Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: scrublet

https://packages.ecosyste.ms/registries/pypi.org/packages/scrublet

Doublet prediction in single-cell RNA-sequencing data
4 versions
Latest release: almost 4 years ago
10 dependent packages
3,610 downloads last month

Papers Mentioning scrublet 9

Integrated analysis of multimodal single-cell data
Cited by: 4,423
Author(s): Yuhan Hao, Stephanie Hao, Erica Andersen‐Nissen, William M. Mauck, Shiwei Zheng, Andrew Butler, Madeline Lee, Aaron J. Wilk, Charlotte A. Darby, Michael Zager, Paul Hoffman, Marlon Stoeckius, Efthymia Papalexi, Eleni P. Mimitou, Jaison Jain, Avi Srivastava, T.A. Stuart, Lamar M. Fleming, Bertrand Z. Yeung, Angela J. Rogers, Juliana McElrath, Catherine A. Blish, Raphaël Gottardo, Peter Smibert, Rahul Satija
Software Mentions: 13
Published: over 3 years ago

10.1093/bioinformatics/btz698

scds: computational annotation of doublets in single-cell RNA sequencing data
Cited by: 114
Author(s): Abha Bais, Dennis Kostka
Software Mentions: 7
Published: about 5 years ago

10.1038/s41392-021-00703-3

Differential immune responses in pregnant patients recovered from COVID-19
Cited by: 21
Author(s): Ge Chen, Yiming Zhang, Yaoyao Zhang, Jihui Ai, Bin Yang, Mengge Cui, Qiande Liao, Hanxiao Chen, Hualin Bai, Dashing Shang, Jing Chen, Chaoyang Sun, Haiyi Liu, Fengyuan Liu, Biming Mao, Guoqiang Sun, Lu Chen, Jing-wen Lin, Kezhen Li
Software Mentions: 7
Published: over 3 years ago

10.1111/cpr.12968

Systemic transcriptome comparison between early‐ And late‐onset pre‐eclampsia shows distinct pathology and novel biomarkers
Cited by: 15
Author(s): Fang Guo, Zhenan Bao, Hao Yang, Yixi Fu, Yaning Wang, Jianming Huang, Min Cheng, Xiaobo Li, Zhuo Shen, Li Li, Ping He, Andy Peng Xiang, Shuaiyu Wang, Hongbo Zhang
Software Mentions: 5
Published: almost 4 years ago

10.7554/eLife.69825

Transcriptomic encoding of sensorimotor transformation in the midbrain
Cited by: 24
Author(s): Zhiyong Xie, Mengdi Wang, Zeyuan Liu, Congping Shang, Changjiang Zhang, Le Sun, Huating Gu, Gengxin Ran, Qing Pei, Qiang Ma, Meizhu Huang, Junjing Zhang, Rui Lin, Youtong Zhou, Jiyao Zhang, Miao Zhao, Minmin Luo, Qian Wu, Peng Cao, Xiaoqun Wang
Software Mentions: 3
Published: over 3 years ago

10.1038/s42003-020-01232-5

Analysis of single-cell transcriptomes links enrichment of olfactory receptors with cancer cell differentiation status and prognosis
Cited by: 17
Author(s): Siddhant Kalra, Aayushi Mittal, Kavya Gupta, Vrinda Singhal, Anku Gupta, Tripti Mishra, Srivatsava Naidu, Debarka Sengupta, Gaurav Ahuja
Software Mentions: 3
Published: about 4 years ago

10.1126/scitranslmed.abe4282

Lung transplantation for patients with severe COVID-19
Cited by: 231
Author(s): Ankit Bharat, Melissa Querrey, Nikolay S. Markov, Samuel S. Kim, Chitaru Kurihara, Rafael Garza-Castillon, Adwaiy Manerikar, Ali Shilatifard, Rade Tomic, Yuliya Politanska, Hiam Abdala‐Valencia, Anjana V. Yeldandi, Jon W. Lomasney, Alexander V. Misharin, G. R. Scott Budinger
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pgen.1009497

Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images
Cited by: 36
Author(s): Hannah Currant, Pirro G. Hysi, Tomas Fitzgerald, Puya Gharahkhani, Pieter W.M. Bonnemaijer, Anne Senabouth, Alex W. Hewitt, UK Biobank Eye, Denize Atan, Tin Aung, Jason Charng, Hélène Choquet, Jamie E Craig, Peng Tee Khaw, Caroline C W Klaver, Michiaki Kubo, Jue‐Sheng Ong, Louis R. Pasquale, Charles Reisman, Maciej Daniszewski, Joseph E. Powell, Alice Pébay, Mark James Simcoe, Alberta A H J Thiadens, Cornelia M. van Duijn, Seyhan Yazar, Eric Jorgenson, Stuart MacGregor, Chris Hammond, David A. Mackey, Janey L. Wiggs, Paul J. Foster, Praveen J Patel, Ewan Birney, Anthony P Khawaja
Software Mentions: 2
Published: over 3 years ago

10.1242/dev.186569

Runx1 promotes scar deposition and inhibits myocardial proliferation and survival during zebrafish heart regeneration
Cited by: 40
Author(s): Jana Koth, Xiaonan Wang, Abigail C. Killen, William T. Stockdale, Helen G. Potts, Ann Jefferson, Florian Bonkhofer, Paul R. Riley, Roger Patient, Berthold Göttgens, Mathilda T.M. Mommersteeg
Software Mentions: 1
Published: over 4 years ago