Ecosyste.ms: Papers

10.3390/e22040427

Fifteen Years of Gene Set Analysis for High-Throughput Genomic Data: A Review of Statistical Approaches and Future Challenges
Cited by: 30
Author(s): Das S, Craig J. McClain, N. Shesh
Software Mentions: 7
Published: over 4 years ago

10.1038/s42003-021-02553-9

QSPcc reduces bottlenecks in computational model simulations
Cited by: 2
Author(s): Danilo Tomasoni, Alessio Paris, Stefano Giampiccolo, Federico Reali, Giulia Simoni, Luca Marchetti, Chanchala Kaddi, Susana Neves-Zaph, Corrado Priami, Karim Azer, Rosario Lombardo
Software Mentions: 7
Published: over 3 years ago

10.1186/s12915-021-01134-w

Comparative analysis reveals within-population genome size variation in a rotifer is driven by large genomic elements with highly abundant satellite DNA repeat elements
Cited by: 7
Author(s): Claus‐Peter Stelzer, Julie Blommaert, Ann‐Marie Waldvogel, Maria Pichler, Bette Hecox-Lea, David Welch
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0221934

Stability and changes in the distribution of Pipiza hoverflies (Diptera, Syrphidae) in Europe under projected future climate conditions
Cited by: 9
Author(s): Dubravka Milić, Snežana Radenković, Dimitrije Radišić, Andrijana Andrić, Tijana Nikolić, Ante Vujić
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0032724

Deep-Sequencing Protocols Influence the Results Obtained in Small-RNA Sequencing
Cited by: 33
Author(s): Joern Toedling, Nicolas Servant, Constance Ciaudo, Laurent Farinelli, Olivier Voinnet, Edith Heard, Emmanuel Barillot
Software Mentions: 6
Published: almost 13 years ago

10.1038/s41436-018-0337-5

Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions
Cited by: 65
Author(s): Sulev Reisberg, Kristi Krebs, Maarja Lepamets, Mart Kals, Reedik Mägi, Kristjan Metsalu, Volker M. Lauschke, Jaak Vilo, Lili Milani
Software Mentions: 6
Published: over 5 years ago

10.1111/gcb.15118

Climate change causes critical transitions and irreversible alterations of mountain forests
Cited by: 91
Author(s): Katharina Albrich, Werner Rammer, Rupert Seidl
Software Mentions: 5
Published: over 4 years ago

10.3390/ijerph18073370

The Academic Landscapes of Manufacturing Enterprise Performance and Environmental Sustainability: A Study of Commonalities and Differences
Cited by: 7
Author(s): Cristian Mejía, Yuya Kajikawa
Software Mentions: 5
Published: over 3 years ago

10.1093/gigascience/giz071

The genome assembly and annotation of yellowhorn (Xanthoceras sorbifolium Bunge)
Cited by: 35
Author(s): Liang Qiang, Huayang Li, Shouke Li, Fuling Yuan, Jiantong Sun, Qicheng Duan, Qingyun Li, Rui Zhang, Ya Lin Sang, Nian Wang, Xiangwen Hou, Ke Yang, Jian Ning Liu, Long Yang
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-67491-8

Modelling sexually deceptive orchid species distributions under future climates: the importance of plant–pollinator interactions
Cited by: 27
Author(s): Spyros Tsiftsis, Vladan Djordjević
Software Mentions: 5
Published: over 4 years ago

10.36834/cmej.70106

Dedicated Poster Abstracts
Cited by: 0
Author(s): Heather Hickey
Software Mentions: 5
Published: over 4 years ago

10.1016/j.scitotenv.2021.145996

Modeling the potential impacts of climate change and adaptation strategies on groundnut production in India
Cited by: 11
Author(s): M D M Kadiyala, Swamikannu Nedumaran, Jyosthnaa Padmanabhan, Murali Krishna Gumma, Sridhar Gummadi, Srinivas Reddy Srigiri, Richard D. Robertson, Anthony Whitbread
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.5877

Assessing the exposure of forest habitat types to projected climate change—Implications for Bavarian protected areas
Cited by: 4
Author(s): Claudia Steinacker, Carl Beierkuhnlein, Anja Jaeschke
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2021.612382

High-Resolution Transcriptome Atlas and Improved Genome Assembly of Common Buckwheat, Fagopyrum esculentum
Cited by: 15
Author(s): Aleksey A. Penin, Artem S. Kasianov, Anna V. Klepikova, Ilya Kirov, Evgeny S. Gerasimov, А Н Фесенко, Maria D. Logacheva
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13073-019-0651-9

Implementation of a genomic medicine multi-disciplinary team approach for rare disease in the clinical setting: a prospective exome sequencing case series
Cited by: 20
Author(s): Jenny C Taylor, Judith Craft, Edward Blair, Sarah Wordsworth, David Beeson, Saleel Chandratre, Judith Cossins, Tracy Lester, Andrea H. Németh, Elizabeth Ormondroyd, Smita Y. Patel, Alistair T. Pagnamenta, Jenny C Taylor, Kate Thomson, Hugh Watkins, Wilkie Aom., Julian C. Knight
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.00829

Evolutionary History of the Marchantia polymorpha Complex
Cited by: 9
Author(s): Anna Malin Linde, Weerachon Sawangproh, Nils Cronberg, Péter Szövényi, Ulf Lagercrantz
Software Mentions: 4
Published: over 4 years ago

10.1002/fes3.172

Ex‐ante evaluation of promising soybean innovations for sub‐Saharan Africa
Cited by: 5
Author(s): Sika Gbegbelegbe, Arega D. Alene, Alpha Y. Kamara, Keith Wiebe, Víctor M. Manyong, Tahirou Abdoulaye, Petros Mkandawire
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0240841

Risk screening methods for extreme heat: Implications for equity-oriented adaptation
Cited by: 3
Author(s): Lynée L. Turek-Hankins, Miyuki Hino, Katharine J. Mach
Software Mentions: 4
Published: about 4 years ago

10.3390/metabo11040237

Improved One-Class Modeling of High-Dimensional Metabolomics Data via Eigenvalue-Shrinkage
Cited by: 3
Author(s): A Brini, Vahe Avagyan, Ric C. H. de Vos, Jack H. Vossen, Edwin R. van den Heuvel, Jasper Engel
Software Mentions: 4
Published: over 3 years ago

10.1093/gigascience/giy062

Massive NGS data analysis reveals hundreds of potential novel gene fusions in human cell lines
Cited by: 6
Author(s): Silvia Gioiosa, Marco Bolis, Tiziano Flati, Annalisa Massini, Enrico Garattini, Giovanni Chillemi, Maddalena Fratelli, Tiziana Castrignanò
Software Mentions: 3
Published: over 6 years ago

10.3758/s13428-019-01237-x

Gorilla in our midst: An online behavioral experiment builder
Cited by: 617
Author(s): Alexander Anwyl-Irvine, Jessica Massonnié, Adam Flitton, Natasha Z. Kirkham, Jo K Evershed
Software Mentions: 3
Published: over 5 years ago

10.1038/s41597-020-00669-x

Global land use for 2015–2100 at 0.05° resolution under diverse socioeconomic and climate scenarios
Cited by: 65
Author(s): Min Chen, Chris R. Vernon, Neal Graham, Mohamad Hejazi, Maoyi Huang, Yanyan Cheng, Katherine Calvin
Software Mentions: 3
Published: about 4 years ago

10.1186/s13073-020-0712-0

A highly sensitive and specific workflow for detecting rare copy-number variants from exome sequencing data
Cited by: 37
Author(s): Ramakrishnan Rajagopalan, Jill R. Murrell, Minjie Luo, Laura K. Conlin
Software Mentions: 3
Published: almost 5 years ago

10.1186/gm461

Exome sequencing resolves apparent incidental findings and reveals further complexity of SH3TC2 variant alleles causing Charcot-Marie-Tooth neuropathy
Cited by: 134
Author(s): James R. Lupski, Claudia Gonzaga‐Jauregui, Yaping Yang, Matthew N. Bainbridge, Shalini N. Jhangiani, Christian Buhay, Christie Kovar, Min Wang, Alicia Hawes, Jeffrey G. Reid, Christine M. Eng, Donna M. Muzny, Richard A. Gibbs
Software Mentions: 3
Published: over 11 years ago

10.1111/gcb.13247

From global to regional and back again: common climate stressors of marine ecosystems relevant for adaptation across five ocean warming hotspots
Cited by: 71
Author(s): Ekaterina Popova, Andrew Yool, Valborg Byfield, Kevern L. Cochrane, Andrew C. Coward, Shyam S. Salim, Maria A. Gasalla, Stephanie A. Henson, Alistair J. Hobday, Gretta T. Pecl, W. H. H. Sauer, Michael J. Roberts
Software Mentions: 3
Published: almost 9 years ago

10.1111/gcb.14677

Effects of 21st‐century climate, land use, and disturbances on ecosystem carbon balance in California
Cited by: 27
Author(s): Benjamin M. Sleeter, David C. Marvin, D. Richard Cameron, Paul C. Selmants, A. L. Westerling, Jason Kreitler, Colin J. Daniel, Jinxun Liu, Tamara S. Wilson
Software Mentions: 3
Published: over 5 years ago

10.1002/jcc.26035

Force‐field parametrization based on radial and energy distribution functions
Cited by: 1
Author(s): Shuntaro Chiba, Yasushi Okuno, Teruki Honma, Mitsunori Ikeguchi
Software Mentions: 3
Published: over 5 years ago

10.1534/g3.112.004994

Resequencing and Comparative Genomics of <i>Stagonospora nodorum</i>: Sectional Gene Absence and Effector Discovery
Cited by: 45
Author(s): Robert A. Syme, James K. Hane, Timothy L. Friesen, Richard P. Oliver
Software Mentions: 3
Published: over 11 years ago

10.3389/fpubh.2021.611152

Modeling the Potential Distribution of the Malaria Vector Anopheles (Ano.) pseudopunctipennis Theobald (Diptera: Culicidae) in Arid Regions of Northern Chile
Cited by: 9
Author(s): Lara Valderrama, Salvador Ayala, Carolina Reyes, Christian González
Software Mentions: 3
Published: over 3 years ago

10.3390/ma13061377

The Critical Raw Materials in Cutting Tools for Machining Applications: A Review
Cited by: 72
Author(s): A. Rizzo, Saurav Goel, Maria Luisa Grilli, Iglesias Rodríguez, L. Jaworska, Vjačeslavs Lapkovskis, Pavel Novák, Bogdan Postolnyi, D. Valerini
Software Mentions: 3
Published: almost 5 years ago

10.3389/fnbot.2016.00006

Design of Spiking Central Pattern Generators for Multiple Locomotion Gaits in Hexapod Robots by Christiansen Grammar Evolution
Cited by: 20
Author(s): Andrés Espinal, Horacio Rostro-González, Martín Carpio, Erick Israel Guerra-Hernandez, Manuel Ornelas-Rodríguez, Marco Aurelio Sotelo-Figueroa
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0210786

Complex harmonic regularization with differential evolution in a memetic framework for biomarker selection
Cited by: 6
Author(s): Sai Wang, Haiwei Shen, Hua Chai, Yong Liang
Software Mentions: 3
Published: almost 6 years ago

10.1002/evl3.91

Gene flow improves fitness at a range edge under climate change
Cited by: 63
Author(s): Megan Bontrager, Amy L. Angert
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0183785

Model uncertainties do not affect observed patterns of species richness in the Amazon
Cited by: 22
Author(s): Lílian P. Sales, Olívia Viana Neves, Paulo de Marco Júnior, Rafael Loyola
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0251027

Red List assessment of amphibian species of Ecuador: A multidimensional approach for their conservation
Cited by: 25
Author(s): H. Mauricio Ortega‐Andrade, Marina Rodes-Blanco, Diego F. Cisneros‐Heredia, Nereida Guerra Arévalo, Karima Gabriela López de Vargas-Machuca, Juan C. Sánchez-Nivicela, Diego Armijos-Ojeda, José F. Andrade, Carolina Reyes-Puig, Amanda Belén Quezada Riera, Paul Székely, Octavio R. Rojas-Soto, Diana Székely, Juan M. Guayasamín, Fausto Rodrigo Siavichay Pesántez, Luís Amador, Raquel Betancourt, Salomón M. Ramírez-Jaramillo, Bruno Timbe-Borja, Miguel Gómez Laporta, Juan Fernando Webster Bernal, Luis Alfredo Oyagata Cachimuel, Daniel Chávez Jácome, Valentina Posse, Carlos Valle-Piñuela, Daniel Padilla Jiménez, Juan Pablo Reyes-Puig, Andrea Terán-Valdéz, Luis A. Coloma, Ma. Beatriz Pérez Lara, Sofía Carvajal-Endara, Miguel A. Urgilés, Mario H. Yánez-Muñoz
Software Mentions: 3
Published: over 3 years ago

10.3389/fnins.2016.00496

Benchmarking Spike-Based Visual Recognition: A Dataset and Evaluation
Cited by: 27
Author(s): Qian Liu, Garibaldi Pineda García, Evangelos Stromatias, Teresa Serrano-Gotarredona, Steve Furber
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0183583

How will climate change pathways and mitigation options alter incidence of vector-borne diseases? A framework for leishmaniasis in South and Meso-America
Cited by: 33
Author(s): Bethan V. Purse, Dario Masante, Nick Golding, David M. Pigott, John C. Day, Sergio Ibáñez-Bernal, Mélanie Kolb, Laurence Jones
Software Mentions: 3
Published: about 7 years ago

10.1038/s41436-020-01071-z

A pathogenic UFSP2 variant in an autosomal recessive form of pediatric neurodevelopmental anomalies and epilepsy
Cited by: 9
Author(s): Min Ni, Bushra Afroze, Chao Xing, Chunxiao Pan, Yanqiu Shao, Ling Cai, Brandi L. Cantarel, Jimin Pei, Nick V. Grishin, Stacy Hewson, Devon Knight, Sonal Mahida, Donnice Michel, Mark A. Tarnopolsky, Annapurna Poduri, Alexander Rotenberg, Neal Sondheimer, Ralph J. DeBerardinis
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0046334

A Genotypic Test for HIV-1 Tropism Combining Sanger Sequencing with Ultradeep Sequencing Predicts Virologic Response in Treatment-Experienced Patients
Cited by: 51
Author(s): Ron M. Kagan, Erik P. Johnson, Martin Siaw, Pinaki Biswas, Douglass Chapman, Zhaohui Su, Jamie L. Platt, Rick L. Pesano
Software Mentions: 3
Published: about 12 years ago

10.3389/frobt.2018.00077

A User Study on Robot Skill Learning Without a Cost Function: Optimization of Dynamic Movement Primitives via Naive User Feedback
Cited by: 6
Author(s): Anna-Lisa Vollmer, Nikolas Hemion
Software Mentions: 3
Published: over 6 years ago

10.1155/2019/2537689

Arabic Sentiment Classification Using Convolutional Neural Network and Differential Evolution Algorithm
Cited by: 54
Author(s): Abdelghani Dahou, Mohamed E. Abd Elaziz, Junwei Zhou, Shengwu Xiong
Software Mentions: 3
Published: almost 6 years ago

10.15252/emmm.202013391

Utility of red‐light ultrafast optogenetic stimulation of the auditory pathway
Cited by: 17
Author(s): Burak Bali, David Lopez de la Morena, Artur Mittring, Thomas Mager, Vladan Rankovic, Antoine Huet, Tobias Moser
Software Mentions: 3
Published: over 3 years ago

10.1016/j.yjmcc.2015.11.018

Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models?
Cited by: 115
Author(s): Ross H. Johnstone, E. E. Chang, Rémi Bardenet, Teun P. de Boer, David Gavaghan, Pras Pathmanathan, Richard H. Clayton, Gary R. Mirams
Software Mentions: 3
Published: over 8 years ago

10.3390/s121216291

Multivariate and Multiscale Data Assimilation in Terrestrial Systems: A Review
Cited by: 78
Author(s): Carsten Montzka, Valentijn R. N. Pauwels, Harrie‐Jan Hendricks Franssen, Xujun Han, Harry Vereecken
Software Mentions: 3
Published: about 12 years ago

10.3390/ijerph17114175

Comparison between Communicated and Calculated Exposure Estimates Obtained through Three Modeling Tools
Cited by: 1
Author(s): Andrea Spinazzè, Francesca Borghi, Daniele Magni, Costanza Rovida, Monica Locatelli, Andrea Cattaneo, Domenico Maria Cavallo
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0242265

Adaptive volumetric light and atmospheric scattering
Cited by: 0
Author(s): Shan Tan, Jianwei Zhang, Yi Lin, Hong Liu, Menglong Yang, Wenyi Ge
Software Mentions: 3
Published: about 4 years ago

10.3390/ma14020471

Estimating a Stoichiometric Solid’s Gibbs Free Energy Model by Means of a Constrained Evolutionary Strategy
Cited by: 1
Author(s): Constantino Grau Turuelo, Sebastian Pinnau, Cornelia Breitkopf
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12931-019-1203-y

Unique patterns of lower respiratory tract microbiota are associated with inflammation and hospital mortality in acute respiratory distress syndrome
Cited by: 41
Author(s): Michihito Kyo, Keisuke Nishioka, Takaaki Nakaya, Yoshiko Kida, Yuko Tanabe, Shinichiro Ohshimo, Nobuaki Shime
Software Mentions: 2
Published: about 5 years ago

10.1186/1756-0381-6-7

Optimization and visualization of the edge weights in optimal assignment methods for virtual screening
Cited by: 1
Author(s): Lars Rosenbaum, Andreas Jahn, Alexander Dörr, Andreas Zell
Software Mentions: 2
Published: over 11 years ago

10.1016/j.pmedr.2021.101425

Does organized sports participation in childhood and adolescence positively influence health? A review of reviews
Cited by: 11
Author(s): Helga Birgit Bjørnarå, Thomas Westergren, Ellen Sejersted, Monica Klungland Torstveit, Bjørge Herman Hansen, Sveinung Berntsen, Elling Bere
Software Mentions: 2
Published: over 3 years ago

10.1111/1365-2745.13502

Do bark beetle outbreaks amplify or dampen future bark beetle disturbances in Central Europe?
Cited by: 44
Author(s): Andreas Sommerfeld, Werner Rammer, Marco Heurich, Torben Hilmers, Jörg Müller, Rupert Seidl
Software Mentions: 2
Published: about 4 years ago

10.1177/1088868320914208

Victims, Vignettes, and Videos: Meta-Analytic and Experimental Evidence That Emotional Impact Enhances the Derogation of Innocent Victims
Cited by: 11
Author(s): Rael J. Dawtry, Mitchell J. Callan, Annelie J. Harvey, Ana I. Gheorghiu
Software Mentions: 2
Published: over 4 years ago

10.1007/s10822-015-9839-2

Statistical dictionaries for hypothetical in silico model of the early-stage intermediate in protein folding
Cited by: 8
Author(s): Barbara Kalinowska, Piotr Fabian, Katarzyna Stąpor, Irena Roterman
Software Mentions: 2
Published: over 9 years ago

10.1186/s13002-019-0343-y

Local perceptions and factors determining ecosystem services identification around two forest reserves in Northern Benin
Cited by: 25
Author(s): Gérard Nounagnon Gouwakinnou, Séverin Biaou, Fifanou G. Vodouhê, Marc Sèwanou Tovihessi, Beranger Awessou, Samadori Sorotori Honoré Biaou
Software Mentions: 2
Published: about 5 years ago

10.1038/srep25031

Local adaptation to temperature and precipitation in naturally fragmented populations of Cephalotaxus oliveri, an endangered conifer endemic to China
Cited by: 27
Author(s): Ting Wang, Zhen Wang, Fan Xia, Yingjuan Su
Software Mentions: 2
Published: over 8 years ago

10.1136/bmjopen-2018-025752

Development and pilot of a multicriteria decision analysis (MCDA) tool for health services administrators
Cited by: 10
Author(s): Robin Blythe, Shamesh Naidoo, Cameron Abbott, Geoffrey Bryant, Amanda Dines, Nicholas Graves
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.111

A computational method for the systematic screening of reaction barriers in enzymes: searching for<i>Bacillus circulans</i>xylanase mutants with greater activity towards a synthetic substrate
Cited by: 7
Author(s): Martin R. Hediger, Casper Steinmann, Luca De Vico, Jan H. Jensen
Software Mentions: 2
Published: over 11 years ago

10.1016/j.parepi.2021.e00205

Surveillance of foodborne parasitic diseases in Europe in a One Health approach
Cited by: 21
Author(s): Joke van der Giessen, Gunita Deksne, María Ángeles Gómez Morales, Karin Troell, Jacinto Gomes, Smaragda Sotiraki, Mirosław Różycki, István Kucsera, Olgica Djurković–Djaković, Lucy J. Robertson
Software Mentions: 2
Published: over 3 years ago

10.1111/gcb.14604

Effects of mesophyll conductance on vegetation responses to elevated CO₂ concentrations in a land surface model
Cited by: 34
Author(s): Jürgen Knauer, Sönke Zaehle, Martin G. De Kauwe, Nur H. A. Bahar, John R. Evans, Belinda E. Medlyn, Markus Reichstein, Christiane Werner
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12913-018-3387-0

Frameworks for self-management support for chronic disease: a cross-country comparative document analysis
Cited by: 30
Author(s): Selena O’Connell, Vera J. C. McCarthy, Eileen Savage
Software Mentions: 2
Published: over 6 years ago

10.3390/biology10040311

A Retrospective Analysis of the COVID-19 Pandemic Evolution in Italy
Cited by: 7
Author(s): Anna Fochesato, Giulia Simoni, Federico Reali, Giulia Giordano, Enrico Domenici, Luca Marchetti
Software Mentions: 2
Published: over 3 years ago

10.1098/rsos.170770

Genotype-specific relationships among phosphorus use, growth and abundance in <i>Daphnia pulicaria</i>
Cited by: 15
Author(s): Ryan E. Sherman, Priyanka Chowdhury, Kristina Baker, Lawrence J. Weider, Punidan D. Jeyasingh
Software Mentions: 2
Published: about 7 years ago

10.1016/j.heliyon.2019.e01266

Global crop output and irrigation water requirements under a changing climate
Cited by: 12
Author(s): Victor Nechifor, Matthew Winning
Software Mentions: 2
Published: almost 6 years ago

10.1002/2016GL072418

On the role of ozone feedback in the ENSO amplitude response under global warming
Cited by: 30
Author(s): Peer Nowack, Peter Braesicke, N. L. Abraham, J. A. Pyle
Software Mentions: 2
Published: over 7 years ago

10.3390/molecules25173945

Unravelling the Photoprotective Mechanisms of Nature-Inspired Ultraviolet Filters Using Ultrafast Spectroscopy
Cited by: 28
Author(s): Temitope T. Abiola, Abigail L. Whittock, Vasilios G. Stavros
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-015-2013-3

Identifying specific proteins involved in eggshell membrane formation using gene expression analysis and bioinformatics
Cited by: 45
Author(s): Jingwen Du, Maxwell T. Hincke, Megan Rose-Martel, Christelle Hennequet-Antier, Aurélien Brionne, Larry A. Cogburn, Yves Nys, Joël Gautron
Software Mentions: 2
Published: about 9 years ago

10.1038/s41436-018-0137-y

TANGO2: expanding the clinical phenotype and spectrum of pathogenic variants
Cited by: 40
Author(s): Jennifer N. Dines, Katie Golden‐Grant, Amy J. LaCroix, Alison M. Muir, Dianne Laboy Cintrón, Kirsty McWalter, Megan T. Cho, Angela Sun, J. Lawrence Merritt, Jenny Thies, Dmitriy Niyazov, Barbara K. Burton, Katherine Kim, Leah Fleming, Rachel Westman, Peter Karachunski, Joline Dalton, Alice Basinger, Can Fıçıcıoğlu, Ingo Helbig, Manuela Pendziwiat, Hiltrud Muhle, Katherine L. Helbig, Almuth Caliebe, René Santer, Kolja Becker, Sharon F. Suchy, Ganka Douglas, Francisca Millan, Amber Begtrup, Kristin G. Monaghan, Heather C Mefford
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12968-015-0108-2

T2 mapping of the heart with a double-inversion radial fast spin-echo method with indirect echo compensation
Cited by: 11
Author(s): Tomoe Hagio, Chuan-Chin Huang, Aiden Abidov, Jaspreet Singh, Bujji Ainapurapu, Scott Squire, Denise Bruck, María I. Altbach
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep43988

Geographical variation in morphology of Chaetosiphella stipae stipae Hille Ris Lambers, 1947 (Hemiptera: Aphididae: Chaitophorinae)
Cited by: 5
Author(s): Karina Wieczorek, Agnieszka Bugaj‐Nawrocka, Mariusz Kanturski, Gary L. Miller
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0243047

Global risk of invasion by Bactrocera zonata: Implications on horticultural crop production under changing climatic conditions
Cited by: 22
Author(s): Kumbirai M. Zingore, G. Sithole, Elfatih M. Abdel‐Rahman, Samira A. Mohamed, Sunday Ekesi, Chrysantus M. Tanga, Mohammed E. E. Mahmoud
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0197803

No free lunch in ball catching: A comparison of Cartesian and angular representations for control
Cited by: 3
Author(s): Sebastian Höfer, Jörg Raisch, Marc Toussaint, Oliver Brock
Software Mentions: 2
Published: over 6 years ago

10.3389/fped.2021.526779

Genetic Testing in Neurodevelopmental Disorders
Cited by: 67
Author(s): Juliann M. Savatt, Scott M. Myers
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0105221

Elevated Levels of Circulating DNA in Cardiovascular Disease Patients: Metagenomic Profiling of Microbiome in the Circulation
Cited by: 140
Author(s): Vasudevan Dinakaran, Andiappan Rathinavel, Pushpanathan Muthuirulan, R Sivakumar, Paramasamy Gunasekaran, Jeyaprakash Rajendhran
Software Mentions: 2
Published: over 10 years ago

10.3390/genes10070521

Pangloss: A Tool for Pan-Genome Analysis of Microbial Eukaryotes
Cited by: 14
Author(s): Charley G. P. McCarthy, David A. Fitzpatrick
Software Mentions: 2
Published: over 5 years ago

10.3389/fnbot.2019.00009

Body Randomization Reduces the Sim-to-Real Gap for Compliant Quadruped Locomotion
Cited by: 9
Author(s): Alexander Vandesompele, Gabriel Urbain, Hossain Mahmud, Francis wyffels, Joni Dambre
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0205396

Probing the ecological and evolutionary history of a thermophilic cyanobacterial population via statistical properties of its microdiversity
Cited by: 13
Author(s): Michael J. Rosen, Michelle Davison, Daniel S. Fisher, Devaki Bhaya
Software Mentions: 2
Published: about 6 years ago

10.3389/fnbot.2017.00016

Morphological Properties of Mass–Spring Networks for Optimal Locomotion Learning
Cited by: 25
Author(s): Gabriel Urbain, Jonas Degrave, Benonie Carette, Joni Dambre, Francis wyffels
Software Mentions: 2
Published: over 7 years ago

10.12688/f1000research.19444.1

Exome sequencing in genetic disease: recent advances and considerations
Cited by: 21
Author(s): Jay P. Ross, Patrick A. Dion, Guy A. Rouleau
Software Mentions: 2
Published: over 4 years ago

10.1140/epjc/s10052-017-5088-y

A determination of the fragmentation functions of pions, kaons, and protons with faithful uncertainties
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Author(s): Valerio Bertone, Stefano Carrazza, Nathan P. Hartland, Emanuele R. Nocera, Juan Rojo
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2105-12-S13-S3

Building gene expression profile classifiers with a simple and efficient rejection option in R
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Author(s): Alfredo Benso, Stefano Di Carlo, Gianfranco Politano, Alessandro Savino, Hafeez Hafeezurrehman
Software Mentions: 2
Published: about 13 years ago

10.1007/s12393-021-09290-z

Application of Artificial Intelligence in Food Industry—a Guideline
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Author(s): Nidhi Rajesh Mavani, Jarinah Mohd Ali, Suhaili Othman, Mohd Azlan Hussain, Habibah Hashim, Norliza Abd Rahman
Software Mentions: 2
Published: over 3 years ago

10.3390/genes12040607

Application of Genome Sequencing from Blood to Diagnose Mitochondrial Diseases
Cited by: 6
Author(s): Rocío Rius, Alison G. Compton, Naomi L. Baker, AnneMarie E. Welch, David Coman, Maina Kava, André E. Minoche, Mark J. Cowley, David R. Thorburn, John Christodoulou
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0234713

The Spanish Osteopathic Practitioners Estimates and RAtes (OPERA) study: A cross-sectional survey
Cited by: 19
Author(s): Gerard Álvarez, Sònia Roura, Francesco Cerritelli, Jorge E. Esteves, Johan Verbeeck, Patrick L.S. van Dun
Software Mentions: 2
Published: over 4 years ago

10.1016/S2542-5196(18)30240-7

Implications for workability and survivability in populations exposed to extreme heat under climate change: a modelling study
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Author(s): Oliver Andrews, Corinne Le Quéré, Tord Kjellström, Bruno Lemke, Andy Haines
Software Mentions: 2
Published: about 6 years ago

10.3389/fcimb.2020.596917

Lactobacillus-Depleted Vaginal Microbiota in Pregnant Women Living With HIV-1 Infection Are Associated With Increased Local Inflammation and Preterm Birth
Cited by: 13
Author(s): Charlotte-Eve Short, Richard Brown, Rachael Quinlan, Yun Sok Lee, Ann Smith, Julian R. Marchesi, Robin J. Shattock, Phillip R. Bennett, Graham P. Taylor, David A. MacIntyre
Software Mentions: 2
Published: almost 4 years ago

10.3389/fncom.2016.00112

Spectral Entropy Based Neuronal Network Synchronization Analysis Based on Microelectrode Array Measurements
Cited by: 17
Author(s): Fikret Emre Kapucu, Inkeri Välkki, Jarno E. Mikkonen, Chiara Leone, Kerstin Lenk, Jarno M. A. Tanskanen, Jari Hyttinen
Software Mentions: 2
Published: about 8 years ago

10.1016/S2542-5196(21)00132-7

Projecting the risk of mosquito-borne diseases in a warmer and more populated world: a multi-model, multi-scenario intercomparison modelling study
Cited by: 128
Author(s): Felipe J. Colón‐González, Maquins Odhiambo Sewe, Adrian M. Tompkins, Henrik Sjödin, Alejandro Casallas, Joacim Rocklöv, Cyril Caminade, Rachel Lowe
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.2674

Invasive termites in a changing climate: A global perspective
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Author(s): Grzegorz Buczkowski, Cléo Bertelsmeier
Software Mentions: 2
Published: almost 8 years ago

10.3389/fonc.2020.00097

Targeting Metabolic Deregulation Landscapes in Breast Cancer Subtypes
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Author(s): Erandi A. Serrano-Carbajal, Jesús Espinal-Enríquez, Enrique Hernández‐Lemus
Software Mentions: 2
Published: almost 5 years ago

10.1002/ece3.5973

Ecological costs of climate change on marine predator–prey population distributions by 2050
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Author(s): Dinara Sadykova, Beth E. Scott, Michela De Dominicis, Sarah Wakelin, Judith Wolf, Alexander Sadykov
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2105-11-59

Comparison of evolutionary algorithms in gene regulatory network model inference
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Author(s): Alina Sîrbu, Heather J. Ruskin, Martin Crane
Software Mentions: 2
Published: almost 15 years ago

10.1002/ece3.2492

Projected changes in climatic suitability for <i>Kinosternon</i> turtles by 2050 and 2070
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Author(s): Christopher J. Butler, Brian D. Stanila, John B. Iverson, Paul A. Stone, Matthew Bryson
Software Mentions: 2
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10.1371/journal.pone.0122485

Fast and Accurate Construction of Ultra-Dense Consensus Genetic Maps Using Evolution Strategy Optimization
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Author(s): David Mester, Yefim Ronin, Patrick S. Schnable, Srinivas Aluru, Abraham B. Korol
Software Mentions: 2
Published: over 9 years ago

10.1002/ece3.7864

Integrating demography and distribution modeling for the iconic <i>Leontopodium alpinum</i> Colm. in the Romanian Carpathians
Cited by: 0
Author(s): Lăcrămioara M. Maghiar, Ilie-Adrian Stoica, Andrew J. Tanentzap
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.5034

Upward elevation and northwest range shifts for alpine <i>Meconopsis</i> species in the Himalaya–Hengduan Mountains region
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Author(s): Xie He, Kevin S. Burgess, Xuefei Yang, Antje Ahrends, Lian‐Ming Gao, Li D
Software Mentions: 2
Published: almost 6 years ago

10.1002/ece3.5251

Current and future potential distributions of three <i>Dracaena</i> Vand. ex L. species under two contrasting climate change scenarios in Africa
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Author(s): Paweł Bogawski, Theo Damen, Maciej M. Nowak, Katarzyna Pędziwiatr, Paul Wilkin, Geoffrey Mwachala, Joanna Pierzchalska, Justyna Wiland-Szymańska
Software Mentions: 2
Published: over 5 years ago

10.1093/database/baaa079

Measurement Recorder: developing a useful tool for making species descriptions that produces computable phenotypes
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Author(s): Hong Cui, Limin Zhang, Bruce A. Ford, Hsin Liang Cheng, James Macklin, Anton A. Reznicek, Julian R. Starr
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Published: almost 5 years ago

10.1371/journal.pntd.0007213

Global expansion and redistribution of Aedes-borne virus transmission risk with climate change
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Author(s): Sadie J. Ryan, Colin J. Carlson, Erin A. Mordecai, Leah R. Johnson
Software Mentions: 2
Published: over 5 years ago

10.1155/2014/193817

Drug Repositioning Discovery for Early- and Late-Stage Non-Small-Cell Lung Cancer
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Author(s): Chien Hung Huang, Peter Mu Hsin Chang, Yong Lin, Cheng‐Hsu Wang, Chi Ying F. Huang, Ka-Lok Ng
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10.1371/journal.pcbi.1006993

Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations
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Author(s): Carmichael Ong, Thomas Geijtenbeek, Jennifer L. Hicks, Scott L. Delp
Software Mentions: 2
Published: about 5 years ago