L. Delgado, Carla Restrepo
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.7067

Compartmentalized organization of ecological niche occupation in insular invertebrate communities
Cited by: 5
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 4
Published: almost 4 years ago

10.3390/v10070388

Co-Infection Patterns in Individual Ixodes scapularis Ticks Reveal Associations between Viral, Eukaryotic and Bacterial Microorganisms
Cited by: 40
Author(s): Shaun T. Cross, Marylee Kapuscinski, Jacquelyn Perino, Bernadette L Maertens, James Weger-Lucarelli, Gregory D. Ebel, Mark D. Stenglein
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0208720

Modular structure in fish co-occurrence networks: A comparison across spatial scales and grouping methodologies
Cited by: 9
Author(s): Daniel J. McGarvey, Joseph A. Veech
Software Mentions: 4
Published: almost 6 years ago

10.1128/mSystems.00939-20

Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut
Cited by: 15
Author(s): Jacobo de la Cuesta-Zuluaga, Tim D. Spector, Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 4
Published: over 3 years ago

10.3390/jof7030175

Pineapple Mycobiome Related to Fruitlet Core Rot Occurrence and the Influence of Fungal Species Dispersion Patterns
Cited by: 6
Author(s): Manon Vignassa, Jean-Christophe Meile, Frédéric Chiroleu, Christian Soria, Charlène Leneveu‐Jenvrin, Sabine Schorr‐Galindo, Marc Chillet
Software Mentions: 4
Published: over 3 years ago

10.1128/mSphere.00017-18

Air-Dried Brown Seaweed, <i>Ascophyllum nodosum</i> , Alters the Rumen Microbiome in a Manner That Changes Rumen Fermentation Profiles and Lowers the Prevalence of Foodborne Pathogens
Cited by: 30
Author(s): Mi Zhou, Martin Hünerberg, Yanhong Chen, Tim Reuter, Tim A. McAllister, F. D. Evans, Alan T. Critchley, Le Luo Guan
Software Mentions: 3
Published: over 6 years ago

10.1186/s40249-016-0157-2

Impact of co-infections with enteric pathogens on children suffering from acute diarrhea in southwest China
Cited by: 82
Author(s): Shunxian Zhang, Yongming Zhou, Wen Xu, Liqiao Tian, Jiaxu Chen, Shaohong Chen, Zhisheng Dang, Wenpeng Gu, Jianwen Yin, Emmanuel Serrano, Xiao‐Nong Zhou
Software Mentions: 3
Published: about 8 years ago

10.1038/ismej.2017.166

Aquatic urban ecology at the scale of a capital: community structure and interactions in street gutters
Cited by: 11
Author(s): Vincent Hervé, Boris Leroy, Albert Da Silva Pires, Pascal J. Lopez
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-66752-w

Effects of prescribed fire and social insects on saproxylic beetles in a subtropical forest
Cited by: 8
Author(s): Michael D. Ulyshen, Andrea Lucky, Timothy T. Work
Software Mentions: 1
Published: over 4 years ago