Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: TESS

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/TESS

Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events
8 versions
Latest release: over 2 years ago
3 dependent packages
450 downloads last month

Papers Mentioning TESS 359

10.1186/s12862-020-01717-1
Climatic and topographic changes since the Miocene influenced the diversification and biogeography of the tent tortoise (Psammobates tentorius) species complex in Southern Africa
Cited by: 7
Author(s): Zhongning Zhao, Neil Heideman, Phillip Armand Bester, Adriaan Jordaan, Margaretha D. Hofmeyr
Software Mentions: 18
Published: about 4 years ago
10.1038/s41598-020-66628-z
Impact of a natural disaster on access to care and biopsychosocial outcomes among Hispanic/Latino cancer survivors
Cited by: 15
Author(s): Mary Rodríguez-Rabassa, Ruthmarie Hernandez, Zindie Rodríguez, Claudia B. Colon-Echevarria, Lizette Maldonado, Nelmit Tollinchi, Estefanía Torres-Marrero, Adnil Mulero, Daniela Albors, Jaileene Pérez‐Morales, Idhaliz Flores, Julie Dutil, Heather Jim, Eida Castro, Guillermo N. Armaiz-Peña
Software Mentions: 14
Published: over 4 years ago
10.1371/journal.pone.0229330
StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis
Cited by: 22
Author(s): Nicola G. Criscuolo, Claudia Angelini
Software Mentions: 12
Published: almost 5 years ago
10.1534/g3.117.300131
CONE: Community Oriented Network Estimation Is a Versatile Framework for Inferring Population Structure in Large-Scale Sequencing Data
Cited by: 12
Author(s): Markku Kuismin, Jon Ahlinder, Mikko Sillanpää
Software Mentions: 10
Published: about 7 years ago
10.1186/s12862-014-0204-1
Strong genetic structure corresponds to small-scale geographic breaks in the Australian alpine grasshopper Kosciuscola tristis
Cited by: 16
Author(s): R. O. Slatyer, M. Nash, Adam D. Miller, Yoshinori Endo, Kate D. L. Umbers, Ary A. Hoffmann
Software Mentions: 6
Published: about 10 years ago
10.1111/eva.12589
Seascape genetics and biophysical connectivity modelling support conservation of the seagrass<i>Zostera marina</i>in the Skagerrak-Kattegat region of the eastern North Sea
Cited by: 38
Author(s): Marlene Jahnke, Per R. Jonsson, Per‐Olav Moksnes, Lars-Ove Loo, Martin Nilsson Jacobi, Jeanine L. Olsen
Software Mentions: 6
Published: almost 7 years ago
10.1002/ece3.5420
Population genetic structure and connectivity of the seagrass <i>Thalassia hemprichii</i> in the Western Indian Ocean is influenced by predominant ocean currents
Cited by: 24
Author(s): Marlene Jahnke, Martin Gullström, Josefine Larsson, Maria E. Asplund, Said S. Mgeleka, Mathew Ogalo Silas, Arielle I. Hoamby, Jamal Mahafina, Lina Mtwana Nordlund
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0073051
marmap: A Package for Importing, Plotting and Analyzing Bathymetric and Topographic Data in R
Cited by: 387
Author(s): Eric Pante, Benoît Simon-Bouhet
Software Mentions: 5
Published: about 11 years ago
10.1002/ece3.4291
Regional and local patterns of genetic variation and structure in yellow‐necked mice ‐ the roles of geographic distance, population abundance, and winter severity
Cited by: 10
Author(s): Sylwia D. Czarnomska, Magdalena Niedziałkowska, Tomasz Borowik, Bogumiła Jędrzejewska
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-018-22580-7
Brettanomyces bruxellensis population survey reveals a diploid-triploid complex structured according to substrate of isolation and geographical distribution
Cited by: 70
Author(s): Marta Avramova, Alice Cibrario, Emilien Peltier, Monika Coton, Emmanuel Coton, Joseph Schacherer, Giuseppe Spano, Vittorio Capozzi, Giuseppe Blaiotta, Franck Salin, Marguerite Dols‐Lafargue, Paul R. Grbin, Chris Curtin, Warren Albertin, Isabelle Masneuf‐Pomarède
Software Mentions: 4
Published: over 6 years ago
10.1002/ece3.5239
Multiple introductions and population structure during the rapid expansion of the invasive Sahara mustard (<i>Brassica tournefortii</i>)
Cited by: 12
Author(s): Daniel E. Winkler, Kenneth James Chapin, F. Ochsenbein, J. David Garmon, Brandon S. Gaut, Travis E. Huxman
Software Mentions: 4
Published: over 5 years ago
10.3389/fpls.2021.618245
Analysis of Genetic Diversity and Population Structure of Orobanche foetida Populations From Tunisia Using RADseq
Cited by: 6
Author(s): Amal Boukteb, Shota Sakaguchi, Yasunori Ichihashi, Mohamed Kharrat, Atsushi J. Nagano, Ken Shirasu, Mariem Bouhadida
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pcbi.1003829
eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models
Cited by: 26
Author(s): Michał Bryliński
Software Mentions: 4
Published: about 10 years ago
10.1371/journal.pone.0153570
If Dung Beetles (Scarabaeidae: Scarabaeinae) Arose in Association with Dinosaurs, Did They Also Suffer a Mass Co-Extinction at the K-Pg Boundary?
Cited by: 66
Author(s): Nicole L. Gunter, Tom A. Weir, Adam Slipinksi, Ladislav Bocäk, Stephen L. Cameron
Software Mentions: 4
Published: over 8 years ago
10.1002/ece3.7403
Genomic divergence in sympatry indicates strong reproductive barriers and cryptic species within <i>Eucalyptus salubris</i>
Cited by: 9
Author(s): Rachel M. Binks, Dorothy A. Steane, Margaret Byrne
Software Mentions: 4
Published: over 3 years ago
10.1186/1472-6785-14-22
Causes and consequences of fine-scale population structure in a critically endangered freshwater seal
Cited by: 28
Author(s): Mia Valtonen, Jukka U. Palo, Jouni Aspi, Minna Ruokonen, Mervi Kunnasranta, Tommi Nyman
Software Mentions: 4
Published: almost 11 years ago
10.1371/journal.pone.0145165
Assessing Genetic Structure in Common but Ecologically Distinct Carnivores: The Stone Marten and Red Fox
Cited by: 12
Author(s): Mafalda Basto, Margarida Santos‐Reis, Luciana G. Simões, Clara Grilo, Luı́s Cardoso, Hélder Cortes, Michael William Bruford, Carlos Fernandes
Software Mentions: 4
Published: almost 9 years ago
10.1002/ece3.1305
Challenges in analysis and interpretation of microsatellite data for population genetic studies
Cited by: 269
Author(s): Alexander I. Putman, Ignazio Carbone
Software Mentions: 4
Published: about 10 years ago
10.1186/1471-2105-6-79
Cited by: 189
Author(s): Voichita D. Marinescu, Isaac S. Kohane, Alberto Riva
Software Mentions: 4
Published: almost 20 years ago
10.1111/eva.12301
Contrasting genetic structure between mitochondrial and nuclear markers in the dengue fever mosquito from Rio de Janeiro: implications for vector control
Cited by: 37
Author(s): Gordana Rašić, Renata Schama, Rosanna Powell, Rafael Maciel-de-Freitas, Nancy M. Endersby‐Harshman, Igor Filipović, Gabriel Sylvestre, Renato Maspero, Ary A. Hoffmann
Software Mentions: 3
Published: about 9 years ago
10.3390/s21041249
Deep Learning Techniques for Speech Emotion Recognition, from Databases to Models
Cited by: 110
Author(s): Babak Joze Abbaschian, Daniel Sierra-Sosa, Adel Elmaghraby
Software Mentions: 3
Published: almost 4 years ago
10.1098/rsos.170115
A single migrant enhances the genetic diversity of an inbred puma population
Cited by: 34
Author(s): Kyle D. Gustafson, T. Winston Vickers, Walter M. Boyce, Holly B. Ernest
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-017-06365-y
Genetic variation and population structure of Botswana populations as identified with AmpFLSTR Identifiler short tandem repeat (STR) loci
Cited by: 12
Author(s): Tiroyamodimo Tau, Anthony Wally, Thokozile Patricia Fanie, Goitseone Lorato Ngono, Sununguko Wata Mpoloka, Sean Davison, María Eugenia D’Amato
Software Mentions: 3
Published: over 7 years ago
10.1186/gb-2004-5-11-r94
Cited by: 131
Author(s): Stephen Swift, Allan Tucker, Veronica Vinciotti, Nigel Martin, Christine A. Orengo, Xiaohui Liu, Paul Kellam
Software Mentions: 3
Published: almost 21 years ago
10.1111/eva.12642
Measures of effective population size in sea otters reveal special considerations for wide-ranging species
Cited by: 18
Author(s): Roderick B. Gagne, M. Timothy Tinker, Kyle D. Gustafson, Katherine Ralls, Shawn Larson, L. Max Tarjan, Melissa A. Miller, Holly B. Ernest
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0056786
Lineage Divergence and Historical Gene Flow in the Chinese Horseshoe Bat (Rhinolophus sinicus)
Cited by: 21
Author(s): Xiuguang Mao, Guimei He, Junpeng Zhang, Stephen J. Rossiter, Shuyi Zhang
Software Mentions: 3
Published: over 11 years ago
10.1371/journal.pone.0192386
Geographical and environmental determinants of the genetic structure of wild barley in southeastern Anatolia
Cited by: 6
Author(s): Reza Pournosrat, Selma Kaya, Salar Shaaf, Benjamin Kilian, Hakan Özkan
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12862-020-01628-1
Mid-Cenozoic climate change, extinction, and faunal turnover in Madagascar, and their bearing on the evolution of lemurs
Cited by: 14
Author(s): Laurie R. Godfrey, Karen E. Samonds, Justin W. Baldwin, Michael R. Sutherland, Jason M. Kamilar, Kristen L. Allfisher
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0159024
Functional Characterization of the Osteoarthritis Susceptibility Mapping to CHST11—A Bioinformatics and Molecular Study
Cited by: 10
Author(s): Louise N. Reynard, Madhushika Ratnayake, Mauro Santibanez‐Koref, John Loughlin
Software Mentions: 3
Published: over 8 years ago
10.1007/s10686-018-9611-4
Exoplanet spectroscopy and photometry with the Twinkle space telescope
Cited by: 41
Author(s): Billy Edwards, Malena Rice, Tiziano Zingalès, Marcell Tessenyi, I. P. Waldmann, Giovanna Tinetti, Enzo Pascale, G. Savini, Subhajit Sarkar
Software Mentions: 3
Published: almost 6 years ago
10.1186/1476-4598-11-15
c-Myb regulates matrix metalloproteinases 1/9, and cathepsin D: implications for matrix-dependent breast cancer cell invasion and metastasis
Cited by: 52
Author(s): Lucia Knopfová, Petr Beneš, Lucie Pekarčíková, Markéta Hermanová, Michal Masařík, Zuzana Pernicová, Karel Souček, Jan Šmarda
Software Mentions: 3
Published: over 12 years ago
10.3389/fpls.2019.01580
Disentangling the Environmental Factors That Shape Genetic and Phenotypic Leaf Trait Variation in the Tree Qualea grandiflora Across the Brazilian Savanna
Cited by: 13
Author(s): Renata Santiago de Oliveira Buzatti, Thais Ribeiro Pfeilsticker, André Carneiro Muniz, Vincenzo A. Ellis, Renan P. Souza, José Pires de Lemos-Filho, Maria Bernadete Lovato
Software Mentions: 3
Published: almost 5 years ago
10.1002/ece3.5269
Spatial differences in genetic diversity and northward migration suggest genetic erosion along the boreal caribou southern range limit and continued range retraction
Cited by: 14
Author(s): Laura M. Thompson, Cornelya F. C. Klütsch, Micheline Manseau, Paul J. Wilson
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj.5974
Genetic and phenotypic differentiation of lumpfish (<i>Cyclopterus lumpus</i>) across the North Atlantic: implications for conservation and aquaculture
Cited by: 23
Author(s): Benjamin Alexander Whittaker, Sofía Consuegra, Carlos García de Leániz
Software Mentions: 3
Published: about 6 years ago
10.1002/ece3.4343
Quantifying dispersal between marine protected areas by a highly mobile species, the bottlenose dolphin,<i>Tursiops truncatus</i>
Cited by: 15
Author(s): Milaja Nykänen, Eileen Dillane, Anneli Englund, Andrew Foote, Simon Ingram, Marie Louis, Luca Mirimin, Machiel G. Oudejans, Emer Rogan
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pgen.1002585
Intronic Cis-Regulatory Modules Mediate Tissue-Specific and Microbial Control of angptl4/fiaf Transcription
Cited by: 45
Author(s): J. Gray Camp, Amelia L. Jazwa, Chad M. Trent, John F. Rawls
Software Mentions: 3
Published: over 12 years ago
10.1371/journal.pgen.1000075
Demographic History of European Populations of Arabidopsis thaliana
Cited by: 197
Author(s): F. Ochsenbein, Michaël G. B. Blum, Mattias Jakobsson, Noah A. Rosenberg
Software Mentions: 3
Published: over 16 years ago
10.1186/1472-6807-8-45
Protein Functional Surfaces: Global Shape Matching and Local Spatial Alignments of Ligand Binding Sites
Cited by: 66
Author(s): T.A. Binkowski, Andrzej Joachimiak
Software Mentions: 3
Published: almost 17 years ago
10.7717/peerj.4487
Effects of landscape features on population genetic variation of a tropical stream fish, Stone lapping minnow,<i>Garra cambodgiensis</i>, in the upper Nan River drainage basin, northern Thailand
Cited by: 5
Author(s): Chaowalee Jaisuk, Wansuk Senanan
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-021-88263-y
A network meta-analysis on the effectiveness and safety of acupuncture in treating patients with major depressive disorder
Cited by: 9
Author(s): Zhichao Hu, Lam Wai Ching, Huijuan Li, Liang Yao, Zhiyu Wang, Wei‐Yang Huang, Zhaoxiang Bian, Linda L. D. Zhong
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-018-29516-1
KampoDB, database of predicted targets and functional annotations of natural medicines
Cited by: 8
Author(s): Ryusuke Sawada, Makoto Iwata, Masahito Umezaki, Yoshihiko Usui, Toshikazu Kobayashi, Takaki Kubono, Satoru Hayashi, Makoto Kadowaki, Yoshihiro Yamanishi
Software Mentions: 2
Published: over 6 years ago
10.3390/s20195559
Fusing Visual Attention CNN and Bag of Visual Words for Cross-Corpus Speech Emotion Recognition
Cited by: 22
Author(s): Minjie Seo, Myung Ho Kim
Software Mentions: 2
Published: about 4 years ago
10.1038/srep32154
TGEV infection up-regulates FcRn expression via activation of NF-κB signaling
Cited by: 23
Author(s): Jianming Guo, Fēi Li, Shaoju Qian, Dingren Bi, Qigai He, Hui Jin, Rui Luo, Shaowen Li, Xianrong Meng, Zili Li
Software Mentions: 2
Published: about 8 years ago
10.1590/1678-4685-GMB-2016-0046
High genetic diversity among and within bitter manioc varieties cultivated in different soil types in Central Amazonia
Cited by: 6
Author(s): Alessandro Alves‐Pereira, Nivaldo Peroni, Marcelo Mattos Cavallari, Maristerra R. Lemes, Maria Imaculada Zucchi, Charles R. Clement
Software Mentions: 2
Published: over 7 years ago
10.1186/1471-2105-10-382
Iterative pruning PCA improves resolution of highly structured populations
Cited by: 30
Author(s): Apichart Intarapanich, Philip Shaw, Anunchai Assawamakin, Pongsakorn Wangkumhang, Chumpol Ngamphiw, Kridsadakorn Chaichoompu, Jittima Piriyapongsa, Sissades Tongsima
Software Mentions: 2
Published: almost 15 years ago
10.1186/1471-2105-8-407
Bioinformatic identification of novel putative photoreceptor specific cis-elements
Cited by: 4
Author(s): Charles G. Danko, Vera A. McIlvain, Maochun Qin, Barry E. Knox, Arkady M. Pertsov
Software Mentions: 2
Published: about 17 years ago
10.1186/1471-2407-10-329
Identification of target genes for wild type and truncated HMGA2 in mesenchymal stem-like cells
Cited by: 25
Author(s): Jörn Henriksen, Marianne Stabell, Leonardo A. Meza‐Zepeda, Silje Au Lauvrak, Moustapha Kassem, Ola Myklebost
Software Mentions: 2
Published: over 14 years ago
10.1002/dvg.22963
Transcriptional regulation of the proto‐oncogene<i>Zfp521</i>by SPI1 (PU.1) and HOXC13
Cited by: 11
Author(s): Ming Yu, Salma Aldallal, Latifa Al‐Haj, Shiraj Panjwani, Akina S. McCartney, Sarah Edwards, Pooja Manjunath, Catherine Walker, Alexander Awgulewitsch, Kathryn E. Hentges
Software Mentions: 2
Published: about 8 years ago
10.1186/s12864-019-5477-8
TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data
Cited by: 7
Author(s): Shaokun An, Liang Ma, Lin Wan
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2164-8-1
Comparative genomic analysis of prion genes
Cited by: 152
Author(s): Marko Premzl, Vera Gamulin
Software Mentions: 2
Published: almost 18 years ago
10.1186/1471-2164-13-433
Regulatory elements of Caenorhabditis elegans ribosomal protein genes
Cited by: 12
Author(s): Monica C. Sleumer, Guifeng Wei, Yunfei Wang, Hao Chang, Tao Xu, Runsheng Chen, Michael Q. Zhang
Software Mentions: 2
Published: about 12 years ago
10.1186/1471-2164-11-145
Genome-wide transcription factor binding site/promoter databases for the analysis of gene sets and co-occurrence of transcription factor binding motifs
Cited by: 33
Author(s): Srinivas Veerla, Markus Ringnér, Mattias Höglund
Software Mentions: 2
Published: over 14 years ago
10.1186/s12864-021-07618-x
Population genetic considerations for using biobanks as international resources in the pandemic era and beyond
Cited by: 11
Author(s): Hannah Carress, Daniel Lawson, Eran Elhaik
Software Mentions: 2
Published: over 3 years ago
10.1186/1471-2407-8-138
A novel diffuse gastric cancer susceptibility variant in E-cadherin (CDH1) intron 2: A case control study in an Italian population
Cited by: 13
Author(s): Soroush Nasri, Helen More, Francesco Graziano, Annamaria Ruzzo, Emily Wilson, Anita K. Dunbier, Cushla McKinney, Tony R. Merriman, Parry Guilford, Mauro Magnani, Bostjan Humar
Software Mentions: 2
Published: over 16 years ago
10.1186/1471-2105-11-555
The LabelHash algorithm for substructure matching
Cited by: 30
Author(s): Mark Moll, Drew Bryant, Lydia E. Kavraki
Software Mentions: 2
Published: about 14 years ago
10.1186/1471-2105-6-S4-S5
Query3d: a new method for high-throughput analysis of functional residues in protein structures
Cited by: 45
Author(s): Gabriele Ausiello, Allegra Via, Manuela Helmer-Citterich
Software Mentions: 2
Published: almost 19 years ago
10.1186/s13017-016-0078-1
Wells criteria for DVT is a reliable clinical tool to assess the risk of deep venous thrombosis in trauma patients
Cited by: 59
Author(s): Shrey Modi, Ryan Deisler, Karen Gozel, Patty Reicks, Eric D. Irwin, Melissa E. Brunsvold, Kaysie Banton, Greg J. Beilman
Software Mentions: 2
Published: over 8 years ago
10.1038/srep25632
Impacts of biogeographic history and marginal population genetics on species range limits: a case study of Liriodendron chinense
Cited by: 38
Author(s): Aihong Yang, Christopher W. Dick, Xia Yao, Hongwen Huang
Software Mentions: 2
Published: over 8 years ago
10.3389/fpls.2020.612258
Geo-Climatic Changes and Apomixis as Major Drivers of Diversification in the Mediterranean Sea Lavenders (Limonium Mill.)
Cited by: 9
Author(s): Konstantina Koutroumpa, Ben Warren, Spyros Theodoridis, Mario Coiro, Maria M. Romeiras, Ares Jiménez, Elena Conti
Software Mentions: 2
Published: almost 4 years ago
10.3390/genes8100289
Identification of Gene Expression Changes in the Aorta of ApoE Null Mice Fed a High-Fat Diet
Cited by: 5
Author(s): Dan Xi, Jian Zhao, Miao Zhao, Weijun Fu, Zhigang Guo, Hui Chen
Software Mentions: 2
Published: about 7 years ago
10.1186/1471-2105-7-81
Transcriptomic response to differentiation induction
Cited by: 1
Author(s): Geoffrey W. Patton, Robert M. Stephens, Igor A. Sidorov, Xiao Xue, Richard A. Lempicki, D.S. Dimitrov, Robert H. Shoemaker, Gabriela Tudor
Software Mentions: 2
Published: almost 19 years ago
10.1590/1678-4685-gmb-2016-0025
Genetic diversity of Morato's Digger Toad, Proceratophrys moratoi: spatial structure, gene flow, effective size and the need for differential management strategies of populations
Cited by: 5
Author(s): Maysa Silva Arruda, William Pinheiro da Costa, Shirlei Maria Recco‐Pimentel
Software Mentions: 2
Published: over 7 years ago
10.3390/s21165590
SG-WAS: A New Wireless Autonomous Night Sky Brightness Sensor
Cited by: 7
Author(s): Miguel R. Alarcon, Marta Puig-Subirà, M. Serra, Samuel Lemes-Perera, M. Mallorquín, César López
Software Mentions: 2
Published: over 3 years ago
10.1111/eva.12565
Founder events, isolation, and inbreeding: Intercontinental genetic structure of the domestic ferret
Cited by: 11
Author(s): Kyle D. Gustafson, Michelle G. Hawkins, Tracy L. Drazenovich, Robert Church, Susan A. Brown, Holly B. Ernest
Software Mentions: 2
Published: almost 7 years ago
10.1002/ece3.2563
Assessing polar bear (<i>Ursus maritimus</i>) population structure in the Hudson Bay region using<scp>SNP</scp>s
Cited by: 54
Author(s): Michelle Viengkone, Andrew E. Derocher, Evan S. Richardson, René M. Malenfant, Joshua M. Miller, Martyn E. Obbard, Markus Dyck, Nicholas J. Lunn, Vicki Sahanatien, Corey S. Davis
Software Mentions: 2
Published: about 8 years ago
10.1002/ece3.5112
Landscape effects on the contemporary genetic structure of Ruffed Grouse (<i>Bonasa umbellus</i>) populations
Cited by: 18
Author(s): Ashley M. Jensen, Nicholas P. O'Neil, Andrew N. Iwaniuk, Theresa M. Burg
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2148-11-120
Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes
Cited by: 38
Author(s): Kelly E. O’Quin, Daniel A. Smith, Zan Naseer, Jane E. Schulte, Samuel D Engel, Yong-Hwee Eddie Loh, J. Todd Streelman, Jeffrey L. Boore, Karen L. Carleton
Software Mentions: 2
Published: over 13 years ago
10.1002/ece3.741
Effects of structural connectivity on fine scale population genetic structure of muskrat,<i>Ondatra zibethicus</i>
Cited by: 14
Author(s): Sophie Laurence, Matthew J. Smith, Albrecht I. Schulte‐Hostedde
Software Mentions: 2
Published: about 11 years ago
10.1016/j.crbiot.2019.09.001
Increased mAb production in amplified CHO cell lines is associated with increased interaction of CREB1 with transgene promoter
Cited by: 10
Author(s): Hussain Dahodwala, Prashant Kaushik, Vijay Tejwani, Chih‐Chung Kuo, Patrice Ménard, Michael Henry, Bjørn Gunnar Voldborg, Nathan E. Lewis, Paula Meleady, Susan T. Sharfstein
Software Mentions: 2
Published: about 5 years ago
10.1007/s11538-020-00724-z
Circular Tessera Codes in the Evolution of the Genetic Code
Cited by: 4
Author(s): Elena Fimmel, Martin Starman, Lutz Strüngmann
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0154046
Rational Structure-Based Rescaffolding Approach to De Novo Design of Interleukin 10 (IL-10) Receptor-1 Mimetics
Cited by: 2
Author(s): Gloria Ruiz-Gómez, John C. Hawkins, Patrick Jenny, Georg Künze, Robert Wodtke, Reik Löser, Karim Fahmy, M. Teresa Pisabarro
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0186345
A Lagrangian meshfree method applied to linear and nonlinear elasticity
Cited by: 0
Author(s): Wade A. Walker
Software Mentions: 2
Published: about 7 years ago
10.1186/s12862-020-01642-3
Phylogenetic and spatial distribution of evolutionary diversification, isolation, and threat in turtles and crocodilians (non-avian archosauromorphs)
Cited by: 32
Author(s): Timothy J. Colston, Pallavi Kulkarni, Walter Jetz, R. Alexander Pyron
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0182515
Altitudinal gradients, biogeographic history and microhabitat adaptation affect fine-scale spatial genetic structure in African and Neotropical populations of an ancient tropical tree species
Cited by: 24
Author(s): Paloma Torroba-Balmori, Katharina B. Budde, Katrin Heer, Santiago C. González‐Martínez, Sanna Olsson, Caroline Scotti‐Saintagne, Maxime Casalis, Bonaventure Sonké, Christopher W. Dick, Myriam Heuertz
Software Mentions: 2
Published: over 7 years ago
10.3389/fnint.2012.00113
The Interplay between Emotion and Cognition in Autism Spectrum Disorder: Implications for Developmental Theory
Cited by: 91
Author(s): Sebastian Gaigg
Software Mentions: 2
Published: almost 13 years ago
10.1371/journal.pone.0193495
Assessment of genetic diversity, population structure, and gene flow of tigers (Panthera tigris tigris) across Nepal's Terai Arc Landscape
Cited by: 25
Author(s): Kanchan Thapa, Sulochana Manandhar, Manisha Bista, Jivan Shakya, Govind Sah, Maheshwar Dhakal, Netra Prasad Sharma, Bronwyn Llewellyn, Claudia Wultsch, Lisette P. Waits, Marcella J. Kelly, Jean‐Marc Hero, Jane Hughes, Dibesh Karmacharya
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0040540
Protein Surface Matching by Combining Local and Global Geometric Information
Cited by: 15
Author(s): Leif Ellingson, Jinfeng Zhang
Software Mentions: 2
Published: over 12 years ago
10.1186/s12862-016-0587-2
Long-term persisting hybrid swarm and geographic difference in hybridization pattern: genetic consequences of secondary contact between two Vincetoxicum species (Apocynaceae–Asclepiadoideae)
Cited by: 8
Author(s): Yue Li, Fumito Tada, Tadashi Yamashiro, Masayuki Morita
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0052353
Duplication of C7orf58, WNT16 and FAM3C in an Obese Female with a t(7;22)(q32.1;q11.2) Chromosomal Translocation and Clinical Features Resembling Coffin-Siris Syndrome
Cited by: 5
Author(s): Jun Zhu, Jun Qiu, Gregg Magrane, Malak Abedalthagafi, Andrea Zanko, Mahin Golabi, Farid Chehab
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0026694
Estimating Gene Flow between Refuges and Crops: A Case Study of the Biological Control of Eriosoma lanigerum by Aphelinus mali in Apple Orchards
Cited by: 19
Author(s): Blas Lavandero, Christian C. Figueroa, Pierre Franck, Angela Mendez
Software Mentions: 2
Published: about 13 years ago
10.1371/journal.pone.0193837
Zoonotic Babesia microti in the northeastern U.S.: Evidence for the expansion of a specific parasite lineage
Cited by: 28
Author(s): Heidi K. Goethert, Philip J. Molloy, Victor P. Berardi, Karen E. Weeks, Sam R. Telford
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0162504
Characterization of the Mouse and Human Monoacylglycerol O-Acyltransferase 1 (Mogat1) Promoter in Human Kidney Proximal Tubule and Rat Liver Cells
Cited by: 11
Author(s): Shireesha Sankella, Abhimanyu Garg, Anil K. Agarwal
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0091240
High Precision Prediction of Functional Sites in Protein Structures
Cited by: 15
Author(s): Ljubomir Buturović, Mike Wong, Gale L. Tang, Russ B. Altman, Dragutin Petković
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0000366
Human GLI3 Intragenic Conserved Non-Coding Sequences Are Tissue-Specific Enhancers
Cited by: 41
Author(s): Amir Ali Abbasi, Zissis Paparidis, Sajid Malik, Debbie K. Goode, Heather Callaway, Greg Elgar, Karl‐Heinz Grzeschik
Software Mentions: 2
Published: over 17 years ago
10.1186/s12885-015-1043-1
YY1 suppresses FEN1 over-expression and drug resistance in breast cancer
Cited by: 46
Author(s): Jianwei Wang, Lina Zhou, Zhi Li, Ting Zhang, Wenpeng Liu, Zheng Liu, Yate-Ching Yuan, Feng Su, Xu Lu, Yan Wang, Xiaotong Zhou, Hong Xu, Yuejin Hua, Yingjie Wang, Li Zheng, Yuee Teng, Binghui Shen
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pone.0040711
Identification and Dissection of Four Major QTL Affecting Milk Fat Content in the German Holstein-Friesian Population
Cited by: 77
Author(s): Xiaolong Wang, Christine Wurmser, Hubert Pausch, Simone Jung, F Reinhardt, Jens Tetens, Georg Thaller, R. Fries
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0000594
Comprehensive Expression Profiling of Tumor Cell Lines Identifies Molecular Signatures of Melanoma Progression
Cited by: 240
Author(s): Byungwoo Ryu, Dave S. Kim, Amena M. DeLuca, Rhoda M. Alani
Software Mentions: 2
Published: over 17 years ago
10.1371/journal.pone.0107133
Characterization of Transcription Factor Networks Involved in Umbilical Cord Blood CD34+ Stem Cells-Derived Erythropoiesis
Cited by: 7
Author(s): Biaoru Li, Lianghao Ding, Chin‐Rang Yang, Baolin Kang, Li Liu, Michael D. Story, Betty S. Pace
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0101821
AFLPs and Mitochondrial Haplotypes Reveal Local Adaptation to Extreme Thermal Environments in a Freshwater Gastropod
Cited by: 24
Author(s): María Quintela, Magnus Johansson, Bjarni K. Kristjánsson, Rodolfo Barreiro, Anssi Laurila
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pgen.1005946
MiR144/451 Expression Is Repressed by RUNX1 During Megakaryopoiesis and Disturbed by RUNX1/ETO
Cited by: 17
Author(s): Nicole Kohrs, Stephan Kolodziej, Olga N. Kuvardina, Julia Herglotz, Jasmin Yillah, Stefanie Herkt, Alexander Piechatzek, Gabriela Salinas Riester, Thomas Lingner, Christian Wichmann, Halvard Bönig, Erhard Seifried, Uwe Platzbecker, Hind Medyouf, Manuel Grez, Jörn Lausen
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0103595
Microhabitat Types Promote the Genetic Structure of a Micro-Endemic and Critically Endangered Mole Salamander (Ambystoma leorae) of Central Mexico
Cited by: 17
Author(s): Armando Sunny, Octavio Monroy‐Vilchis, Carlos Reyna-Valencia, Martha M. Zarco‐González
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0093387
High Risks of Losing Genetic Diversity in an Endemic Mauritian Gecko: Implications for Conservation
Cited by: 6
Author(s): Steeves Buckland, Nik C. Cole, Jim J. Groombridge, Clemens Küpper, Terry Burke, Deborah A. Dawson, Laura E. Gallagher, Stephen Harris
Software Mentions: 2
Published: over 10 years ago
10.7717/peerj.5495
What affects power to estimate speciation rate shifts?
Cited by: 13
Author(s): Ullasa Kodandaramaiah, Gopal Murali
Software Mentions: 2
Published: over 6 years ago
10.1186/1471-2105-9-372
Computational detection of significant variation in binding affinity across two sets of sequences with application to the analysis of replication origins in yeast
Cited by: 7
Author(s): Uri Keich, Hong Gao, John S. Garretson, Anand Bhaskar, Ivan Liachko, Justin J. Donato, Bik Kwoon Tye
Software Mentions: 2
Published: about 16 years ago
10.7717/peerj.1092
A population genetic assessment of coral recovery on highly disturbed reefs of the Keppel Island archipelago in the southern Great Barrier Reef
Cited by: 18
Author(s): Madeleine J. H. van Oppen, Vimoksalehi Lukoschek, Ray Berkelmans, Lesa M. Peplow, Alison Jones
Software Mentions: 2
Published: over 9 years ago
10.1186/s12863-019-0801-5
Population genetic structure and habitat connectivity for jaguar (Panthera onca) conservation in Central Belize
Cited by: 10
Author(s): Angélica Menchaca, Natália Rossi, Jérémy S.P. Froidevaux, Isabela Dias-Freedman, Anthony Caragiulo, Claudia Wultsch, Bart J. Harmsen, Rebecca J. Foster, J. Antonio de la Torre, Rodrigo A. Medellín, Salisa Rabinowitz, George Amato
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0134257
Inferring Population Genetic Structure in Widely and Continuously Distributed Carnivores: The Stone Marten (Martes foina) as a Case Study
Cited by: 31
Author(s): María Vergara, Mafalda Basto, María José Madeira, Benjamín J. Gómez‐Moliner, Margarida Santos‐Reis, Carlos Fernandes, Aritz Ruiz‐González
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0043524
Signature of a Pre-Human Population Decline in the Critically Endangered Reunion Island Endemic Forest Bird Coracina newtoni
Cited by: 20
Author(s): Jordi Salmona, Marc Salamolard, Damien Fouillot, Thomas Ghestemme, Jerry Larose, Jean-François Centon, Vítor C. Sousa, Deborah A. Dawson, Christophe Thébaud, Lounès Chikhi
Software Mentions: 2
Published: over 12 years ago
10.3389/fphys.2019.00125
Identification of Gene Expression Changes Associated With Uterine Receptivity in Mice
Cited by: 16
Author(s): Jia-Peng He, Miao Zhao, Wenqian Zhang, Mingyu Huang, Can Zhu, Hao-Zhuang Cheng, Ji‐Long Liu
Software Mentions: 2
Published: almost 6 years ago
10.1007/s11214-016-0254-3
Exoplanetary Atmospheres—Chemistry, Formation Conditions, and Habitability
Cited by: 165
Author(s): Nikku Madhusudhan, M. Agúndez, J. I. Moses, Yongyun Hu
Software Mentions: 2
Published: over 8 years ago