cran: ANTs | Projects | Ecosyste.ms: Papers

10.1002/hbm.25161

Longitudinal functional brain network reconfiguration in healthy aging
Cited by: 27
Author(s): Brigitta Malagurski, Franziskus Liem, Jessica Oschwald, Susan Mérillat, Lutz Jäncke
Software Mentions: 10
Published: over 3 years ago

10.3389/fninf.2019.00061

Recommendations for Processing Head CT Data
Cited by: 26
Author(s): John Muschelli
Software Mentions: 9
Published: over 4 years ago

10.1016/j.cmpb.2018.01.025

NiftyNet: a deep-learning platform for medical imaging
Cited by: 429
Author(s): Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert Gray, Tom Doel, Yipeng Hu, T. Whyntie, Parashkev Nachev, Marc Modat, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren
Software Mentions: 9
Published: about 6 years ago

10.1038/s41597-021-00870-6

The Amsterdam Open MRI Collection, a set of multimodal MRI datasets for individual difference analyses
Cited by: 45
Author(s): Lukas Snoek, Maite M. van der Miesen, Tinka Beemsterboer, Andries van der Leij, Annemarie Eigenhuis, H. Steven Scholte
Software Mentions: 8
Published: about 3 years ago

10.1038/s41597-020-00760-3

Data-science ready, multisite, human diffusion MRI white-matter-tract statistics
Cited by: 9
Author(s): Garikoitz Lerma-Usabiaga, Pratik Mukherjee, Mike Perry, Brian A. Wandell
Software Mentions: 7
Published: over 3 years ago

10.1038/s41597-021-01033-3

The “Narratives” fMRI dataset for evaluating models of naturalistic language comprehension
Cited by: 38
Author(s): Samuel A. Nastase, Yun Fei Liu, Hanna Hillman, Asieh Zadbood, Liat Hasenfratz, Neggin Keshavarzian, Janice Chen, Christopher J. Honey, Yehezkel Yeshurun, Mor Regev, Mai Nguyen, Claire H.C. Chang, Christopher Baldassano, Olga Lositsky, Erez Simony, Michael Chow, Yuan Chang Leong, Paula P. Brooks, Emily Micciche, Gina Choe, Ariel Goldstein, Tamara Vanderwal, Yaroslav Halchenko, Kenneth A. Norman, Uri Hasson
Software Mentions: 7
Published: over 2 years ago

10.1038/s41598-020-69265-8

A multilevel statistical toolkit to study animal social networks: the Animal Network Toolkit Software (ANTs) R package
Cited by: 18
Author(s): Sebastián Sosa, Ivan Puga-Gonzalez, Fenghe Hu, Jérôme Pansanel, Xiaohua Xie, Cédric Sueur
Software Mentions: 7
Published: almost 4 years ago

10.3389/fninf.2020.00024

Sammba-MRI: A Library for Processing SmAll-MaMmal BrAin MRI Data in Python
Cited by: 11
Author(s): Marina Célestine, Nachiket A. Nadkarni, Clément M. Garin, Salma Bougacha, Marc Dhénain
Software Mentions: 7
Published: almost 4 years ago

10.1016/j.celrep.2019.12.019

Neuroinflammation-Associated Aspecific Manipulation of Mouse Predator Fear by Toxoplasma gondii
Cited by: 81
Author(s): Madlaina Boillat, Pierre‐Mehdi Hammoudi, Sunil Kumar Dogga, Stéphane Pagès, Maged Goubran, Iván Rodríguez, Dominique Soldati‐Favre
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-90335-y

Whole brain functional recordings at cellular resolution in zebrafish larvae with 3D scanning multiphoton microscopy
Cited by: 15
Author(s): Matteo Bruzzone, Enrico Chiarello, Marco Albanesi, Maria Elena Miletto Petrazzini, Aram Megighian, Claudia Lodovichi, Marco Dal Maschio
Software Mentions: 6
Published: almost 3 years ago

10.3389/fninf.2021.689675

Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies
Cited by: 47
Author(s): Alexandre Routier, Ninon Burgos, Mauricio Díaz, Michael Bacci, Simona Bottani, Omar El-Rifai, Sabrina Fontanella, Pietro Gori, Jérémy Guillon, A. Guyot, Ravi Hassanaly, Thomas Jacquemont, Pascal Lu, Arnaud Marcoux, T. Moreau, Jorge Samper‐Gonzàlez, Marc Teichmann, Elina Thibeau–Sutre, Ghislain Vaillant, Junhao Wen, Adam Wild, Marie‐Odile Habert, Stanley Durrleman, Olivier Colliot
Software Mentions: 6
Published: almost 3 years ago

10.1371/journal.pone.0226501

pyKNEEr: An image analysis workflow for open and reproducible research on femoral knee cartilage
Cited by: 11
Author(s): Serena Bonaretti, Garry E. Gold, Gary S. Beaupré
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0233645

Freewater estimatoR using iNtErpolated iniTialization (FERNET): Characterizing peritumoral edema using clinically feasible diffusion MRI data
Cited by: 24
Author(s): Drew Parker, Abdol Aziz Ould Ismail, Ronald L. Wolf, Steven Brem, Shelton S. Alexander, Wes Hodges, Ofer Pasternak, Emmanuel Caruyer, Ragini Verma
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-021-87564-6

The ANTsX ecosystem for quantitative biological and medical imaging
Cited by: 56
Author(s): Nicholas J. Tustison, Philip A. Cook, Andrew J. Holbrook, Hans J. Johnson, John Muschelli, Gabriel A. Devenyi, Jeffrey T. Duda, Sandhitsu R. Das, Nicholas Cullen, Daniel L. Gillen, Michael A. Yassa, James L. Stone, James C. Gee, Brian Avants
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pcbi.1005209

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods
Cited by: 203
Author(s): Krzysztof J. Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M. Mallar Chakravarty, Nathan W. Churchill, Alexander L. Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Estéban, Guillaume Flandin, Samik Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher J. Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, Russell A. Poldrack
Software Mentions: 5
Published: about 7 years ago

10.18383/j.tom.2016.00172

Dynamic Susceptibility Contrast-MRI Quantification Software Tool: Development and Evaluation
Cited by: 7
Author(s): Panagiotis Korfiatis, Timothy L. Kline, Zachary S. Kelm, Rickey E. Carter, Leland Hu, Bradley J. Erickson
Software Mentions: 5
Published: over 7 years ago

10.3389/fonc.2020.622358

Detecting Corticospinal Tract Impairment in Tumor Patients With Fiber Density and Tensor-Based Metrics
Cited by: 10
Author(s): Lucius S. Fekonja, Ziqian Wang, Dogu Baran Aydogan, Timo Roine, Melina Engelhardt, Felix R. Dreyer, Peter Vajkoczy, Thomas Picht
Software Mentions: 5
Published: over 3 years ago

10.3389/fninf.2017.00025

Pypes: Workflows for Processing Multimodal Neuroimaging Data
Cited by: 10
Author(s): Alexandre Savio, Michael Schütte, Manuel Graña, Igor Yakushev
Software Mentions: 5
Published: about 7 years ago

10.1002/hbm.24568

Comparing MRI metrics to quantify white matter microstructural damage in multiple sclerosis
Cited by: 29
Author(s): Ilona Lipp, Derek K. Jones, Sonya Bells, Eleonora Sgarlata, Catherine Foster, Rachael Stickland, Alison E. Davidson, Emma Tallantyre, Neil Robertson, Richard G. Wise, Valentina Tomassini
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-017-12559-1

The neural representation of personally familiar and unfamiliar faces in the distributed system for face perception
Cited by: 75
Author(s): Matteo Visconti di Oleggio Castello, Yaroslav O. Halchenko, J. Swaroop Guntupalli, Jason Gors, M. Ida Gobbini
Software Mentions: 5
Published: over 6 years ago

10.3389/fnins.2020.00226

Model-Based and Model-Free Analyses of the Neural Correlates of Tongue Movements
Cited by: 5
Author(s): Peter Sörös, Sarah Schäfer, Karsten Witt
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0225392

Evidence in support of chromosomal sex influencing plasma based metabolome vs APOE genotype influencing brain metabolome profile in humanized APOE male and female mice
Cited by: 22
Author(s): Yuan Shang, Aarti Mishra, Tian Wang, Yiwei Wang, Maunil K. Desai, Shuhua Chen, Zisu Mao, Loi Do, Adam Bernstein, Theodore P. Trouard, Roberta Dı́az Brinton
Software Mentions: 4
Published: over 4 years ago

10.3390/brainsci11091141

Automatic Segmentation of the Olfactory Bulb
Cited by: 4
Author(s): Dmitriy Desser, Francisca Assunção, Yan Xing, Victor Alves, Henrique M. Fernandes, Thomas Hummel
Software Mentions: 4
Published: over 2 years ago

10.1371/journal.pcbi.1008969

Sequence learning recodes cortical representations instead of strengthening initial ones
Cited by: 0
Author(s): Kristjan Kalm, Dennis Norris
Software Mentions: 4
Published: almost 3 years ago

10.1371/journal.pone.0250413

Exploring the relationship between maternal prenatal stress and brain structure in premature neonates
Cited by: 6
Author(s): Alexandra Lautarescu, Laila Hadaya, Michael C. Craig, Antonis Makropoulos, Dafnis Batallé, Chiara Nosarti, A. David Edwards, Serena Counsell, Suresh Victor
Software Mentions: 4
Published: about 3 years ago

10.7554/eLife.48932

Mapping the human subcortical auditory system using histology, postmortem MRI and in vivo MRI at 7T
Cited by: 49
Author(s): Kevin Sitek, Omer Faruk Gulban, Evan Calabrese, G. Allan Johnson, Agustín Lage‐Castellanos, Michelle Moerel, Samik Ghosh, Federico De Martino
Software Mentions: 4
Published: almost 5 years ago

10.3390/cancers13112568

Radiomic Based Machine Learning Performance for a Three Class Problem in Neuro-Oncology: Time to Test the Waters?
Cited by: 10
Author(s): Sarv Priya, Yanan Liu, Caitlin Ward, Nam Le, Neetu Soni, Ravishankar Pillenahalli Maheshwarappa, Varun Monga, Honghai Zhang, Milan Sonka, Girish Bathla
Software Mentions: 4
Published: almost 3 years ago

10.1093/braincomms/fcab127

Hippocampal vascularization patterns exert local and distant effects on brain structure but not vascular pathology in old age
Cited by: 6
Author(s): Niklas Vockert, Valentina Perosa, Gabriel Ziegler, Frank Schreiber, Anastasia Priester, Marco Spallazzi, Berta Garcia‐Garcia, Merita Aruci, Hendrik Mattern, Aiden Haghikia, Emrah Düzel, Stefanie Schreiber, Anne Maaß
Software Mentions: 4
Published: almost 3 years ago

10.3389/fninf.2016.00002

Using Make for Reproducible and Parallel Neuroimaging Workflow and Quality-Assurance
Cited by: 19
Author(s): Mary K. Askren, Trevor K. M. Day, Natalie Koh, Zoé Mestre, Jennifer N. Dines, Benjamin Korman, Susan J. Melhorn, Daniel J. Peterson, Matthew Peverill, Xiaoyan Qin, Swati Rane, Melissa Reilly, M. Reiter, Kelly Sambrook, Karl A. Woelfer, Thomas J. Grabowski, Tara M. Madhyastha
Software Mentions: 4
Published: over 8 years ago

10.1177/1362361320969258

Difference in default mode network subsystems in autism across childhood and adolescence
Cited by: 12
Author(s): Joe Bathelt, Hilde M. Geurts
Software Mentions: 4
Published: over 3 years ago

10.7150/thno.40650

A mouse model of MSU-induced acute inflammation <i>in vivo</i> suggests imiquimod-dependent targeting of <i>Il-1β</i> as relevant therapy for gout patients
Cited by: 26
Author(s): Alexandre Mariotte, Aurore De Cauwer, Chrystelle Po, Cherine Abou-Fayçal, Angélique Pichot, Nicodème Paul, Ismael Aouadi, Raphaël Carapito, Benoı̂t Frisch, Cécile Macquin, Emmanuel Chatelus, Jean Sibilia, Jean‐Paul Armspach, Seiamak Bahram, Philippe Georgel
Software Mentions: 4
Published: over 4 years ago

10.1002/brb3.1941

Physical activity and aerobic fitness in relation to local and interhemispheric functional connectivity in adolescents’ brains
Cited by: 5
Author(s): Ilona Ruotsalainen, Enrico Glerean, Juha Karvanen, Tetiana Gorbach, Ville Renvall, Heidi Syväoja, Tuija Tammelin, Tiina Parviainen
Software Mentions: 4
Published: over 3 years ago

10.1002/hbm.24213

Accurate nonlinear mapping between MNI volumetric and FreeSurfer surface coordinate systems
Cited by: 66
Author(s): Jer-Fang Wu, Gia H. Ngo, Douglas N. Greve, J. Li, Tong He, Bruce Fischl, Simon B. Eickhoff, B.T. Thomas Yeo
Software Mentions: 4
Published: about 6 years ago

10.1038/sdata.2018.307

A functional connectome phenotyping dataset including cognitive state and personality measures
Cited by: 45
Author(s): Natacha Mendes, Sabine Oligschläger, Mark E. Lauckner, Johannes Golchert, Julia M. Huntenburg, Marcel Falkiewicz, Melissa Ellamil, Sarah Krause, Błażej M. Bączkowski, Roberto Cozatl, Anastasia Osoianu, Deniz Kumral, Jared Pool, Laura Golz, Maria V. Dreyer, Philipp Haueis, Rebecca Jost, Yelyzaveta Kramarenko, Haakon Engen, Katharina Ohrnberger, Krzysztof J. Gorgolewski, Nicolas Farrugia, Anahit Babayan, Andrea Reiter, H. Lina Schaare, Janis Reinelt, Josefin Röbbig, Marie Uhlig, Miray Erbey, Michael Gaebler, Jonathan Smallwood, Arno Villringer, Daniel S. Margulies
Software Mentions: 4
Published: over 5 years ago

10.12688/f1000research.11964.2

Preprocessed Consortium for Neuropsychiatric Phenomics dataset
Cited by: 25
Author(s): Krzysztof J. Gorgolewski, Joke Durnez, Russell A. Poldrack
Software Mentions: 4
Published: over 6 years ago

10.1093/gigascience/gix013

Science in the cloud (SIC): A use case in MRI connectomics
Cited by: 24
Author(s): Gregory Kiar, Krzysztof J. Gorgolewski, Dean Kleissas, William Gray Roncal, Brian Litt, Brian A. Wandell, Russell A. Poldrack, Martin Wiener, R. Jacob Vogelstein, Randal Burns, Joshua T. Vogelstein
Software Mentions: 4
Published: about 7 years ago

10.3389/fninf.2013.00039

Explicit B-spline regularization in diffeomorphic image registration
Cited by: 173
Author(s): Nicholas J. Tustison, Brian B. Avants
Software Mentions: 4
Published: over 11 years ago

10.1002/hbm.24920

Human body odor increases familiarity for faces during encoding‐retrieval task
Cited by: 15
Author(s): Cinzia Cecchetto, Florian Ph. S. Fischmeister, Sarah Gorkiewicz, Wolfgang Schuehly, Deepika Bagga, Valentina Parma, Veronika Schöpf
Software Mentions: 4
Published: over 4 years ago

10.1186/s40478-020-01111-4

Dysfunction in nonsense-mediated decay, protein homeostasis, mitochondrial function, and brain connectivity in ALS-FUS mice with cognitive deficits
Cited by: 12
Author(s): Wan Yun Ho, Ira Agrawal, Sheue-Houy Tyan, Emma Sanford, Wei-Tang Chang, Kenneth Teck Kiat Lim, Jolynn Zu Lin Ong, Bernice Siu Yan Tan, Aung Aung Kywe Moe, Regina Yu, Peiyan Wong, Greg Tucker‐Kellogg, Edward H. Koo, Kai‐Hsiang Chuang, Shuo-Chien Ling
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0184661

MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites
Cited by: 508
Author(s): Oscar Estéban, Daniel Birman, Marie Schaer, Oluwasanmi Koyejo, Russell A. Poldrack, Krzysztof J. Gorgolewski
Software Mentions: 4
Published: over 6 years ago

10.1126/sciadv.abg1512

Dopaminergic organization of striatum is linked to cortical activity and brain expression of genes associated with psychiatric illness
Cited by: 9
Author(s): Robert McCutcheon, Kirsten Brown, Matthew M. Nour, Stephen M. Smith, Mattia Veronese, Fernando Zelaya, Martin Osugo, Sameer Jauhar, William A. Hallett, Mitul Mehta, Oliver Howes
Software Mentions: 4
Published: almost 3 years ago

10.1371/journal.pone.0236495

An unbiased template of the Drosophila brain and ventral nerve cord
Cited by: 57
Author(s): John A. Bogovic, Hideo Otsuna, Larissa Heinrich, Masayoshi Ito, Jennifer Jeter, Geoffrey W. Meissner, Aljoscha Nern, Jennifer Colonell, Oz Malkesman, Kei Ito, Stephan Saalfeld
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-83135-x

Audiovisual structural connectivity in musicians and non-musicians: a cortical thickness and diffusion tensor imaging study
Cited by: 9
Author(s): Cecilie Møller, Eduardo A. Garza-Villarreal, Niels Chr. Hansen, Andreas Højlund, Klaus B. Bærentsen, M. Mallar Chakravarty, Peter Vuust
Software Mentions: 3
Published: about 3 years ago

10.3389/fnins.2018.00573

Detection and Distinction of Mild Brain Injury Effects in a Ferret Model Using Diffusion Tensor MRI (DTI) and DTI-Driven Tensor-Based Morphometry (D-TBM)
Cited by: 15
Author(s): Elizabeth Hutchinson, Susan C. Schwerin, Kryslaine L. Radomski, Neda Sadeghi, Michal E. Komlosh, M. Okan İrfanoğlu, Sharon L. Juliano, Carlo Pierpaoli
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0136718

Accelerating Neuroimage Registration through Parallel Computation of Similarity Metric
Cited by: 6
Author(s): Yungang Luo, Ping Liu, Lin Shi, Yishan Luo, Lei Yi, Ang Li, Jing Qin, Pheng‐Ann Heng, Defeng Wang
Software Mentions: 3
Published: over 8 years ago

10.1002/acn3.51183

Tau pathology associates with in vivo cortical thinning in Lewy body disorders
Cited by: 17
Author(s): Nicola Spotorno, David G. Coughlin, Christopher Olm, David A. Wolk, Sanjeev Vaishnavi, Leslie M. Shaw, Nabila Dahodwala, James F. Morley, John E. Duda, Andres Deik, Meredith Spindler, Alice S. Chen‐Plotkin, Edward B. Lee, John Q. Trojanowski, Corey T. McMillan, Daniel Weintraub, Murray Grossman, David J. Irwin
Software Mentions: 3
Published: over 3 years ago

10.3390/tomography7010003

Systematic Assessment of the Impact of DTI Methodology on Fractional Anisotropy Measures in Alzheimer’s Disease
Cited by: 6
Author(s): Maurizio Bergamino, Elizabeth Keeling, Ryan R. Walsh, Ashley M. Stokes
Software Mentions: 3
Published: over 3 years ago

10.3389/fninf.2014.00067

Pydpiper: a flexible toolkit for constructing novel registration pipelines
Cited by: 70
Author(s): Miriam Friedel, Matthijs C. van Eede, Jon Pipitone, M. Mallar Chakravarty, Jason P. Lerch
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0250504

Sub-millimetre resolution laminar fMRI using Arterial Spin Labelling in humans at 7 T
Cited by: 23
Author(s): Sriranga Kashyap, Dimo Ivanov, Martin Havlíček, Laurentius Huber, Benedikt A. Poser, Kâmil Uludağ
Software Mentions: 3
Published: about 3 years ago

10.7554/eLife.34354

Macro-connectomics and microstructure predict dynamic plasticity patterns in the non-human primate brain
Cited by: 22
Author(s): Seán Froudist-Walsh, Philip J. Browning, James J. Young, Kathy Murphy, Rogier B. Mars, Lazar Fleysher, Paula L. Croxson
Software Mentions: 3
Published: over 5 years ago

10.3389/fneur.2020.595463

Pathomechanisms of HIV-Associated Cerebral Small Vessel Disease: A Comprehensive Clinical and Neuroimaging Protocol and Analysis Pipeline
Cited by: 7
Author(s): Kyle D. Murray, Meera V. Singh, Yuchuan Zhuang, Nasir Uddin, Xing Qiu, Miriam Weber, Madalina E. Tivarus, Henry Z. Wang, Bogachan Sahin, Jianhui Zhong, Sanjay B. Maggirwar, Giovanni Schifitto
Software Mentions: 3
Published: over 3 years ago

10.3389/fnins.2019.00972

Brainglance: Visualizing Group Level MRI Data at One Glance
Cited by: 4
Author(s): Johannes Stelzer, Eric Lacosse, J Bause, Klaus Scheffler, Gabriele Lohmann
Software Mentions: 3
Published: over 4 years ago

10.3389/fnins.2019.01286

Neural Representation of Parental Monitoring and Links to Adolescent Risk Taking
Cited by: 4
Author(s): Tae Ho Lee, Yang Qu, Eva H. Telzer
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0204071

Deep learning-based quantification of abdominal fat on magnetic resonance images
Cited by: 10
Author(s): Andrew T. Grainger, Nicholas J. Tustison, Kun Qing, R. Jack Roy, Stuart S. Berr, Weibin Shi
Software Mentions: 3
Published: over 5 years ago

10.3389/fneur.2021.625431

Daily Morning Blue Light Therapy for Post-mTBI Sleep Disruption: Effects on Brain Structure and Function
Cited by: 9
Author(s): Adam C. Raikes, Natalie S. Dailey, Brittany Forbeck, Anna Alkozei, William D.S. Killgore
Software Mentions: 3
Published: over 3 years ago

10.3389/fneur.2020.00244

Brain Morphometry Estimation: From Hours to Seconds Using Deep Learning
Cited by: 16
Author(s): Michael Rebsamen, Yannick Suter, Roland Wiest, Mauricio Reyes, Christian Rummel
Software Mentions: 3
Published: about 4 years ago

10.7554/eLife.63551

Temporo-parietal cortex involved in modeling one’s own and others’ attention
Cited by: 10
Author(s): Arvid Guterstam, Branden J. Bio, Andrew I. Wilterson, Michael S. A. Graziano
Software Mentions: 3
Published: over 3 years ago

10.3389/fninf.2014.00044

The Insight ToolKit image registration framework
Cited by: 404
Author(s): Brian B. Avants, Nicholas J. Tustison, Michael Stauffer, Gang Song, Bangyu Wu, James C. Gee
Software Mentions: 3
Published: about 10 years ago

10.7554/eLife.44837

Modulation of tonotopic ventral medial geniculate body is behaviorally relevant for speech recognition
Cited by: 24
Author(s): Paul Glad Mihai, Michelle Moerel, Federico De Martino, Robert Trampel, Stefan J. Kiebel, Katharina von Kriegstein
Software Mentions: 3
Published: over 4 years ago

10.1038/s41398-018-0229-0

Genetic risk for schizophrenia and autism, social impairment and developmental pathways to psychosis
Cited by: 15
Author(s): Eva Velthorst, Seán Froudist-Walsh, Eli A. Stahl, Douglas M. Ruderfer, Iliyan Ivanov, Joseph D. Buxbaum, Tobias Banaschewski, Arun L.W. Bokde, Dipl-Psych Ub, Christian Büchel, Quinlan Eb, Sylvane Desrivières, Herta Flor, Frouin, Hugh Garavan, Penny Gowland, Andreas Heinz, Bernd Ittermann, Martinot Mp, Éric Artiges, Frauke Nees, Orfanos Dp, Thomas Paus, Luise Poustka, Sarah Hohmann, JH Fröhner, MN Smolka, Henrik Walter, Robert Whelan, Günter Schumann, Avi Reichenberg
Software Mentions: 3
Published: over 5 years ago

10.1186/s12916-021-01962-1

Functional connectivity changes in cerebral small vessel disease - a systematic review of the resting-state MRI literature
Cited by: 22
Author(s): Maximilian Schulz, Caroline Malherbe, Bastian Cheng, Götz Thomalla, Eckhard Schlemm
Software Mentions: 3
Published: about 3 years ago

10.7554/eLife.48114

Pretectal neurons control hunting behaviour
Cited by: 39
Author(s): Paride Antinucci, Mónica Folgueira, Isaac H. Bianco
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.55300

Temporal selectivity declines in the aging human auditory cortex
Cited by: 19
Author(s): Julia Erb, Lea‐Maria Schmitt, Jonas Obleser
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-90032-w

Machine learning based differentiation of glioblastoma from brain metastasis using MRI derived radiomics
Cited by: 23
Author(s): Sarv Priya, Yanan Liu, Caitlin Ward, Nam Le, Neetu Soni, Ravishankar Pillenahalli Maheshwarappa, Varun Monga, Honghai Zhang, Milan Sonka, Girish Bathla
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-020-78284-4

Optimization and validation of diffusion MRI-based fiber tracking with neural tracer data as a reference
Cited by: 13
Author(s): Carlos Enrique Gutierrez, Henrik Skibbe, Ken Nakae, Hiromichi Tsukada, Jean‐Sylvain Liénard, Akiya Watakabe, Junichi Hata, Marco Reisert, Alexander Woodward, Yoko Yamaguchi, Tetsuo Yamamori, Hideyuki Okano, Shin Ishii, Kenji Doya
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-71662-y

Choosing to view morbid information involves reward circuitry
Cited by: 20
Author(s): Suzanne Oosterwijk, Lukas Snoek, Jurriaan Tekoppele, Lara H. Engelbert, H. Steven Scholte
Software Mentions: 3
Published: over 3 years ago

10.2196/24356

Application of an Adaptive, Digital, Game-Based Approach for Cognitive Assessment in Multiple Sclerosis: Observational Study
Cited by: 10
Author(s): Wan-Yu Hsu, William Rowles, Joaquin A. Anguera, Chao Zhao, Annika Anderson, Amber Alexander, Simone Sacco, Roland G. Henry, Adam Gazzaley, Riley Bove
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-53144-y

Temporal stability of fMRI in medetomidine-anesthetized rats
Cited by: 28
Author(s): Nikoloz Sirmpilatze, Jürgen Baudewig, Susann Boretius
Software Mentions: 3
Published: over 4 years ago

10.3389/fnagi.2020.00238

Classification and Graphical Analysis of Alzheimer’s Disease and Its Prodromal Stage Using Multimodal Features From Structural, Diffusion, and Functional Neuroimaging Data and the APOE Genotype
Cited by: 23
Author(s): Yubraj Gupta, Ji‐In Kim, Byeong C. Kim, Goo‐Rak Kwon
Software Mentions: 3
Published: almost 4 years ago

10.1002/hbm.25036

Dynamic functional connectivity between nucleus accumbens and the central executive network relates to chronic cannabis use
Cited by: 8
Author(s): Hye Bin Yoo, Blake Edward Moya, Francesca M. Filbey
Software Mentions: 3
Published: about 4 years ago

10.1038/sdata.2018.308

A mind-brain-body dataset of MRI, EEG, cognition, emotion, and peripheral physiology in young and old adults
Cited by: 160
Author(s): Anahit Babayan, Miray Erbey, Deniz Kumral, Janis Reinelt, Andrea Reiter, Josefin Röbbig, H. Lina Schaare, Marie Uhlig, Alfred Anwander, Pierre‐Louis Bazin, Annette Horstmann, Leonie Lampe, Vadim V. Nikulin, Hadas Okon‐Singer, Sven Preusser, André Pampel, Christiane S. Rohr, Julia Sacher, Angelika Thöne-Otto, Sabrina Trapp, Till Nierhaus, Denise Altmann, Katrin Arélin, Maria Blöchl, Edith Bongartz, Patric Breig, Elena Cesnaite, Sufang Chen, Roberto Cozatl, Saskia Czerwonatis, Gabriele Dambrauskaite, Maria V. Dreyer, Jessica Enders, Melina Engelhardt, M. Fischer, Norman Forschack, Johannes Golchert, Laura Golz, Catherine-Noémie Alexandrina Guran, Susanna Hedrich, Nicole Hentschel, D. Hoffmann, Julia M. Huntenburg, Rebecca Jost, Anna Kosatschek, Stella Kunzendorf, H. Bruce Lammers, Mark E. Lauckner, Keyvan Mahjoory, Ahmad S. Kanaan, Natacha Mendes, Ramona Menger, Enzo Morino, Karina Näthe, Jennifer Neubauer, Handan Noyan, Sabine Oligschläger, Patricia Panczyszyn-Trzewik, Dorothee Poehlchen, Nadine Putzke, Sabrina Roski, Marie-Catherine Schaller, Anja Schieferbein, Benito Schlaak, Robert Schmidt, Krzysztof J. Gorgolewski, Hanna Maria Schmidt, Anne Schrimpf, Sylvia Stasch, Maria Voß, Annett Wiedemann, Daniel S. Margulies, Michael Gaebler, Arno Villringer
Software Mentions: 3
Published: over 5 years ago

10.1002/hbm.25159

Direct cortical thickness estimation using deep learning‐based anatomy segmentation and cortex parcellation
Cited by: 32
Author(s): Michael Rebsamen, Christian Rummel, Mauricio Reyes, Roland Wiest, Richard McKinley
Software Mentions: 3
Published: almost 4 years ago

10.1002/hbm.25474

Improved normalization of lesioned brains via cohort‐specific templates
Cited by: 5
Author(s): Ioannis Pappas, Henrik Hector, Kari A. Haws, Brian Curran, Andrew S. Kayser, Mark D’Esposito
Software Mentions: 3
Published: almost 3 years ago

10.1371/journal.pone.0186071

Discrete pre-processing step effects in registration-based pipelines, a preliminary volumetric study on T1-weighted images
Cited by: 5
Author(s): Nathan M. Muncy, Ariana Hedges‐Muncy, C. Brock Kirwan
Software Mentions: 3
Published: over 6 years ago

10.1002/hbm.25147

Spatially coherent and topographically organized pathways of the human globus pallidus
Cited by: 24
Author(s): Salvatore Bertino, Gianpaolo Antonio Basile, Alessia Bramanti, Giuseppe Anastasi, Angelo Quartarone, Demetrio Milardi, Alberto Cacciola
Software Mentions: 3
Published: almost 4 years ago

10.3390/diagnostics10110930

Cognitive Fatigue Is Associated with Altered Functional Connectivity in Interoceptive and Reward Pathways in Multiple Sclerosis
Cited by: 19
Author(s): Michelle H. Chen, John DeLuca, Helen M. Genova, Bing Yao, Glenn R. Wylie
Software Mentions: 3
Published: over 3 years ago

10.3389/fnagi.2019.00115

Deep Learning and Multiplex Networks for Accurate Modeling of Brain Age
Cited by: 36
Author(s): Nicola Amoroso, Marianna La Rocca, Loredana Bellantuono, Domenico Diacono, Annarita Fanizzi, Eufemia Lella, Angela Lombardi, T. Maggipinto, Sabina Tangaro, R. Bellotti
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.dib.2019.104399

Histological and diffusion-weighted magnetic resonance imaging data from normal and degenerated optic nerve and chiasm of the rat
Cited by: 1
Author(s): Omar Narvaez-Delgado, Gilberto Rojas-Vite, Ricardo Coronado-Leija, Alonso Ramírez-Manzanares, José L. Marroquín, Ramsés Noguez-Imm, Marcos Luis Aranda, Benoît Scherrer, Jorge Larriva-Sahd, Luis Concha
Software Mentions: 3
Published: over 4 years ago

10.1111/desc.12579

Differences in brain morphology and working memory capacity across childhood
Cited by: 37
Author(s): Joe Bathelt, Susan E. Gathercole, Amy Johnson, Duncan E. Astle
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13742-015-0045-x

Connectomics and new approaches for analyzing human brain functional connectivity
Cited by: 55
Author(s): R. Cameron Craddock, Rosalia L. Tungaraza, Michael P. Milham
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-020-71535-4

Sylvian fissure development is linked to differential genetic expression in the pre-folded brain
Cited by: 10
Author(s): Arka N. Mallela, Hansen Deng, Alyssa K. Brisbin, Alan Bush, Ezequiel Goldschmidt
Software Mentions: 3
Published: over 3 years ago

10.1523/ENEURO.0018-20.2020

Orienting Attention to Short-Term Memory Representations via Sensory Modality and Semantic Category Retro-Cues
Cited by: 2
Author(s): Kristina C. Backer, Bradley R. Buchsbaum, Claude Alain
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0196381

The neuroanatomy of speech sequencing at the syllable level
Cited by: 22
Author(s): Feng Rong, A. Lisette Isenberg, Erica Sun, Gregory Hickok
Software Mentions: 2
Published: over 5 years ago

10.1007/s00429-017-1556-2

Hippocampal–caudate nucleus interactions support exceptional memory performance
Cited by: 17
Author(s): N. Müller, Boris N. Konrad, Nils Kohn, Mayra López, Michael Czisch, Guillén Fernández, Martin Dresler
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0237204

Adults vs. neonates: Differentiation of functional connectivity between the basolateral amygdala and occipitotemporal cortex
Cited by: 5
Author(s): Heather A. Hansen, Jin Li, Zeynep M. Saygin
Software Mentions: 2
Published: over 3 years ago

10.3389/fnins.2013.00162

Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences
Cited by: 32
Author(s): Nicholas J. Tustison, Hans J. Johnson, Torsten Rohlfing, Arno Klein, Samik Ghosh, Luis Ibáñez, Brian B. Avants
Software Mentions: 2
Published: over 11 years ago

10.3389/fnins.2019.00169

Robust Motion Regression of Resting-State Data Using a Convolutional Neural Network Model
Cited by: 13
Author(s): Zhiguo Yang, Xiaowei Zhuang, Karthik Sreenivasan, Virendra Mishra, Dietmar Cordes, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 2
Published: about 5 years ago

10.3389/fnins.2021.663403

Energy-Period Profiles of Brain Networks in Group fMRI Resting-State Data: A Comparison of Empirical Mode Decomposition With the Short-Time Fourier Transform and the Discrete Wavelet Transform
Cited by: 9
Author(s): Dietmar Cordes, Muhammad Kaleem, Zhiguo Yang, Xiaowei Zhuang, Tim Curran, Karthik Sreenivasan, Virendra Mishra, Rajesh Nandy, Ryan R. Walsh
Software Mentions: 2
Published: almost 3 years ago

10.3389/fnins.2018.00528

On the Extraction and Analysis of Graphs From Resting-State fMRI to Support a Correct and Robust Diagnostic Tool for Alzheimer's Disease
Cited by: 4
Author(s): Claudia Bachmann, Heidi I.L. Jacobs, PierGianLuca Porta Mana, Kim Dillen, Nils Richter, Boris von Reutern, Julian Dronse, Oezguer A. Onur, Karl‐Josef Langen, Gereon R. Fink, Juraj Kukolja, Abigail Morrison
Software Mentions: 2
Published: over 5 years ago

10.3389/fnins.2018.00064

Inter-subject Registration of Functional Images: Do We Need Anatomical Images?
Cited by: 32
Author(s): Elvis Dohmatob, Gaël Varoquaux, Bertrand Thirion
Software Mentions: 2
Published: over 6 years ago

10.3389/fneur.2017.00519

Recommendations for the Use of Automated Gray Matter Segmentation Tools: Evidence from Huntington’s Disease
Cited by: 31
Author(s): Eileanoir B. Johnson, Sarah Gregory, Hans J. Johnson, Alexandra Dürr, Blair R. Leavitt, Raymund A.C. Roos, Geraint Rees, Sarah J. Tabrizi, Rachael I. Scahill
Software Mentions: 2
Published: over 6 years ago

10.3389/fnins.2021.634063

Advanced Analysis of Diffusion Tensor Imaging Along With Machine Learning Provides New Sensitive Measures of Tissue Pathology and Intra-Lesion Activity in Multiple Sclerosis
Cited by: 7
Author(s): Olayinka Oladosu, Weiqiao Liu, Bruce Pike, Marcus Koch, Luanne M. Metz, Yunyan Zhang
Software Mentions: 2
Published: about 3 years ago

10.3389/fnins.2020.00845

Neuroprotective Effects of Casein-Derived Peptide Met-Lys-Pro (MKP) in a Hypertensive Model
Cited by: 5
Author(s): Asuka Tada, Hamizah Shahirah Hamezah, Daijiro Yanagisawa, Shigehiro Morikawa, Ikuo Tooyama
Software Mentions: 2
Published: almost 4 years ago

10.1007/s11682-020-00319-1

Measuring decline in white matter integrity after systemic treatment for breast cancer: omitting skeletonization enhances sensitivity
Cited by: 15
Author(s): Yasmin Mzayek, Michiel B. de Ruiter, Hester S. A. Oldenburg, Liesbeth Reneman, Sanne B. Schagen
Software Mentions: 2
Published: almost 4 years ago

10.3389/fneur.2020.00153

Combined Diffusion Tensor Imaging and Quantitative Susceptibility Mapping Discern Discrete Facets of White Matter Pathology Post-injury in the Rodent Brain
Cited by: 14
Author(s): Neha Soni, Viktor Vegh, Xuan Vinh To, Abdalla Z. Mohamed, Karin Borges, Fatima A. Nasrallah
Software Mentions: 2
Published: about 4 years ago

10.1038/s42003-019-0611-3

An improved neuroanatomical model of the default-mode network reconciles previous neuroimaging and neuropathological findings
Cited by: 197
Author(s): Pedro Nascimento Alves, Chris Foulon, Vyacheslav Karolis, Danilo Bzdok, Daniel S. Margulies, Emmanuelle Volle
Software Mentions: 2
Published: over 4 years ago

10.1002/acn3.51421

Effects of simvastatin on white matter integrity in healthy middle‐aged adults
Cited by: 6
Author(s): N. Vogt, Jack F.V. Hunt, Yue Ma, Carol A. Van Hulle, Nagesh Adluru, Richard J. Chappell, Karen K. Lazar, Laura Jacobson, Benjamin P. Austin, Sanjay Asthana, Sterling C. Johnson, Barbara B. Bendlin, Cynthia M. Carlsson
Software Mentions: 2
Published: almost 3 years ago

10.3389/fneur.2020.00381

The Effect of Scan Length on the Assessment of BOLD Delay in Ischemic Stroke
Cited by: 7
Author(s): Ayse Ceren Tanrıtanır, Kersten Villringer, Ivana Galinović, Ulrike Grittner, Evgeniya Kirilina, Jochen B. Fiebach, Arno Villringer, Ahmed A. Khalil
Software Mentions: 2
Published: about 4 years ago

10.3389/fnins.2015.00061

Segmentation of brain magnetic resonance images based on multi-atlas likelihood fusion: testing using data with a broad range of anatomical and photometric profiles
Cited by: 47
Author(s): Xiaoying Tang, Deana Crocetti, Kwame S. Kutten, Can Ceritoglu, Marilyn Albert, Susumu Mori, Stewart H. Mostofsky, Michael I. Miller
Software Mentions: 2
Published: about 9 years ago

10.3389/fninf.2020.00014

MonkeyCBP: A Toolbox for Connectivity-Based Parcellation of Monkey Brain
Cited by: 4
Author(s): Bin He, Zhengyi Yang, Lingzhong Fan, Bin Gao, Hai Li, Chuyang Ye, Bo You, Tianzi Jiang
Software Mentions: 2
Published: about 4 years ago

Projects: cran: ANTs

Papers Mentioning ANTs 393