Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00939-20

https://doi.org/10.1128/mSystems.00939-20

Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut

Cited by: 15
Author(s): Jacobo de la Cuesta-Zuluaga, Tim D. Spector, Nicholas D. Youngblut, Ruth E. Ley
Published: over 3 years ago

Software Mentions 4

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: cooccur
Probabilistic Species Co-Occurrence Analysis in R
Papers that mentioned: 14
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Papers that mentioned: 144