Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Azimuth
https://packages.ecosyste.ms/registries/pypi.org/packages/Azimuth
Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
5 versions
Latest release: over 7 years ago
1,673 downloads last month
Papers Mentioning Azimuth 10
10.1016/j.cell.2021.04.048
Integrated analysis of multimodal single-cell dataCited by: 4,423
Author(s): Yuhan Hao, Stephanie Hao, Erica Andersen‐Nissen, William M. Mauck, Shiwei Zheng, Andrew Butler, Madeline Lee, Aaron J. Wilk, Charlotte A. Darby, Michael Zager, Paul Hoffman, Marlon Stoeckius, Efthymia Papalexi, Eleni P. Mimitou, Jaison Jain, Avi Srivastava, T.A. Stuart, Lamar M. Fleming, Bertrand Z. Yeung, Angela J. Rogers, Juliana McElrath, Catherine A. Blish, Raphaël Gottardo, Peter Smibert, Rahul Satija
Software Mentions: 13
Published: about 3 years ago
10.1099/mgen.0.000524
BSGatlas: a unified Bacillus subtilis genome and transcriptome annotation atlas with enhanced information accessCited by: 12
Author(s): Adrian Sven Geissler, Christian Anthon, Ferhat Alkan, Enrique González-Tortuero, Line Dahl Poulsen, Thomas Beuchert Kallehauge, Anne Breüner, Stefan E. Seemann, Jeppe Vinther, Jan Gorodkin
Software Mentions: 12
Published: over 3 years ago
10.3389/fonc.2020.584404
In silico Method in CRISPR/Cas System: An Expedite and Powerful BoosterCited by: 6
Author(s): Yuwei Zhang, Guofang Zhao, Fatma Ahmed, Tianfei Yi, Shiyun Hu, Ting Cai, Qi Liao
Software Mentions: 11
Published: over 3 years ago
10.1371/journal.pcbi.1008605
Machine learning based CRISPR gRNA design for therapeutic exon skippingCited by: 5
Author(s): Wilson Louie, Max W. Shen, Zakir Tahiry, Sophia Zhang, Daniel Worstell, Christopher A. Cassa, Richard I. Sherwood, David K. Gifford
Software Mentions: 8
Published: over 3 years ago
10.7554/eLife.52511
ERK3/MAPK6 controls IL-8 production and chemotaxisCited by: 23
Author(s): Katarzyna Bogucka, Malvika Pompaiah, Fédérico Marini, Harald Binder, Gregory S. Harms, Manuel Kaulich, Matthias Klein, Christian Michel, Markus P. Radsak, Sebastian Rosigkeit, Peter Grimminger, Hansjörg Schild, Krishnaraj Rajalingam
Software Mentions: 7
Published: about 4 years ago
10.1371/journal.pone.0181943
CRISPRpred: A flexible and efficient tool for sgRNAs on-target activity prediction in CRISPR/Cas9 systemsCited by: 63
Author(s): Md. Khaledur Rahman, Mahfuzur Rahman
Software Mentions: 7
Published: almost 7 years ago
10.3390/v13071197
Leveraging Novel Integrated Single-Cell Analyses to Define HIV-1 Latency ReversalCited by: 3
Author(s): Suhui Zhao, Athe Tsibris
Software Mentions: 6
Published: almost 3 years ago
10.3389/fcell.2021.645276
Understanding the Adult Mammalian Heart at Single-Cell RNA-Seq ResolutionCited by: 9
Author(s): Ernesto Marín-Sedeño, Xabier Martínez de Morentin, José M. Pérez‐Pomares, David Green, Adrián Ruiz‐Villalba
Software Mentions: 3
Published: about 3 years ago
10.1093/bib/bbz145
Domain-specific introduction to machine learning terminology, pitfalls and opportunities in CRISPR-based gene editingCited by: 12
Author(s): Aidan O’Brien, Gaétan Burgio, Denis C. Bauer
Software Mentions: 2
Published: over 4 years ago
10.1093/g3journal/jkab216
AddTag, a two-step approach with supporting software package that facilitates CRISPR/Cas-mediated precision genome editingCited by: 4
Author(s): Thaddeus D. Seher, Namkha Nguyen, Diana Ramos, Priyanka Bapat, Clarissa J. Nobile, Suzanne Sindi, Aaron D. Hernday
Software Mentions: 1
Published: almost 3 years ago