pypi: drc | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0146021

Dose-Response Analysis Using R
Cited by: 2,013
Author(s): Christian Ritz, Florent Baty, J. C. Streibig, Daniel Gerhard
Software Mentions: 20
Published: over 8 years ago

10.7717/peerj.5794

beadplexr: reproducible and automated analysis of multiplex bead assays
Cited by: 4
Author(s): Ulrik Stervbo, Timm H. Westhoff, Nina Babel
Software Mentions: 20
Published: over 5 years ago

Compatibility of Evolutionary Responses to Constituent Antibiotics Drive Resistance Evolution to Drug Pairs
Cited by: 14
Author(s): Leonie Johanna Jahn, Daniel Simon, Mia Jensen, Charles B. Bradshaw, Mostafa Mostafa Hashim Ellabaan, Morten Otto Alexander Sommer
Software Mentions: 16
Published: about 3 years ago

10.3389/fonc.2020.01767

Ovarian Blood Sampling Identifies Junction Plakoglobin as a Novel Biomarker of Early Ovarian Cancer
Cited by: 6
Author(s): Florian Weiland, Noor A. Lokman, Manuela Klingler‐Hoffmann, Thomas W. Jobling, Andrew N. Stephens, Karin Sundfeldt, Peter Hoffmann, Martin K. Oehler
Software Mentions: 13
Published: over 3 years ago

10.1007/s12035-018-1112-y

Differentiation-Induced Remodelling of Store-Operated Calcium Entry Is Independent of Neuronal or Glial Phenotype but Modulated by Cellular Context
Cited by: 5
Author(s): Claire Whitworth, Christopher P.F. Redfern, Timothy R. Cheek
Software Mentions: 13
Published: almost 6 years ago

10.7717/peerj.4251

Sicegar: R package for sigmoidal and double-sigmoidal curve fitting
Cited by: 28
Author(s): Mehmet Umut Caglar, Ashley I. Teufel, Claus O. Wilke
Software Mentions: 11
Published: over 6 years ago

10.1371/journal.pgen.1008748

Polygenic adaptation of rosette growth in Arabidopsis thaliana
Cited by: 19
Author(s): Benedict Wieters, Kim A. Steige, Fei He, Evan Koch, Sebastián E. Ramos-Onsins, Hongya Gu, Ya‐Long Guo, Shamil Sunyaev, Juliette de Meaux
Software Mentions: 11
Published: over 3 years ago

10.15252/msb.20177697

Screening drug effects in patient‐derived cancer cells links organoid responses to genome alterations
Cited by: 153
Author(s): Julia Jabs, Franziska Maria Zickgraf, Jeongbin Park, Sven Wagner, Xiaoqi Jiang, Katharina Jechow, Kortine Kleinheinz, Umut Toprak, Marc A. Schneider, Michael Meister, Saskia Spaich, Marc Sütterlin, Matthias Schlesner, Andreas Trumpp, Martin R. Sprick, Roland Eils, Christian Conrad
Software Mentions: 11
Published: over 6 years ago

10.1038/s41598-020-60654-7

Pesticide pollution in freshwater paves the way for schistosomiasis transmission
Cited by: 25
Author(s): Jeremias Martin Becker, Akbar Ganatra, Faith Jebiwot Kandie, Lina Mühlbauer, Jörg Ahlheim, Werner Brack, Baldwyn Torto, Eric L. Agola, Francis McOdimba, Henner Hollert, Ulrike Fillinger, Matthias Liess
Software Mentions: 10
Published: about 4 years ago

10.1186/s12859-017-1936-x

Software for rapid time dependent ChIP-sequencing analysis (TDCA)
Cited by: 1
Author(s): Mike Myschyshyn, Marco Farren-Dai, Tien-Jui Chuang, David J. Vocadlo
Software Mentions: 9
Published: over 6 years ago

10.1038/s41598-021-86638-9

Entomopathogenic fungi as the microbial frontline against the alien Eucalyptus pest Gonipterus platensis in Brazil
Cited by: 17
Author(s): Carolina Jordan, Pâmela Letícia dos Santos, Leiliane Oliveira, Maurício Magalhães Domingues, Bianca Cristina Costa Gêa, M. F. S. Ribeiro, Gabriel Moura Mascarin, Carlos Frederico Wilcken
Software Mentions: 9
Published: about 3 years ago

10.1128/mBio.01527-20

A Genome-Based Model to Predict the Virulence of Pseudomonas aeruginosa Isolates
Cited by: 11
Author(s): Nathan B. Pincus, Egon A. Ozer, Jonathan P. Allen, M. Nguyen, James J. Davis, Deborah R. Winter, Chih Hsien Chuang, Cheng-Hsun Chiu, Laura Zamorano, Antonio Oliver, Alan R. Hauser
Software Mentions: 9
Published: over 3 years ago

10.1155/2019/3717239

Primary Production in the Water Column as Major Structuring Element of the Biogeographical Distribution and Function of Archaea in Deep-Sea Sediments of the Central Pacific Ocean
Cited by: 9
Author(s): Franziska Wemheuer, Avril Jean Elisabeth von Hoyningen-Huene, Marion Pohlner, Julius Degenhardt, Bert Engelen, Rolf Daniel, Bernd Wemheuer
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-019-39019-2

Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data
Cited by: 10
Author(s): Marcela Franco, Ashwini Jeggari, Sylvain Peuget, Franziska Böttger, Galina Selivanova, Andrey Alexeyenko
Software Mentions: 9
Published: about 5 years ago

10.3390/insects12070639

Estimation of the Recent Expansion Rate of Ruspolia nitidula (Orthoptera) on a Regional and Landscape Scale
Cited by: 3
Author(s): Oto Kaláb, Petr Pyszko, Petr Kočárek
Software Mentions: 9
Published: almost 3 years ago

10.1038/s41598-019-50540-2

Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands
Cited by: 23
Author(s): Franziska Wemheuer, Bernd Wemheuer, Rolf Daniel, Stefan Vidal
Software Mentions: 9
Published: over 4 years ago

10.3389/fendo.2020.561370

Adropin Stimulates Proliferation and Inhibits Adrenocortical Steroidogenesis in the Human Adrenal Carcinoma (HAC15) Cell Line
Cited by: 14
Author(s): Ewelina Stelcer, Paulina Milecka, Hanna Komarowska, Karol Jopek, Marianna Tyczewska, Marta Szyszka, Marta Leśniczak, Wiktoria Suchorska, Karlygash Bekova, Beata Szczepaniak, Marek Ruchała, Marek Karczewski, T Wierzbicki, Witold Szaflarski, Ludwik K. Malendowicz, Marcin Ruciński
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pntd.0006862

Viridot: An automated virus plaque (immunofocus) counter for the measurement of serological neutralizing responses with application to dengue virus
Cited by: 89
Author(s): Leah C. Katzelnick, Ana Coello Escoto, Benjamin D. McElvany, Christian Chávez, Henrik Salje, Wensheng Luo, Isabel Rodríguez-Barraquer, Richard G. Jarman, Anna P. Durbin, Sean A. Diehl, Derek J. Smith, Stephen S. Whitehead, Derek A. T. Cummings
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2021.696398

The Microbiome of the Medicinal Plants Achillea millefolium L. and Hamamelis virginiana L.
Cited by: 10
Author(s): Simon Sauer, Leon Dlugosch, Dietmar R. Kammerer, Florian C. Stintzing, Meinhard Simon
Software Mentions: 8
Published: almost 3 years ago

10.3390/microorganisms5040068

Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea
Cited by: 16
Author(s): Bernd Wemheuer, Franziska Wemheuer, Dimitri V. Meier, Sara Billerbeck, Helge-Ansgar Giebel, Meinhard Simon, Christoph Scherber, Rolf Daniel
Software Mentions: 7
Published: over 6 years ago

10.1007/s00425-021-03664-7

Sex dimorphism in dioecious Palmer amaranth (Amaranthus palmeri) in response to water stress
Cited by: 12
Author(s): Mohsen B. Mesgaran, Maor Matzrafi, Sara Ohadi
Software Mentions: 7
Published: almost 3 years ago

10.1186/s12885-017-3689-3

GRcalculator: an online tool for calculating and mining dose–response data
Cited by: 57
Author(s): Nicholas Clark, Marc Hafner, Michal Kouril, Liz Williams, Jeremy Muhlich, Marcin Pilarczyk, Mario Niepel, Peter K. Sorger, Mario Medvedovic
Software Mentions: 7
Published: over 6 years ago

10.1186/s12936-020-03181-0

Characterization of two in vivo challenge models to measure functional activity of monoclonal antibodies to Plasmodium falciparum circumsporozoite protein
Cited by: 19
Author(s): Rama Raghunandan, Bryan T. Mayer, Yevel Flores-García, Monica W. Gerber, Raphaël Gottardo, Hugo Jhun, Sonia M. Herrera, Daniel W. Pérez-Ramos, Emily Locke, C. Richter King, Fidel Zavala
Software Mentions: 7
Published: about 4 years ago

10.1038/srep40914

Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes
Cited by: 69
Author(s): Franziska Wemheuer, Kristin Kaiser, Petr Karlovský, Rolf Daniel, Stefan Vidal, Bernd Wemheuer
Software Mentions: 7
Published: over 7 years ago

10.1007/s00253-021-11475-9

Do initial concentration and activated sludge seasonality affect pharmaceutical biotransformation rate constants?
Cited by: 10
Author(s): Tamara J. H. M. van Bergen, Ana B. Rios‐Miguel, Tom M. Nolte, A.M.J. Ragas, Rosalie van Zelm, Martien H.F. Graumans, Paul T.J. Scheepers, Mike S. M. Jetten, A. Jan Hendriks, Cornelia U. Welte
Software Mentions: 7
Published: almost 3 years ago

10.7554/eLife.69549

A precisely adjustable, variation-suppressed eukaryotic transcriptional controller to enable genetic discovery
Cited by: 15
Author(s): Aslı Azizoğlu, Roger Brent, Fabian Rudolf
Software Mentions: 7
Published: almost 3 years ago

10.1186/1471-2105-14-145

Quality control, analysis and secure sharing of Luminex® immunoassay data using the open source LabKey Server platform
Cited by: 10
Author(s): Josh Eckels, Cory Nathe, Elizabeth Nelson, Sara G Shoemaker, Elizabeth Van Nostrand, Nicole L. Yates, Vicki C. Ashley, Linda J. Harris, Mark Bollenbeck, Youyi Fong, Georgia D. Tomaras, Britt Piehler
Software Mentions: 7
Published: about 11 years ago

10.1038/s41598-020-67324-8

Venom alkaloids against Chagas disease parasite: search for effective therapies
Cited by: 10
Author(s): Rafael Cardoso Maciel Costa Silva, Eduardo Gonçalves Paterson Fox, Fabio M. Gomes, Daniel F. Feijó, Isabela Ramos, Carolina M. Koeller, Tatiana F. R. Costa, Nathalia S. Rodrigues, Ana Paula Lima, Geórgia C. Atella, Kildare Miranda, Alejandra Cecilia Schoijet, Guillermo D. Alonso, Ednildo A. Machado, Norton Heise
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0187548

Multimodel inference applied to oxygen recovery kinetics after 6-min walk tests in patients with chronic obstructive pulmonary disease
Cited by: 2
Author(s): Florent Baty, Christian Ritz, Signe Marie Jensen, Lukas Kern, Michael Tamm, Martin Brutsche
Software Mentions: 7
Published: over 6 years ago

10.1093/conphys/coz076

Early life history responses and phenotypic shifts in a rare endemic plant responding to climate change
Cited by: 5
Author(s): Daniel E. Winkler, Michelle Lin, José Delgadillo, Kenneth James Chapin, Travis E. Huxman
Software Mentions: 7
Published: over 5 years ago

10.7554/eLife.35690

Selective increases in inter-individual variability in response to environmental enrichment in female mice
Cited by: 41
Author(s): Julia Körholz, Sara Zocher, Anna N. Grzyb, Benjamin Morisse, Alexandra Poetzsch, Fanny Ehret, Christopher Schmied, Gerd Kempermann
Software Mentions: 7
Published: over 5 years ago

10.3390/ijms20215412

Analysis of Transcriptome, Selected Intracellular Signaling Pathways, Proliferation and Apoptosis of LNCaP Cells Exposed to High Leptin Concentrations
Cited by: 12
Author(s): Marta Szyszka, Lukasz Paschke, Marianna Tyczewska, Karol Jopek, Piotr Celichowski, Paulina Milecka, G. F. Sultanova, Ewelina Stelcer, Agnieszka Malińska, Ludwik K. Malendowicz, Marcin Ruciński
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0034846

Visualization and Curve-Parameter Estimation Strategies for Efficient Exploration of Phenotype Microarray Kinetics
Cited by: 152
Author(s): Lea A. I. Vaas, Johannes Sikorski, Victoria Michael, Markus Göker, Hans‐Peter Klenk
Software Mentions: 6
Published: about 12 years ago

10.7554/eLife.53898

The skin microbiome facilitates adaptive tetrodotoxin production in poisonous newts
Cited by: 44
Author(s): Patric M Vaelli, Kevin R. Theis, Janet E. Williams, Lauren A. O’Connell, James A. Foster, Heather L. Eisthen
Software Mentions: 6
Published: about 4 years ago

10.3389/fvets.2019.00142

Modeling the Transmission of Vibrio aestuarianus in Pacific Oysters Using Experimental Infection Data
Cited by: 14
Author(s): Coralie Lupo, Marie‐Agnès Travers, Delphine Tourbiez, C. Barthélémy, Gaël Beaunée, Pauline Ezanno
Software Mentions: 6
Published: about 5 years ago

10.1155/2020/3827125

A New Method to Test Molluscicides against the Philippine Schistosomiasis Snail Vectors
Cited by: 1
Author(s): Darwin C. Gomez, Neil Anacta
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pntd.0008487

Non-invasive monitoring of drug action: A new live in vitro assay design for Chagas’ disease drug discovery
Cited by: 5
Author(s): Anna Fesser, Olivier Braissant, F.J. Olmo, John M. Kelly, Pascal Mäser, Marcel Kaiser
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0240538

Populations of arable weed species show intra-specific variability in germination base temperature but not in early growth rate
Cited by: 5
Author(s): Jana Bürger, Andrey V. Malyshev, Nathalie Colbach
Software Mentions: 6
Published: over 3 years ago

10.1186/gm549

A genome scale overexpression screen to reveal drug activity in human cells
Cited by: 30
Author(s): Anthony Arnoldo, Saranya Kittanakom, Lawrence E. Heisler, Anthony B. Mak, Andrey I. Shukalyuk, Dax Torti, Jason Moffat, Guri Giaever, Corey Nislow
Software Mentions: 6
Published: over 10 years ago

10.1002/ece3.2150

Plant regeneration from seeds responds to phylogenetic relatedness and local adaptation in Mediterranean Romulea (Iridaceae) species
Cited by: 31
Author(s): Angelino Carta, Sarah Hanson, Jonas V. Müller
Software Mentions: 6
Published: almost 8 years ago

10.3389/fimmu.2021.630389

Identification of Novel Genetic Regulatory Region for Proprotein Convertase FURIN and Interferon Gamma in T Cells
Cited by: 6
Author(s): Zsuzsanna Ortutay, Anna Grönholm, Melina Laitinen, Melinda Keresztes-Andrei, Ismaïl Hermelo, Marko Pesu
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0197074

Multi-site evaluation of the LN34 pan-lyssavirus real-time RT-PCR assay for post-mortem rabies diagnostics
Cited by: 43
Author(s): Crystal M. Gigante, Lisa Dettinger, James Powell, Melanie Seiders, Rene Edgar Condori, Richard Griesser, Kenneth Okogi, Maria P. Carlos, Kendra N. Pesko, Mike Breckenridge, Edson Michael M. Simon, Maria Yna Joyce Chu, April Davis, Scott Brunt, Lillian A. Orciari, Pamela A. Yager, William C. Carson, Claire Hartloge, Jeremiah T. Saliki, Susan Sánchez, Mojgan Deldari, Kristina Hsieh, Ashutosh Wadhwa, Kimberly Wilkins, Veronica Yung Peredo, Patricia Rabideau, Nina Gruhn, Rolain Cadet, Shrikrishna Isloor, Sujith S Nath, Tomy Joseph, Jinxin Gao, Ryan M. Wallace, Mary G. Reynolds, Victoria A. Olson, Li Yu
Software Mentions: 6
Published: about 6 years ago

10.7554/eLife.42374

A generally conserved response to hypoxia in iPSC-derived cardiomyocytes from humans and chimpanzees
Cited by: 31
Author(s): Michelle C. Ward, Yoav Gilad
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-017-11783-z

Impacts of light limitation on corals and crustose coralline algae
Cited by: 45
Author(s): Pia Bessell-Browne, Andrew P. Negri, Rebecca Fisher, Peta L. Clode, Ross Jones
Software Mentions: 6
Published: over 6 years ago

10.1098/rspb.2017.2849

Nursing protects honeybee larvae from secondary metabolites of pollen
Cited by: 28
Author(s): Matteo A. Lucchetti, Verena Kilchenmann, Gaétan Glauser, Christophe Praz, Christina Kast
Software Mentions: 6
Published: about 6 years ago

10.3390/microorganisms8030405

Agroforestry Management Systems Drive the Composition, Diversity, and Function of Fungal and Bacterial Endophyte Communities in Theobroma Cacao Leaves
Cited by: 19
Author(s): Franziska Wemheuer, Dirk Hölscher, Bernd Wemheuer, Rolf Daniel, Stefan Vidal, Hervé Bertin Bisseleua Daghela
Software Mentions: 6
Published: about 4 years ago

10.3390/microorganisms7020037

Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes
Cited by: 12
Author(s): Bernd Wemheuer, Torsten Thomas, Franziska Wemheuer
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-018-30509-3

Drug-based perturbation screen uncovers synergistic drug combinations in Burkitt lymphoma
Cited by: 20
Author(s): Katarzyna Tomska, Roman Kurilov, Kwang Seok Lee, Jennifer Hüllein, Marina Lukas, Leopold Sellner, Tatjana Walther, Lena Wagner, Małgorzata Oleś, Benedikt Brors, Wolfgang Huber, Thorsten Zenz
Software Mentions: 6
Published: almost 6 years ago

10.3390/ijms21176382

Antimicrobial and Amyloidogenic Activity of Peptides Synthesized on the Basis of the Ribosomal S1 Protein from Thermus Thermophilus
Cited by: 17
Author(s): Stanislav R. Kurpe, Sergei Y. Grishin, Alexey K. Surin, Olga M. Selivanova, Р. С. Фадеев, Ulyana F. Dzhus, E. Yu. Gorbunova, Leila G. Mustaeva, Vyacheslav N. Azev, Oxana V. Galzitskaya
Software Mentions: 5
Published: over 3 years ago

10.3390/jof7040304

Marker Assisted Selection of Malic-Consuming Saccharomyces cerevisiae Strains for Winemaking. Efficiency and Limits of a QTL’s Driven Breeding Program
Cited by: 4
Author(s): Charlotte Vion, Emilien Peltier, Margaux Bernard, Maïtena Muro, Philippe Marullo
Software Mentions: 5
Published: about 3 years ago

10.7717/peerj.4936

Assessment of the ecotoxicity of urban estuarine sediment using benthic and pelagic copepod bioassays
Cited by: 5
Author(s): Maria P. Charry, Vaughan Keesing, Mark J. Costello, Louis A. Tremblay
Software Mentions: 5
Published: almost 6 years ago

10.3390/ijerph18168591

Toxicological Comparison of Mancozeb and Zoxamide Fungicides at Environmentally Relevant Concentrations by an In Vitro Approach
Cited by: 11
Author(s): Gabriele Lori, Roberta Tassinari, Laura Narciso, Ion Udroiu, Antonella Sgura, Francesca Maranghi, Sabrina Tait
Software Mentions: 5
Published: almost 3 years ago

10.12688/f1000research.8694.1

IncucyteDRC: An R package for the dose response analysis of live cell imaging data
Cited by: 8
Author(s): Phil Chapman, Dominic I. James, Amanda J. Watson, Gemma Hopkins, Ian D. Waddell, Donald Ogilvie
Software Mentions: 5
Published: almost 8 years ago

10.1186/s13071-016-1514-5

Effects of larvicidal and larval nutritional stresses on Anopheles gambiae development, survival and competence for Plasmodium falciparum
Cited by: 26
Author(s): Amélie Vantaux, Issiaka Ouattarra, Thierry Léfèvre, Kounbobr Roch Dabiré
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-019-44679-1

The ability of Anopheles gambiae mosquitoes to bite through a permethrin-treated net and the consequences for their fitness
Cited by: 22
Author(s): Gaël Hauser, Kevin Thiévent, Jacob C. Koella
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13054-017-1891-y

Hypovitaminosis C and vitamin C deficiency in critically ill patients despite recommended enteral and parenteral intakes
Cited by: 273
Author(s): Anitra C. Carr, Patrice Rosengrave, Simone Bayer, Stephen T. Chambers, Jan Mehrtens, Geoff Shaw
Software Mentions: 5
Published: over 6 years ago

10.1080/19336918.2015.1120398

High-resolution micromechanical measurement in real time of forces exerted by living cells
Cited by: 1
Author(s): Robert Swierczewski, John Hedley, Christopher P.F. Redfern
Software Mentions: 5
Published: about 8 years ago

10.1038/srep43541

Early spatiotemporal-specific changes in intermediate signals are predictive of cytotoxic sensitivity to TNFα and co-treatments
Cited by: 9
Author(s): Lit‐Hsin Loo, Nicola Bougen-Zhukov, Wei-Ling Cecilia Tan
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.ppat.1009701

Control of SARS-CoV-2 infection after Spike DNA or Spike DNA+Protein co-immunization in rhesus macaques
Cited by: 11
Author(s): Margherita Rosati, Mahesh Agarwal, Xintao Hu, Santhi Devasundaram, Dimitris Stellas, Bhabadeb Chowdhury, Jenifer Bear, Robert T. Burns, Duncan Donohue, Laurent Pessaint, Hanné Andersen, Mark G. Lewis, Evangelos Terpos, Meletios A. Dimopoulos, Alexander Wlodawer, James I. Mullins, David Venzon, George N. Pavlakis, Barbara K. Felber
Software Mentions: 5
Published: over 2 years ago

10.1002/ieam.4350

Glyphosate Toxicity to Native Nontarget Macrophytes Following Three Different Routes of Incidental Exposure
Cited by: 17
Author(s): Verena Sesin, Christina M. Davy, Kenneth N. Stevens, Rebekah Hamp, Joanna R. Freeland
Software Mentions: 5
Published: over 3 years ago

10.1093/jxb/eraa289

Measuring Rubisco activity: challenges and opportunities of NADH-linked microtiter plate-based and 14C-based assays
Cited by: 11
Author(s): Cristina Rodrigues Gabriel Sales, Anabela Bernardes da Silva, Elizabete Carmo‐Silva
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pbio.2004356

Antibiotic combination efficacy (ACE) networks for a Pseudomonas aeruginosa model
Cited by: 68
Author(s): Camilo Barbosa, Robert Beardmore, Hinrich Schulenburg, Gunther Jansen
Software Mentions: 5
Published: about 6 years ago

10.3390/insects11110811

Search for Alternative Control Strategies of Drosophila suzukii (Diptera: Drosophilidae): Laboratory Assays Using Volatile Natural Plant Compounds
Cited by: 7
Author(s): Astrid Eben, Frank Sporer, Heidrun Vogt, Bernhard Wetterauer, Michael Wink
Software Mentions: 5
Published: over 3 years ago

10.3389/fcimb.2018.00043

High-Throughput Quantification of Bacterial-Cell Interactions Using Virtual Colony Counts
Cited by: 10
Author(s): Stefanie Hoffmann, Steffi Walter, Anne-Kathrin Blume, Stephan Fuchs, Christiane Schmidt, Annemarie Scholz, Roman G. Gerlach
Software Mentions: 5
Published: over 6 years ago

10.1186/s12934-016-0434-6

Key role of lipid management in nitrogen and aroma metabolism in an evolved wine yeast strain
Cited by: 32
Author(s): Stéphanie Rollero, Jean-Roch Mouret, Isabelle Sanchez, Carole Camarasa, Anne Ortiz‐Julien, Jean‐Marie Sablayrolles, Sylvie Dequin
Software Mentions: 4
Published: over 8 years ago

10.3390/ijms20102570

Coupling Genome-wide Transcriptomics and Developmental Toxicity Profiles in Zebrafish to Characterize Polycyclic Aromatic Hydrocarbon (PAH) Hazard
Cited by: 35
Author(s): Prarthana Shankar, Mitra C. Geier, Lisa Truong, Ryan McClure, Paritosh Pande, Katrina M. Waters, Robert L. Tanguay
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijms22115866

LEDGF/p75 Is Required for an Efficient DNA Damage Response
Cited by: 8
Author(s): Victoria Liedtke, Christian Schröder, Dirk Roggenbuck, Romano Weiss, Ralf Stohwasser, Peter Schierack, Stefan Rödiger, Lysann Schenk
Software Mentions: 4
Published: almost 3 years ago

10.7554/eLife.68876

High potency of sequential therapy with only β-lactam antibiotics
Cited by: 24
Author(s): Aditi Batra, Roderich Roemhild, Emilie Rousseau, Sören Franzenburg, Stefan Niemann, Hinrich Schulenburg
Software Mentions: 4
Published: almost 3 years ago

10.7554/eLife.32581

Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids
Cited by: 14
Author(s): Sara C. Di Rienzi, Juliet Jacobson, Elizabeth A. Kennedy, Michael Bell, Qiaojuan Shi, Jillian L. Waters, Peter Lawrence, J. Thomas Brenna, Robert A. Britton, Jens Walter, Ruth E. Ley
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.3766

The Plasmodium berghei RC strain is highly diverged and harbors putatively novel drug resistance variants
Cited by: 0
Author(s): Warangkhana Songsungthong, Supasak Kulawonganunchai, Alisa Wilantho, Sissades Tongsima, Pongpisid Koonyosying, Chairat Uthaipibull, Sumalee Kamchonwongpaisan, Philip Shaw
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.6713

Validation ofPlasmodium falciparumdeoxyhypusine synthase as an antimalarial target
Cited by: 7
Author(s): Aiyada Aroonsri, Navaporn Posayapisit, Jindaporn Kongsee, Onsiri Siripan, Danoo Vitsupakorn, Sugunya Utaida, Chairat Uthaipibull, Sumalee Kamchonwongpaisan, Philip Shaw
Software Mentions: 4
Published: about 5 years ago

10.1186/s12936-015-0885-y

Bio-efficacy of new long-lasting insecticide-treated bed nets against Anopheles funestus and Anopheles gambiae from central and northern Mozambique
Cited by: 25
Author(s): Ana Paula Abílio, Pelágio Marrune, Nilsa de Deus, Francisco Mbofana, Pedro Muianga, Ayubo Kampango
Software Mentions: 4
Published: over 8 years ago

10.1038/s41396-020-00859-w

Mapping the adaptive landscape of a major agricultural pathogen reveals evolutionary constraints across heterogeneous environments
Cited by: 18
Author(s): Anik Dutta, Fanny E. Hartmann, C. L. Francisco, Bruce A. McDonald, Daniel Croll
Software Mentions: 4
Published: over 3 years ago

10.1128/mBio.02317-16

Plasmodium falciparum Maf1 Confers Survival upon Amino Acid Starvation
Cited by: 26
Author(s): Kyle Jarrod McLean, Marcelo Jacobs‐Lorena
Software Mentions: 4
Published: about 7 years ago

10.1126/scitranslmed.abf1906

The neutralizing antibody, LY-CoV555, protects against SARS-CoV-2 infection in nonhuman primates
Cited by: 314
Author(s): Bryan E. Jones, Patricia Brown‐Augsburger, Kizzmekia S. Corbett, Kathryn Westendorf, Julian Davies, Thomas P. Cujec, Christopher M. Wiethoff, Jamie L. Blackbourne, Beverly A. Heinz, Denisa Foster, Richard E. Higgs, Deepa Balasubramaniam, Lingshu Wang, Yi Zhang, Eun Sung Yang, Roza Bidshahri, Lucas Kraft, Yuri Hwang, Stefanie Žentelis, Kevin Jepson, Rodrigo Goya, Maia A. Smith, David W. Collins, Samuel J. H. Hinshaw, Sean A. Tycho, Davide Pellacani, Ping Xiang, Krithika Muthuraman, Solmaz Sobhanifar, Marissa H. Piper, Franz J Triana, J. Hendle, Anna Pustilnik, Andrew C. Adams, Shawn J. Berens, Ralph S. Baric, David R. Martinez, Robert W. Cross, Thomas W. Geisbert, Viktoriya Borisevich, Olubukola M. Abiona, Hayley M. Belli, Maren de Vries, Adil Mohamed, Meike Dittmann, Marie I. Samanovic, Mark J. Mulligan, Jory A. Goldsmith, Ching Lin Hsieh, Nicole V. Johnson, Daniel Wrapp, Jason S. McLellan, Bryan C. Barnhart, Barney S. Graham, John R. Mascola, Carl L. Hansen, Ester Falconer
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0085057

Analysis of the Diversity of Substrate Utilisation of Soil Bacteria Exposed to Cd and Earthworm Activity Using Generalised Additive Models
Cited by: 46
Author(s): Selene Muñiz, Juan Lacarta, María P. Pata, Juan J. Jiménez, Enrique Navarro
Software Mentions: 4
Published: over 10 years ago

10.3389/fmicb.2017.00902

The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment
Cited by: 77
Author(s): Sandra Granzow, Kristin Kaiser, Bernd Wemheuer, Birgit Pfeiffer, Rolf Daniel, Stefan Vidal, Franziska Wemheuer
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSystems.00268-20

Impact of Glyphosate on the Honey Bee Gut Microbiota: Effects of Intensity, Duration, and Timing of Exposure
Cited by: 49
Author(s): Erick V. S. Motta, Nancy A. Moran
Software Mentions: 4
Published: over 3 years ago

10.3390/pathogens10080980

In Vitro Testing of Alternative Synthetic and Natural Antiparasitic Compounds against the Monogenean Sparicotyle chrysophrii
Cited by: 9
Author(s): Ivona Mladineo, Željka Trumbić, Adrián Ormad-García, Oswaldo Palenzuela, Ariadna Sitjà‐Bobadilla, Simona Manuguerra, Cristóbal Espinosa, Concetta María Messina
Software Mentions: 4
Published: almost 3 years ago

10.1371/journal.pone.0237288

First evidence for an aposematic function of a very common color pattern in small insects
Cited by: 0
Author(s): Rebeca Mora-Castro, Marcela Alfaro-Córdoba, Marcela Hernández-Jiménez, Mauricio Fernández Otárola, Michael Méndez-Rivera, Didier Ramírez-Morales, Carlos E. Rodríguez-Rodríguez, Andrés Durán-Rodríguez, Paul Hanson
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2019.00790

ANLN and KDR Are Jointly Prognostic of Breast Cancer Survival and Can Be Modulated for Triple Negative Breast Cancer Control
Cited by: 13
Author(s): Xiaofeng Dai, Yi Man, Xiao Chen, Dongyan Cai
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0241889

Comparative genome analysis of test algal strain NIVA-CHL1 (Raphidocelis subcapitata) maintained in microalgal culture collections worldwide
Cited by: 2
Author(s): Takahiro Yamagishi, Haruyo Yamaguchi, Shigekatsu Suzuki, Mayumi Yoshikawa, Ian Jameson, Maike Lorenz, David R. Nobles, Christine Campbell, Masanori Seki, Masanobu Kawachi, Hiroshi Yamamoto
Software Mentions: 4
Published: over 3 years ago

10.1002/evl3.65

Decomposing parasite fitness reveals the basis of specialization in a two-host, two-parasite system
Cited by: 19
Author(s): Eva J.P. Lievens, Julie Perreau, Philip Agnew, Yannis Michalakis, Thomas Lenormand
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-70026-w

Synergistic drug combinations and machine learning for drug repurposing in chordoma
Cited by: 25
Author(s): Edward E. Anderson, Tammy M. Havener, Kimberley M. Zorn, Daniel H. Foil, Thomas R. Lane, Stephen J. Capuzzi, D. F. C. Morris, Anthony Hickey, David H. Drewry, Sean Ekins
Software Mentions: 4
Published: almost 4 years ago

10.1002/ece3.2794

Synergistic effects of floral phytochemicals against a bumble bee parasite
Cited by: 46
Author(s): Evan C. Palmer‐Young, Ben M. Sadd, Rebecca E. Irwin, Lynn S. Adler
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0013169

Gene Expression Signature-Based Screening Identifies New Broadly Effective Influenza A Antivirals
Cited by: 58
Author(s): Laurence Josset, Julien Textoris, Béatrice Loriod, Olivier Ferraris, Vincent Moulès, Bruno Lina, Catherine Nguyen, Jean‐Jacques Diaz, Manuel Rosa‐Calatrava
Software Mentions: 4
Published: over 13 years ago

10.1038/s41598-020-57840-y

Assessment of malathion toxicity on cytophysiological activity, DNA damage and antioxidant enzymes in root of Allium cepa model
Cited by: 39
Author(s): Akhileshwar Kumar Srivastava, Divya Singh
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0141194

Analysis of the Optimal Duration of Behavioral Observations Based on an Automated Continuous Monitoring System in Tree Swallows (Tachycineta bicolor): Is One Hour Good Enough?
Cited by: 27
Author(s): Ádám Z. Lendvai, Çağlar Akçay, Jenny Q. Ouyang, Roslyn Dakin, Alice D. Domalik, Prianka S St John, Mark T. Stanback, Ignacio T. Moore, Frances Bonier
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-71804-2

Genetic variation regulates opioid-induced respiratory depression in mice
Cited by: 18
Author(s): Jason A. Bubier, Hao He, Vivek Philip, Tyler A Roy, Christian Monroy Hernandez, Rebecca Bernat, Kevin D. Donohue, Bruce F. O’Hara, Elissa J. Chesler
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0208641

Use of a sequential high throughput screening assay to identify novel inhibitors of the eukaryotic SRP-Sec61 targeting/translocation pathway
Cited by: 5
Author(s): W. Klein, Claudia Rutz, Jamina Eckhard, Becky Provinciael, Edgar Specker, Martin Neuenschwander, Gunnar Kleinau, Patrick Scheerer, Jens-Peter von Kries, Marc Nazaré, Kurt Vermeire, Ralf Schülein
Software Mentions: 4
Published: over 5 years ago

10.1038/sdata.2015.6

Allometry and growth of eight tree taxa in United Kingdom woodlands
Cited by: 11
Author(s): Matthew R. Evans, Aristides Moustakas, Gregory Carey, Yadvinder Malhi, Nathalie Butt, Sue Benham, D. Pallett, Stefanie Schäfer
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-017-02810-0

Cumulative impacts: thermally bleached corals have reduced capacity to clear deposited sediment
Cited by: 29
Author(s): Pia Bessell-Browne, Andrew P. Negri, Rebecca Fisher, Peta L. Clode, Ross Jones
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12874-016-0173-8

Modeling the oxygen uptake kinetics during exercise testing of patients with chronic obstructive pulmonary diseases using nonlinear mixed models
Cited by: 10
Author(s): Florent Baty, Christian Ritz, Arnoldus van Gestel, Martin Brutsche, Daniel Gerhard
Software Mentions: 4
Published: almost 8 years ago

10.1186/s13568-021-01250-4

Diversity and metagenome analysis of a hydrocarbon-degrading bacterial consortium from asphalt lakes located in Wietze, Germany
Cited by: 17
Author(s): Michael O. Eze, Grant C. Hose, Simon C. George, Rolf Daniel
Software Mentions: 4
Published: almost 3 years ago

10.1371/journal.ppat.1009340

Mitochondrial morphodynamics alteration induced by influenza virus infection as a new antiviral strategy
Cited by: 18
Author(s): Irene Pila-Castellanos, Diana Molino, Joe McKellar, Laetitia Linès, Juliane Da Graça, Marine Tauziet, Laurent Chanteloup, Ivan Mikaélian, Laurène Meyniel-Schicklin, Patrice Codogno, Jacky Vonderscher, Cédric Delevoye, Olivier Moncorgé, Eric Meldrum, Caroline Goujon, Étienne Morel, Benoı̂t de Chassey
Software Mentions: 4
Published: over 3 years ago

10.1007/s00204-018-2178-z

Dynamic imaging of adaptive stress response pathway activation for prediction of drug induced liver injury
Cited by: 45
Author(s): Steven Wink, Steven Hiemstra, Suzanna Huppelschoten, Janna E. Klip, Bob van de Water
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2017.01641

Enhanced Killing and Antibiofilm Activity of Encapsulated Cinnamaldehyde against Candida albicans
Cited by: 57
Author(s): Shahper N. Khan, Shakir Khan, Jawaid Iqbal, Rosina Khan, Asad Khan
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.ppat.1009659

Sickle-trait hemoglobin reduces adhesion to both CD36 and EPCR by Plasmodium falciparum-infected erythrocytes
Cited by: 5
Author(s): Jens E. V. Petersen, Joseph W. Saelens, Elizabeth Freedman, Louise Turner, Thomas Lavstsen, Rick M. Fairhurst, Mahamadou Diakité, Steve M. Taylor
Software Mentions: 4
Published: almost 3 years ago

10.3389/fpls.2018.00060

Inheritance of Mesotrione Resistance in an Amaranthus tuberculatus (var. rudis) Population from Nebraska, USA
Cited by: 22
Author(s): Maxwel C. Oliveira, Todd A. Gaines, Amit J. Jhala, Stevan Z. Knežević
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2021.652581

Mechanism of Resistance to S-metolachlor in Palmer amaranth
Cited by: 13
Author(s): Gulab Rangani, Matheus M. Noguera, Reiofeli Salas-Perez, Lariza Benedetti, Nilda Roma‐Burgos
Software Mentions: 3
Published: about 3 years ago

Projects: pypi: drc

Papers Mentioning drc 291