Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.cell.2021.04.048

https://doi.org/10.1016/j.cell.2021.04.048

Cited by: 4,423
Author(s): Yuhan Hao, Stephanie Hao, Erica Andersen‐Nissen, William M. Mauck, Shiwei Zheng, Andrew Butler, Madeline Lee, Aaron J. Wilk, Charlotte A. Darby, Michael Zager, Paul Hoffman, Marlon Stoeckius, Efthymia Papalexi, Eleni P. Mimitou, Jaison Jain, Avi Srivastava, T.A. Stuart, Lamar M. Fleming, Bertrand Z. Yeung, Angela J. Rogers, Juliana McElrath, Catherine A. Blish, Raphaël Gottardo, Peter Smibert, Rahul Satija
Published: almost 3 years ago

Software Mentions 13

bioconductor: chromVAR
Chromatin Variation Across Regions
Papers that mentioned: 46
bioconductor: M3Drop
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
Papers that mentioned: 21
bioconductor: Nebulosa
Single-Cell Data Visualisation Using Kernel Gene-Weighted Density Estimation
Papers that mentioned: 3
bioconductor: scmap
A tool for unsupervised projection of single cell RNA-seq data
Papers that mentioned: 34
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
cran: cellranger
Translate Spreadsheet Cell Ranges to Rows and Columns
Papers that mentioned: 79
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: Signac
Analysis of Single-Cell Chromatin Data
Papers that mentioned: 24
pypi: Azimuth
Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
Papers that mentioned: 10
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: scArches
Transfer learning with Architecture Surgery on Single-cell data
Papers that mentioned: 3
pypi: scmap
Assigns rgb colors to points on sphere.
Papers that mentioned: 34
pypi: scrublet
Doublet prediction in single-cell RNA-sequencing data
Papers that mentioned: 9