Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: ANTs
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ANTs
Animal Network Toolkit Software
5 versions
Latest release: over 2 years ago
304 downloads last month
Papers Mentioning ANTs 393
10.1002/hbm.25161
Longitudinal functional brain network reconfiguration in healthy agingCited by: 27
Author(s): Brigitta Malagurski, Franziskus Liem, Jessica Oschwald, Susan Mérillat, Lutz Jäncke
Software Mentions: 10
Published: about 4 years ago
10.3389/fninf.2019.00061
Recommendations for Processing Head CT DataCited by: 26
Author(s): John Muschelli
Software Mentions: 9
Published: about 5 years ago
10.1016/j.cmpb.2018.01.025
NiftyNet: a deep-learning platform for medical imagingCited by: 429
Author(s): Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert Gray, Tom Doel, Yipeng Hu, T. Whyntie, Parashkev Nachev, Marc Modat, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren
Software Mentions: 9
Published: over 6 years ago
10.1038/s41597-021-00870-6
The Amsterdam Open MRI Collection, a set of multimodal MRI datasets for individual difference analysesCited by: 45
Author(s): Lukas Snoek, Maite M. van der Miesen, Tinka Beemsterboer, Andries van der Leij, Annemarie Eigenhuis, H. Steven Scholte
Software Mentions: 8
Published: over 3 years ago
10.1038/s41597-020-00760-3
Data-science ready, multisite, human diffusion MRI white-matter-tract statisticsCited by: 9
Author(s): Garikoitz Lerma-Usabiaga, Pratik Mukherjee, Mike Perry, Brian A. Wandell
Software Mentions: 7
Published: almost 4 years ago
10.1038/s41597-021-01033-3
The “Narratives” fMRI dataset for evaluating models of naturalistic language comprehensionCited by: 38
Author(s): Samuel A. Nastase, Yun Fei Liu, Hanna Hillman, Asieh Zadbood, Liat Hasenfratz, Neggin Keshavarzian, Janice Chen, Christopher J. Honey, Yehezkel Yeshurun, Mor Regev, Mai Nguyen, Claire H.C. Chang, Christopher Baldassano, Olga Lositsky, Erez Simony, Michael Chow, Yuan Chang Leong, Paula P. Brooks, Emily Micciche, Gina Choe, Ariel Goldstein, Tamara Vanderwal, Yaroslav Halchenko, Kenneth A. Norman, Uri Hasson
Software Mentions: 7
Published: about 3 years ago
10.1038/s41598-020-69265-8
A multilevel statistical toolkit to study animal social networks: the Animal Network Toolkit Software (ANTs) R packageCited by: 18
Author(s): Sebastián Sosa, Ivan Puga-Gonzalez, Fenghe Hu, Jérôme Pansanel, Xiaohua Xie, Cédric Sueur
Software Mentions: 7
Published: over 4 years ago
10.3389/fninf.2020.00024
Sammba-MRI: A Library for Processing SmAll-MaMmal BrAin MRI Data in PythonCited by: 11
Author(s): Marina Célestine, Nachiket A. Nadkarni, Clément M. Garin, Salma Bougacha, Marc Dhénain
Software Mentions: 7
Published: over 4 years ago
10.1016/j.celrep.2019.12.019
Neuroinflammation-Associated Aspecific Manipulation of Mouse Predator Fear by Toxoplasma gondiiCited by: 81
Author(s): Madlaina Boillat, Pierre‐Mehdi Hammoudi, Sunil Kumar Dogga, Stéphane Pagès, Maged Goubran, Iván Rodríguez, Dominique Soldati‐Favre
Software Mentions: 6
Published: almost 5 years ago
10.1038/s41598-021-90335-y
Whole brain functional recordings at cellular resolution in zebrafish larvae with 3D scanning multiphoton microscopyCited by: 15
Author(s): Matteo Bruzzone, Enrico Chiarello, Marco Albanesi, Maria Elena Miletto Petrazzini, Aram Megighian, Claudia Lodovichi, Marco Dal Maschio
Software Mentions: 6
Published: over 3 years ago
10.3389/fninf.2021.689675
Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience StudiesCited by: 47
Author(s): Alexandre Routier, Ninon Burgos, Mauricio Díaz, Michael Bacci, Simona Bottani, Omar El-Rifai, Sabrina Fontanella, Pietro Gori, Jérémy Guillon, A. Guyot, Ravi Hassanaly, Thomas Jacquemont, Pascal Lu, Arnaud Marcoux, T. Moreau, Jorge Samper‐Gonzàlez, Marc Teichmann, Elina Thibeau–Sutre, Ghislain Vaillant, Junhao Wen, Adam Wild, Marie‐Odile Habert, Stanley Durrleman, Olivier Colliot
Software Mentions: 6
Published: about 3 years ago
10.1371/journal.pone.0226501
pyKNEEr: An image analysis workflow for open and reproducible research on femoral knee cartilageCited by: 11
Author(s): Serena Bonaretti, Garry E. Gold, Gary S. Beaupré
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pone.0233645
Freewater estimatoR using iNtErpolated iniTialization (FERNET): Characterizing peritumoral edema using clinically feasible diffusion MRI dataCited by: 24
Author(s): Drew Parker, Abdol Aziz Ould Ismail, Ronald L. Wolf, Steven Brem, Shelton S. Alexander, Wes Hodges, Ofer Pasternak, Emmanuel Caruyer, Ragini Verma
Software Mentions: 6
Published: over 4 years ago
10.1038/s41598-021-87564-6
The ANTsX ecosystem for quantitative biological and medical imagingCited by: 56
Author(s): Nicholas J. Tustison, Philip A. Cook, Andrew J. Holbrook, Hans J. Johnson, John Muschelli, Gabriel A. Devenyi, Jeffrey T. Duda, Sandhitsu R. Das, Nicholas Cullen, Daniel L. Gillen, Michael A. Yassa, James L. Stone, James C. Gee, Brian Avants
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pcbi.1005209
BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methodsCited by: 203
Author(s): Krzysztof J. Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M. Mallar Chakravarty, Nathan W. Churchill, Alexander L. Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Estéban, Guillaume Flandin, Samik Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher J. Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, Russell A. Poldrack
Software Mentions: 5
Published: over 7 years ago
10.18383/j.tom.2016.00172
Dynamic Susceptibility Contrast-MRI Quantification Software Tool: Development and EvaluationCited by: 7
Author(s): Panagiotis Korfiatis, Timothy L. Kline, Zachary S. Kelm, Rickey E. Carter, Leland Hu, Bradley J. Erickson
Software Mentions: 5
Published: almost 8 years ago
10.3389/fonc.2020.622358
Detecting Corticospinal Tract Impairment in Tumor Patients With Fiber Density and Tensor-Based MetricsCited by: 10
Author(s): Lucius S. Fekonja, Ziqian Wang, Dogu Baran Aydogan, Timo Roine, Melina Engelhardt, Felix R. Dreyer, Peter Vajkoczy, Thomas Picht
Software Mentions: 5
Published: almost 4 years ago
10.3389/fninf.2017.00025
Pypes: Workflows for Processing Multimodal Neuroimaging DataCited by: 10
Author(s): Alexandre Savio, Michael Schütte, Manuel Graña, Igor Yakushev
Software Mentions: 5
Published: over 7 years ago
10.1002/hbm.24568
Comparing MRI metrics to quantify white matter microstructural damage in multiple sclerosisCited by: 29
Author(s): Ilona Lipp, Derek K. Jones, Sonya Bells, Eleonora Sgarlata, Catherine Foster, Rachael Stickland, Alison E. Davidson, Emma Tallantyre, Neil Robertson, Richard G. Wise, Valentina Tomassini
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-017-12559-1
The neural representation of personally familiar and unfamiliar faces in the distributed system for face perceptionCited by: 75
Author(s): Matteo Visconti di Oleggio Castello, Yaroslav O. Halchenko, J. Swaroop Guntupalli, Jason Gors, M. Ida Gobbini
Software Mentions: 5
Published: about 7 years ago
10.3389/fnins.2020.00226
Model-Based and Model-Free Analyses of the Neural Correlates of Tongue MovementsCited by: 5
Author(s): Peter Sörös, Sarah Schäfer, Karsten Witt
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0225392
Evidence in support of chromosomal sex influencing plasma based metabolome vs APOE genotype influencing brain metabolome profile in humanized APOE male and female miceCited by: 22
Author(s): Yuan Shang, Aarti Mishra, Tian Wang, Yiwei Wang, Maunil K. Desai, Shuhua Chen, Zisu Mao, Loi Do, Adam Bernstein, Theodore P. Trouard, Roberta Dı́az Brinton
Software Mentions: 4
Published: almost 5 years ago
10.3390/brainsci11091141
Automatic Segmentation of the Olfactory BulbCited by: 4
Author(s): Dmitriy Desser, Francisca Assunção, Yan Xing, Victor Alves, Henrique M. Fernandes, Thomas Hummel
Software Mentions: 4
Published: about 3 years ago
10.1371/journal.pcbi.1008969
Sequence learning recodes cortical representations instead of strengthening initial onesCited by: 0
Author(s): Kristjan Kalm, Dennis Norris
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0250413
Exploring the relationship between maternal prenatal stress and brain structure in premature neonatesCited by: 6
Author(s): Alexandra Lautarescu, Laila Hadaya, Michael C. Craig, Antonis Makropoulos, Dafnis Batallé, Chiara Nosarti, A. David Edwards, Serena Counsell, Suresh Victor
Software Mentions: 4
Published: over 3 years ago
10.7554/eLife.48932
Mapping the human subcortical auditory system using histology, postmortem MRI and in vivo MRI at 7TCited by: 49
Author(s): Kevin Sitek, Omer Faruk Gulban, Evan Calabrese, G. Allan Johnson, Agustín Lage‐Castellanos, Michelle Moerel, Samik Ghosh, Federico De Martino
Software Mentions: 4
Published: over 5 years ago
10.3390/cancers13112568
Radiomic Based Machine Learning Performance for a Three Class Problem in Neuro-Oncology: Time to Test the Waters?Cited by: 10
Author(s): Sarv Priya, Yanan Liu, Caitlin Ward, Nam Le, Neetu Soni, Ravishankar Pillenahalli Maheshwarappa, Varun Monga, Honghai Zhang, Milan Sonka, Girish Bathla
Software Mentions: 4
Published: over 3 years ago
10.1093/braincomms/fcab127
Hippocampal vascularization patterns exert local and distant effects on brain structure but not vascular pathology in old ageCited by: 6
Author(s): Niklas Vockert, Valentina Perosa, Gabriel Ziegler, Frank Schreiber, Anastasia Priester, Marco Spallazzi, Berta Garcia‐Garcia, Merita Aruci, Hendrik Mattern, Aiden Haghikia, Emrah Düzel, Stefanie Schreiber, Anne Maaß
Software Mentions: 4
Published: over 3 years ago
10.3389/fninf.2016.00002
Using Make for Reproducible and Parallel Neuroimaging Workflow and Quality-AssuranceCited by: 19
Author(s): Mary K. Askren, Trevor K. M. Day, Natalie Koh, Zoé Mestre, Jennifer N. Dines, Benjamin Korman, Susan J. Melhorn, Daniel J. Peterson, Matthew Peverill, Xiaoyan Qin, Swati Rane, Melissa Reilly, M. Reiter, Kelly Sambrook, Karl A. Woelfer, Thomas J. Grabowski, Tara M. Madhyastha
Software Mentions: 4
Published: almost 9 years ago
10.1177/1362361320969258
Difference in default mode network subsystems in autism across childhood and adolescenceCited by: 12
Author(s): Joe Bathelt, Hilde M. Geurts
Software Mentions: 4
Published: almost 4 years ago
10.7150/thno.40650
A mouse model of MSU-induced acute inflammation <i>in vivo</i> suggests imiquimod-dependent targeting of <i>Il-1β</i> as relevant therapy for gout patientsCited by: 26
Author(s): Alexandre Mariotte, Aurore De Cauwer, Chrystelle Po, Cherine Abou-Fayçal, Angélique Pichot, Nicodème Paul, Ismael Aouadi, Raphaël Carapito, Benoı̂t Frisch, Cécile Macquin, Emmanuel Chatelus, Jean Sibilia, Jean‐Paul Armspach, Seiamak Bahram, Philippe Georgel
Software Mentions: 4
Published: almost 5 years ago
10.1002/brb3.1941
Physical activity and aerobic fitness in relation to local and interhemispheric functional connectivity in adolescents’ brainsCited by: 5
Author(s): Ilona Ruotsalainen, Enrico Glerean, Juha Karvanen, Tetiana Gorbach, Ville Renvall, Heidi Syväoja, Tuija Tammelin, Tiina Parviainen
Software Mentions: 4
Published: almost 4 years ago
10.1002/hbm.24213
Accurate nonlinear mapping between MNI volumetric and FreeSurfer surface coordinate systemsCited by: 66
Author(s): Jer-Fang Wu, Gia H. Ngo, Douglas N. Greve, J. Li, Tong He, Bruce Fischl, Simon B. Eickhoff, B.T. Thomas Yeo
Software Mentions: 4
Published: over 6 years ago
10.1038/sdata.2018.307
A functional connectome phenotyping dataset including cognitive state and personality measuresCited by: 45
Author(s): Natacha Mendes, Sabine Oligschläger, Mark E. Lauckner, Johannes Golchert, Julia M. Huntenburg, Marcel Falkiewicz, Melissa Ellamil, Sarah Krause, Błażej M. Bączkowski, Roberto Cozatl, Anastasia Osoianu, Deniz Kumral, Jared Pool, Laura Golz, Maria V. Dreyer, Philipp Haueis, Rebecca Jost, Yelyzaveta Kramarenko, Haakon Engen, Katharina Ohrnberger, Krzysztof J. Gorgolewski, Nicolas Farrugia, Anahit Babayan, Andrea Reiter, H. Lina Schaare, Janis Reinelt, Josefin Röbbig, Marie Uhlig, Miray Erbey, Michael Gaebler, Jonathan Smallwood, Arno Villringer, Daniel S. Margulies
Software Mentions: 4
Published: over 5 years ago
10.12688/f1000research.11964.2
Preprocessed Consortium for Neuropsychiatric Phenomics datasetCited by: 25
Author(s): Krzysztof J. Gorgolewski, Joke Durnez, Russell A. Poldrack
Software Mentions: 4
Published: about 7 years ago
10.1093/gigascience/gix013
Science in the cloud (SIC): A use case in MRI connectomicsCited by: 24
Author(s): Gregory Kiar, Krzysztof J. Gorgolewski, Dean Kleissas, William Gray Roncal, Brian Litt, Brian A. Wandell, Russell A. Poldrack, Martin Wiener, R. Jacob Vogelstein, Randal Burns, Joshua T. Vogelstein
Software Mentions: 4
Published: over 7 years ago
10.3389/fninf.2013.00039
Explicit B-spline regularization in diffeomorphic image registrationCited by: 173
Author(s): Nicholas J. Tustison, Brian B. Avants
Software Mentions: 4
Published: almost 12 years ago
10.1002/hbm.24920
Human body odor increases familiarity for faces during encoding‐retrieval taskCited by: 15
Author(s): Cinzia Cecchetto, Florian Ph. S. Fischmeister, Sarah Gorkiewicz, Wolfgang Schuehly, Deepika Bagga, Valentina Parma, Veronika Schöpf
Software Mentions: 4
Published: almost 5 years ago
10.1186/s40478-020-01111-4
Dysfunction in nonsense-mediated decay, protein homeostasis, mitochondrial function, and brain connectivity in ALS-FUS mice with cognitive deficitsCited by: 12
Author(s): Wan Yun Ho, Ira Agrawal, Sheue-Houy Tyan, Emma Sanford, Wei-Tang Chang, Kenneth Teck Kiat Lim, Jolynn Zu Lin Ong, Bernice Siu Yan Tan, Aung Aung Kywe Moe, Regina Yu, Peiyan Wong, Greg Tucker‐Kellogg, Edward H. Koo, Kai‐Hsiang Chuang, Shuo-Chien Ling
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0184661
MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sitesCited by: 508
Author(s): Oscar Estéban, Daniel Birman, Marie Schaer, Oluwasanmi Koyejo, Russell A. Poldrack, Krzysztof J. Gorgolewski
Software Mentions: 4
Published: about 7 years ago
10.1126/sciadv.abg1512
Dopaminergic organization of striatum is linked to cortical activity and brain expression of genes associated with psychiatric illnessCited by: 9
Author(s): Robert McCutcheon, Kirsten Brown, Matthew M. Nour, Stephen M. Smith, Mattia Veronese, Fernando Zelaya, Martin Osugo, Sameer Jauhar, William A. Hallett, Mitul Mehta, Oliver Howes
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0236495
An unbiased template of the Drosophila brain and ventral nerve cordCited by: 57
Author(s): John A. Bogovic, Hideo Otsuna, Larissa Heinrich, Masayoshi Ito, Jennifer Jeter, Geoffrey W. Meissner, Aljoscha Nern, Jennifer Colonell, Oz Malkesman, Kei Ito, Stephan Saalfeld
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-83135-x
Audiovisual structural connectivity in musicians and non-musicians: a cortical thickness and diffusion tensor imaging studyCited by: 9
Author(s): Cecilie Møller, Eduardo A. Garza-Villarreal, Niels Chr. Hansen, Andreas Højlund, Klaus B. Bærentsen, M. Mallar Chakravarty, Peter Vuust
Software Mentions: 3
Published: over 3 years ago
10.3389/fnins.2018.00573
Detection and Distinction of Mild Brain Injury Effects in a Ferret Model Using Diffusion Tensor MRI (DTI) and DTI-Driven Tensor-Based Morphometry (D-TBM)Cited by: 15
Author(s): Elizabeth Hutchinson, Susan C. Schwerin, Kryslaine L. Radomski, Neda Sadeghi, Michal E. Komlosh, M. Okan İrfanoğlu, Sharon L. Juliano, Carlo Pierpaoli
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0136718
Accelerating Neuroimage Registration through Parallel Computation of Similarity MetricCited by: 6
Author(s): Yungang Luo, Ping Liu, Lin Shi, Yishan Luo, Lei Yi, Ang Li, Jing Qin, Pheng‐Ann Heng, Defeng Wang
Software Mentions: 3
Published: about 9 years ago
10.1002/acn3.51183
Tau pathology associates with in vivo cortical thinning in Lewy body disordersCited by: 17
Author(s): Nicola Spotorno, David G. Coughlin, Christopher Olm, David A. Wolk, Sanjeev Vaishnavi, Leslie M. Shaw, Nabila Dahodwala, James F. Morley, John E. Duda, Andres Deik, Meredith Spindler, Alice S. Chen‐Plotkin, Edward B. Lee, John Q. Trojanowski, Corey T. McMillan, Daniel Weintraub, Murray Grossman, David J. Irwin
Software Mentions: 3
Published: about 4 years ago
10.3390/tomography7010003
Systematic Assessment of the Impact of DTI Methodology on Fractional Anisotropy Measures in Alzheimer’s DiseaseCited by: 6
Author(s): Maurizio Bergamino, Elizabeth Keeling, Ryan R. Walsh, Ashley M. Stokes
Software Mentions: 3
Published: over 3 years ago
10.3389/fninf.2014.00067
Pydpiper: a flexible toolkit for constructing novel registration pipelinesCited by: 70
Author(s): Miriam Friedel, Matthijs C. van Eede, Jon Pipitone, M. Mallar Chakravarty, Jason P. Lerch
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0250504
Sub-millimetre resolution laminar fMRI using Arterial Spin Labelling in humans at 7 TCited by: 23
Author(s): Sriranga Kashyap, Dimo Ivanov, Martin Havlíček, Laurentius Huber, Benedikt A. Poser, Kâmil Uludağ
Software Mentions: 3
Published: over 3 years ago
10.7554/eLife.34354
Macro-connectomics and microstructure predict dynamic plasticity patterns in the non-human primate brainCited by: 22
Author(s): Seán Froudist-Walsh, Philip J. Browning, James J. Young, Kathy Murphy, Rogier B. Mars, Lazar Fleysher, Paula L. Croxson
Software Mentions: 3
Published: almost 6 years ago
10.3389/fneur.2020.595463
Pathomechanisms of HIV-Associated Cerebral Small Vessel Disease: A Comprehensive Clinical and Neuroimaging Protocol and Analysis PipelineCited by: 7
Author(s): Kyle D. Murray, Meera V. Singh, Yuchuan Zhuang, Nasir Uddin, Xing Qiu, Miriam Weber, Madalina E. Tivarus, Henry Z. Wang, Bogachan Sahin, Jianhui Zhong, Sanjay B. Maggirwar, Giovanni Schifitto
Software Mentions: 3
Published: almost 4 years ago
10.3389/fnins.2019.00972
Brainglance: Visualizing Group Level MRI Data at One GlanceCited by: 4
Author(s): Johannes Stelzer, Eric Lacosse, J Bause, Klaus Scheffler, Gabriele Lohmann
Software Mentions: 3
Published: about 5 years ago
10.3389/fnins.2019.01286
Neural Representation of Parental Monitoring and Links to Adolescent Risk TakingCited by: 4
Author(s): Tae Ho Lee, Yang Qu, Eva H. Telzer
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0204071
Deep learning-based quantification of abdominal fat on magnetic resonance imagesCited by: 10
Author(s): Andrew T. Grainger, Nicholas J. Tustison, Kun Qing, R. Jack Roy, Stuart S. Berr, Weibin Shi
Software Mentions: 3
Published: about 6 years ago
10.3389/fneur.2021.625431
Daily Morning Blue Light Therapy for Post-mTBI Sleep Disruption: Effects on Brain Structure and FunctionCited by: 9
Author(s): Adam C. Raikes, Natalie S. Dailey, Brittany Forbeck, Anna Alkozei, William D.S. Killgore
Software Mentions: 3
Published: over 3 years ago
10.3389/fneur.2020.00244
Brain Morphometry Estimation: From Hours to Seconds Using Deep LearningCited by: 16
Author(s): Michael Rebsamen, Yannick Suter, Roland Wiest, Mauricio Reyes, Christian Rummel
Software Mentions: 3
Published: over 4 years ago
10.7554/eLife.63551
Temporo-parietal cortex involved in modeling one’s own and others’ attentionCited by: 10
Author(s): Arvid Guterstam, Branden J. Bio, Andrew I. Wilterson, Michael S. A. Graziano
Software Mentions: 3
Published: over 3 years ago
10.3389/fninf.2014.00044
The Insight ToolKit image registration frameworkCited by: 404
Author(s): Brian B. Avants, Nicholas J. Tustison, Michael Stauffer, Gang Song, Bangyu Wu, James C. Gee
Software Mentions: 3
Published: over 10 years ago
10.7554/eLife.44837
Modulation of tonotopic ventral medial geniculate body is behaviorally relevant for speech recognitionCited by: 24
Author(s): Paul Glad Mihai, Michelle Moerel, Federico De Martino, Robert Trampel, Stefan J. Kiebel, Katharina von Kriegstein
Software Mentions: 3
Published: about 5 years ago
10.1038/s41398-018-0229-0
Genetic risk for schizophrenia and autism, social impairment and developmental pathways to psychosisCited by: 15
Author(s): Eva Velthorst, Seán Froudist-Walsh, Eli A. Stahl, Douglas M. Ruderfer, Iliyan Ivanov, Joseph D. Buxbaum, Tobias Banaschewski, Arun L.W. Bokde, Dipl-Psych Ub, Christian Büchel, Quinlan Eb, Sylvane Desrivières, Herta Flor, Frouin, Hugh Garavan, Penny Gowland, Andreas Heinz, Bernd Ittermann, Martinot Mp, Éric Artiges, Frauke Nees, Orfanos Dp, Thomas Paus, Luise Poustka, Sarah Hohmann, JH Fröhner, MN Smolka, Henrik Walter, Robert Whelan, Günter Schumann, Avi Reichenberg
Software Mentions: 3
Published: about 6 years ago
10.1186/s12916-021-01962-1
Functional connectivity changes in cerebral small vessel disease - a systematic review of the resting-state MRI literatureCited by: 22
Author(s): Maximilian Schulz, Caroline Malherbe, Bastian Cheng, Götz Thomalla, Eckhard Schlemm
Software Mentions: 3
Published: over 3 years ago
10.7554/eLife.48114
Pretectal neurons control hunting behaviourCited by: 39
Author(s): Paride Antinucci, Mónica Folgueira, Isaac H. Bianco
Software Mentions: 3
Published: about 5 years ago
10.7554/eLife.55300
Temporal selectivity declines in the aging human auditory cortexCited by: 19
Author(s): Julia Erb, Lea‐Maria Schmitt, Jonas Obleser
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-021-90032-w
Machine learning based differentiation of glioblastoma from brain metastasis using MRI derived radiomicsCited by: 23
Author(s): Sarv Priya, Yanan Liu, Caitlin Ward, Nam Le, Neetu Soni, Ravishankar Pillenahalli Maheshwarappa, Varun Monga, Honghai Zhang, Milan Sonka, Girish Bathla
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-020-78284-4
Optimization and validation of diffusion MRI-based fiber tracking with neural tracer data as a referenceCited by: 13
Author(s): Carlos Enrique Gutierrez, Henrik Skibbe, Ken Nakae, Hiromichi Tsukada, Jean‐Sylvain Liénard, Akiya Watakabe, Junichi Hata, Marco Reisert, Alexander Woodward, Yoko Yamaguchi, Tetsuo Yamamori, Hideyuki Okano, Shin Ishii, Kenji Doya
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-020-71662-y
Choosing to view morbid information involves reward circuitryCited by: 20
Author(s): Suzanne Oosterwijk, Lukas Snoek, Jurriaan Tekoppele, Lara H. Engelbert, H. Steven Scholte
Software Mentions: 3
Published: about 4 years ago
10.2196/24356
Application of an Adaptive, Digital, Game-Based Approach for Cognitive Assessment in Multiple Sclerosis: Observational StudyCited by: 10
Author(s): Wan-Yu Hsu, William Rowles, Joaquin A. Anguera, Chao Zhao, Annika Anderson, Amber Alexander, Simone Sacco, Roland G. Henry, Adam Gazzaley, Riley Bove
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-019-53144-y
Temporal stability of fMRI in medetomidine-anesthetized ratsCited by: 28
Author(s): Nikoloz Sirmpilatze, Jürgen Baudewig, Susann Boretius
Software Mentions: 3
Published: almost 5 years ago
10.3389/fnagi.2020.00238
Classification and Graphical Analysis of Alzheimer’s Disease and Its Prodromal Stage Using Multimodal Features From Structural, Diffusion, and Functional Neuroimaging Data and the APOE GenotypeCited by: 23
Author(s): Yubraj Gupta, Ji‐In Kim, Byeong C. Kim, Goo‐Rak Kwon
Software Mentions: 3
Published: over 4 years ago
10.1002/hbm.25036
Dynamic functional connectivity between nucleus accumbens and the central executive network relates to chronic cannabis useCited by: 8
Author(s): Hye Bin Yoo, Blake Edward Moya, Francesca M. Filbey
Software Mentions: 3
Published: over 4 years ago
10.1038/sdata.2018.308
A mind-brain-body dataset of MRI, EEG, cognition, emotion, and peripheral physiology in young and old adultsCited by: 160
Author(s): Anahit Babayan, Miray Erbey, Deniz Kumral, Janis Reinelt, Andrea Reiter, Josefin Röbbig, H. Lina Schaare, Marie Uhlig, Alfred Anwander, Pierre‐Louis Bazin, Annette Horstmann, Leonie Lampe, Vadim V. Nikulin, Hadas Okon‐Singer, Sven Preusser, André Pampel, Christiane S. Rohr, Julia Sacher, Angelika Thöne-Otto, Sabrina Trapp, Till Nierhaus, Denise Altmann, Katrin Arélin, Maria Blöchl, Edith Bongartz, Patric Breig, Elena Cesnaite, Sufang Chen, Roberto Cozatl, Saskia Czerwonatis, Gabriele Dambrauskaite, Maria V. Dreyer, Jessica Enders, Melina Engelhardt, M. Fischer, Norman Forschack, Johannes Golchert, Laura Golz, Catherine-Noémie Alexandrina Guran, Susanna Hedrich, Nicole Hentschel, D. Hoffmann, Julia M. Huntenburg, Rebecca Jost, Anna Kosatschek, Stella Kunzendorf, H. Bruce Lammers, Mark E. Lauckner, Keyvan Mahjoory, Ahmad S. Kanaan, Natacha Mendes, Ramona Menger, Enzo Morino, Karina Näthe, Jennifer Neubauer, Handan Noyan, Sabine Oligschläger, Patricia Panczyszyn-Trzewik, Dorothee Poehlchen, Nadine Putzke, Sabrina Roski, Marie-Catherine Schaller, Anja Schieferbein, Benito Schlaak, Robert Schmidt, Krzysztof J. Gorgolewski, Hanna Maria Schmidt, Anne Schrimpf, Sylvia Stasch, Maria Voß, Annett Wiedemann, Daniel S. Margulies, Michael Gaebler, Arno Villringer
Software Mentions: 3
Published: over 5 years ago
10.1002/hbm.25159
Direct cortical thickness estimation using deep learning‐based anatomy segmentation and cortex parcellationCited by: 32
Author(s): Michael Rebsamen, Christian Rummel, Mauricio Reyes, Roland Wiest, Richard McKinley
Software Mentions: 3
Published: about 4 years ago
10.1002/hbm.25474
Improved normalization of lesioned brains via cohort‐specific templatesCited by: 5
Author(s): Ioannis Pappas, Henrik Hector, Kari A. Haws, Brian Curran, Andrew S. Kayser, Mark D’Esposito
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0186071
Discrete pre-processing step effects in registration-based pipelines, a preliminary volumetric study on T1-weighted imagesCited by: 5
Author(s): Nathan M. Muncy, Ariana Hedges‐Muncy, C. Brock Kirwan
Software Mentions: 3
Published: about 7 years ago
10.1002/hbm.25147
Spatially coherent and topographically organized pathways of the human globus pallidusCited by: 24
Author(s): Salvatore Bertino, Gianpaolo Antonio Basile, Alessia Bramanti, Giuseppe Anastasi, Angelo Quartarone, Demetrio Milardi, Alberto Cacciola
Software Mentions: 3
Published: over 4 years ago
10.3390/diagnostics10110930
Cognitive Fatigue Is Associated with Altered Functional Connectivity in Interoceptive and Reward Pathways in Multiple SclerosisCited by: 19
Author(s): Michelle H. Chen, John DeLuca, Helen M. Genova, Bing Yao, Glenn R. Wylie
Software Mentions: 3
Published: almost 4 years ago
10.3389/fnagi.2019.00115
Deep Learning and Multiplex Networks for Accurate Modeling of Brain AgeCited by: 36
Author(s): Nicola Amoroso, Marianna La Rocca, Loredana Bellantuono, Domenico Diacono, Annarita Fanizzi, Eufemia Lella, Angela Lombardi, T. Maggipinto, Sabina Tangaro, R. Bellotti
Software Mentions: 3
Published: over 5 years ago
10.1016/j.dib.2019.104399
Histological and diffusion-weighted magnetic resonance imaging data from normal and degenerated optic nerve and chiasm of the ratCited by: 1
Author(s): Omar Narvaez-Delgado, Gilberto Rojas-Vite, Ricardo Coronado-Leija, Alonso Ramírez-Manzanares, José L. Marroquín, Ramsés Noguez-Imm, Marcos Luis Aranda, Benoît Scherrer, Jorge Larriva-Sahd, Luis Concha
Software Mentions: 3
Published: about 5 years ago
10.1111/desc.12579
Differences in brain morphology and working memory capacity across childhoodCited by: 37
Author(s): Joe Bathelt, Susan E. Gathercole, Amy Johnson, Duncan E. Astle
Software Mentions: 3
Published: over 7 years ago
10.1186/s13742-015-0045-x
Connectomics and new approaches for analyzing human brain functional connectivityCited by: 55
Author(s): R. Cameron Craddock, Rosalia L. Tungaraza, Michael P. Milham
Software Mentions: 3
Published: over 9 years ago
10.1038/s41598-020-71535-4
Sylvian fissure development is linked to differential genetic expression in the pre-folded brainCited by: 10
Author(s): Arka N. Mallela, Hansen Deng, Alyssa K. Brisbin, Alan Bush, Ezequiel Goldschmidt
Software Mentions: 3
Published: about 4 years ago
10.1523/ENEURO.0018-20.2020
Orienting Attention to Short-Term Memory Representations via Sensory Modality and Semantic Category Retro-CuesCited by: 2
Author(s): Kristina C. Backer, Bradley R. Buchsbaum, Claude Alain
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0196381
The neuroanatomy of speech sequencing at the syllable levelCited by: 22
Author(s): Feng Rong, A. Lisette Isenberg, Erica Sun, Gregory Hickok
Software Mentions: 2
Published: about 6 years ago
10.1007/s00429-017-1556-2
Hippocampal–caudate nucleus interactions support exceptional memory performanceCited by: 17
Author(s): N. Müller, Boris N. Konrad, Nils Kohn, Mayra López, Michael Czisch, Guillén Fernández, Martin Dresler
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0237204
Adults vs. neonates: Differentiation of functional connectivity between the basolateral amygdala and occipitotemporal cortexCited by: 5
Author(s): Heather A. Hansen, Jin Li, Zeynep M. Saygin
Software Mentions: 2
Published: about 4 years ago
10.3389/fnins.2013.00162
Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciencesCited by: 32
Author(s): Nicholas J. Tustison, Hans J. Johnson, Torsten Rohlfing, Arno Klein, Samik Ghosh, Luis Ibáñez, Brian B. Avants
Software Mentions: 2
Published: almost 12 years ago
10.3389/fnins.2019.00169
Robust Motion Regression of Resting-State Data Using a Convolutional Neural Network ModelCited by: 13
Author(s): Zhiguo Yang, Xiaowei Zhuang, Karthik Sreenivasan, Virendra Mishra, Dietmar Cordes, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 2
Published: over 5 years ago
10.3389/fnins.2021.663403
Energy-Period Profiles of Brain Networks in Group fMRI Resting-State Data: A Comparison of Empirical Mode Decomposition With the Short-Time Fourier Transform and the Discrete Wavelet TransformCited by: 9
Author(s): Dietmar Cordes, Muhammad Kaleem, Zhiguo Yang, Xiaowei Zhuang, Tim Curran, Karthik Sreenivasan, Virendra Mishra, Rajesh Nandy, Ryan R. Walsh
Software Mentions: 2
Published: over 3 years ago
10.3389/fnins.2018.00528
On the Extraction and Analysis of Graphs From Resting-State fMRI to Support a Correct and Robust Diagnostic Tool for Alzheimer's DiseaseCited by: 4
Author(s): Claudia Bachmann, Heidi I.L. Jacobs, PierGianLuca Porta Mana, Kim Dillen, Nils Richter, Boris von Reutern, Julian Dronse, Oezguer A. Onur, Karl‐Josef Langen, Gereon R. Fink, Juraj Kukolja, Abigail Morrison
Software Mentions: 2
Published: about 6 years ago
10.3389/fnins.2018.00064
Inter-subject Registration of Functional Images: Do We Need Anatomical Images?Cited by: 32
Author(s): Elvis Dohmatob, Gaël Varoquaux, Bertrand Thirion
Software Mentions: 2
Published: over 6 years ago
10.3389/fneur.2017.00519
Recommendations for the Use of Automated Gray Matter Segmentation Tools: Evidence from Huntington’s DiseaseCited by: 31
Author(s): Eileanoir B. Johnson, Sarah Gregory, Hans J. Johnson, Alexandra Dürr, Blair R. Leavitt, Raymund A.C. Roos, Geraint Rees, Sarah J. Tabrizi, Rachael I. Scahill
Software Mentions: 2
Published: about 7 years ago
10.3389/fnins.2021.634063
Advanced Analysis of Diffusion Tensor Imaging Along With Machine Learning Provides New Sensitive Measures of Tissue Pathology and Intra-Lesion Activity in Multiple SclerosisCited by: 7
Author(s): Olayinka Oladosu, Weiqiao Liu, Bruce Pike, Marcus Koch, Luanne M. Metz, Yunyan Zhang
Software Mentions: 2
Published: over 3 years ago
10.3389/fnins.2020.00845
Neuroprotective Effects of Casein-Derived Peptide Met-Lys-Pro (MKP) in a Hypertensive ModelCited by: 5
Author(s): Asuka Tada, Hamizah Shahirah Hamezah, Daijiro Yanagisawa, Shigehiro Morikawa, Ikuo Tooyama
Software Mentions: 2
Published: about 4 years ago
10.1007/s11682-020-00319-1
Measuring decline in white matter integrity after systemic treatment for breast cancer: omitting skeletonization enhances sensitivityCited by: 15
Author(s): Yasmin Mzayek, Michiel B. de Ruiter, Hester S. A. Oldenburg, Liesbeth Reneman, Sanne B. Schagen
Software Mentions: 2
Published: over 4 years ago
10.3389/fneur.2020.00153
Combined Diffusion Tensor Imaging and Quantitative Susceptibility Mapping Discern Discrete Facets of White Matter Pathology Post-injury in the Rodent BrainCited by: 14
Author(s): Neha Soni, Viktor Vegh, Xuan Vinh To, Abdalla Z. Mohamed, Karin Borges, Fatima A. Nasrallah
Software Mentions: 2
Published: over 4 years ago
10.1038/s42003-019-0611-3
An improved neuroanatomical model of the default-mode network reconciles previous neuroimaging and neuropathological findingsCited by: 197
Author(s): Pedro Nascimento Alves, Chris Foulon, Vyacheslav Karolis, Danilo Bzdok, Daniel S. Margulies, Emmanuelle Volle
Software Mentions: 2
Published: about 5 years ago
10.1002/acn3.51421
Effects of simvastatin on white matter integrity in healthy middle‐aged adultsCited by: 6
Author(s): N. Vogt, Jack F.V. Hunt, Yue Ma, Carol A. Van Hulle, Nagesh Adluru, Richard J. Chappell, Karen K. Lazar, Laura Jacobson, Benjamin P. Austin, Sanjay Asthana, Sterling C. Johnson, Barbara B. Bendlin, Cynthia M. Carlsson
Software Mentions: 2
Published: over 3 years ago
10.3389/fneur.2020.00381
The Effect of Scan Length on the Assessment of BOLD Delay in Ischemic StrokeCited by: 7
Author(s): Ayse Ceren Tanrıtanır, Kersten Villringer, Ivana Galinović, Ulrike Grittner, Evgeniya Kirilina, Jochen B. Fiebach, Arno Villringer, Ahmed A. Khalil
Software Mentions: 2
Published: over 4 years ago
10.3389/fnins.2015.00061
Segmentation of brain magnetic resonance images based on multi-atlas likelihood fusion: testing using data with a broad range of anatomical and photometric profilesCited by: 47
Author(s): Xiaoying Tang, Deana Crocetti, Kwame S. Kutten, Can Ceritoglu, Marilyn Albert, Susumu Mori, Stewart H. Mostofsky, Michael I. Miller
Software Mentions: 2
Published: over 9 years ago
10.3389/fninf.2020.00014
MonkeyCBP: A Toolbox for Connectivity-Based Parcellation of Monkey BrainCited by: 4
Author(s): Bin He, Zhengyi Yang, Lingzhong Fan, Bin Gao, Hai Li, Chuyang Ye, Bo You, Tianzi Jiang
Software Mentions: 2
Published: over 4 years ago