pypi: FAST | Projects | Ecosyste.ms: Papers

10.3389/fninf.2020.572068

Rxnat: An Open-Source R Package for XNAT-Based Repositories
Cited by: 0
Author(s): Adrian Gherman, John Muschelli, Brian Caffo, Ciprian M. Crainiceanu
Software Mentions: 13
Published: over 3 years ago

10.1371/journal.pcbi.1009136

Multidimensional analysis and detection of informative features in human brain white matter
Cited by: 14
Author(s): Adam Richie-Halford, Jason D. Yeatman, Noah Simon, Ariel Rokem
Software Mentions: 12
Published: almost 3 years ago

10.1007/s11214-018-0576-4

The Space Physics Environment Data Analysis System (SPEDAS)
Cited by: 295
Author(s): V. Angelopoulos, P. Cruce, Alexander Drozdov, E. W. Grimes, Nick Hatzigeorgiu, David A. King, D. E. Larson, James W. Lewis, J. M. McTiernan, D. A. Roberts, Chuck Russell, Tomoaki Hori, Yoshiya Kasahara, Atsushi Kumamoto, A. Matsuoka, Yukinaga Miyashita, Yoshizumi Miyoshi, I. Shinohara, Masaaki Teramoto, J. Faden, A. J. Halford, Michael McCarthy, R. M. Millan, J. G. Sample, David M. Smith, L. A. Woodger, A. Masson, Ayris Narock, Kazushi Asamura, T. F. Chang, Che‐Ming Chiang, Y. Kazama, K. Keika, Shoya Matsuda, Takehiko Segawa, K. Seki, Shoji Motomizu, Sunny Wing-Yee Tam, Norio Umemura, B. J. Wang, S. Y. Wang, R. J. Redmon, J. V. Rodriguez, H. J. Singer, J. D. Vandegriff, Shuji Abe, M. Nosé, Atsuki Shinbori, Yoshimasa Tanaka, S. Ueno, L. Andersson, P. Dunn, Christopher Fowler, J. S. Halekas, Takuya Hara, Yuki Harada, C. O. Lee, R. J. Lillis, D. L. Mitchell, M. R. Argall, K. R. Bromund, J. L. Burch, I. J. Cohen, Michael Galloy, B. L. Giles, A. N. Jaynes, O. Le Contel, M. Oka, T. D. Phan, Brian M. Walsh, J. H. Westlake, F. D. Wilder, S. D. Bale, R. Livi, M. Pulupa, P. L. Whittlesey, A. W. DeWolfe, B. Harter, Edson Mello Lucas, U. Auster, J. W. Bonnell, C. M. Cully, E. Donovan, R. E. Ergun, H. U. Frey, B. J. Jackel, A. Keiling, H. Korth, J. P. McFadden, Yoshihiro Nishimura, Ferdinand Plaschke, P. Robert, D. L. Turner, J. M. Weygand, R. M. Candey, Russell D. Johnson, T. J. Kovalick, M. H. Liu, R. E. McGuire, A. W. Breneman, K. Kersten, P. Schroeder
Software Mentions: 11
Published: over 5 years ago

10.3390/diagnostics11071137

A Novel Combination of Blood Biomarkers and Clinical Stroke Scales Facilitates Detection of Large Vessel Occlusion Ischemic Strokes
Cited by: 6
Author(s): Edoardo Gaude, Barbara Nogueira, Marcos Ladreda Mochales, Sheila V. Graham, Sarah Smith, Lisa Shaw, Sara Graziadio, Gonzalo Ladreda Mochales, Philip Sloan, Joshua D. Bernstock, Shashank Shekhar, Toby Gropen, Chris Price
Software Mentions: 10
Published: almost 3 years ago

10.1002/hbm.25161

Longitudinal functional brain network reconfiguration in healthy aging
Cited by: 27
Author(s): Brigitta Malagurski, Franziskus Liem, Jessica Oschwald, Susan Mérillat, Lutz Jäncke
Software Mentions: 10
Published: over 3 years ago

10.1038/s41598-021-98889-7

Productive visualization of high-throughput sequencing data using the SeqCode open portable platform
Cited by: 7
Author(s): Enrique Blanco, Mar González-Ramírez, Luciano Di Croce
Software Mentions: 8
Published: over 2 years ago

10.3389/fgene.2015.00172

FAST: FAST Analysis of Sequences Toolbox
Cited by: 28
Author(s): Travis J Lawrence, Kyle T. Kauffman, Katherine C. H. Amrine, Dana L. Carper, Raymond S. Lee, Peter J. Becich, Claudia J. Canales, David H. Ardell
Software Mentions: 8
Published: about 9 years ago

10.1186/s12859-018-2074-9

BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines
Cited by: 11
Author(s): Yözen Hernández, Rocky Bernstein, Pedro Pagan, Levy C. Vargas, William D. McCaig, Girish Ramrattan, Saymon Akther, Amanda M. Larracuente, Lia Di, Filipe Garrett Vieira, Wang Qiu
Software Mentions: 7
Published: about 6 years ago

10.3390/s21134510

A Comprehensive Overview of TCP Congestion Control in 5G Networks: Research Challenges and Future Perspectives
Cited by: 13
Author(s): Josip Lörincz, Zvonimir Klarin, Julije Ožegović
Software Mentions: 6
Published: almost 3 years ago

10.1038/sdata.2017.35

A geographically-diverse collection of 418 human gut microbiome pathway genome databases
Cited by: 6
Author(s): Aria S. Hahn, Tomer Altman, Kishori M. Konwar, Niels W. Hanson, Dongjae Kim, David A. Relman, David L. Dill, Steven J. Hallam
Software Mentions: 6
Published: about 7 years ago

10.1186/1471-2105-8-314

A comprehensive system for evaluation of remote sequence similarity detection
Cited by: 21
Author(s): Yuanyuan Qi, Ruslan I. Sadreyev, Yong Wang, Bong-Hyun Kim, Nick V. Grishin
Software Mentions: 6
Published: over 16 years ago

10.1016/j.cub.2020.05.007

The Evolution of Mass Cell Suicide in Bacterial Warfare
Cited by: 30
Author(s): Elisa T. Granato, Kevin R. Foster
Software Mentions: 6
Published: almost 4 years ago

10.1002/hbm.24568

Comparing MRI metrics to quantify white matter microstructural damage in multiple sclerosis
Cited by: 29
Author(s): Ilona Lipp, Derek K. Jones, Sonya Bells, Eleonora Sgarlata, Catherine Foster, Rachael Stickland, Alison E. Davidson, Emma Tallantyre, Neil Robertson, Richard G. Wise, Valentina Tomassini
Software Mentions: 5
Published: about 5 years ago

10.1128/mSystems.01306-20

Cultivating the Bacterial Microbiota of Populus Roots
Cited by: 12
Author(s): Dana L. Carper, David J. Weston, Aditya Barde, Collin M. Timm, Tse-Yuan S. Lu, Leah H. Burdick, Sara Jawdy, Dawn M. Klingeman, Michael S. Robeson, Allison M. Veach, Melissa Cregger, Udaya C. Kalluri, Christopher W. Schadt, Mircea Podar, Mitchel J. Doktycz, Dale A. Pelletier
Software Mentions: 5
Published: almost 3 years ago

10.1371/journal.pone.0104947

Voxel-Wise Motion Artifacts in Population-Level Whole-Brain Connectivity Analysis of Resting-State fMRI
Cited by: 22
Author(s): Tamás Spisák, András Jakab, Sándor Attila Kis, Gábor Opposits, Csaba Aranyi, Ervin Berényi, Miklós Emri
Software Mentions: 5
Published: over 9 years ago

10.7554/eLife.35854

GABA, not BOLD, reveals dissociable learning-dependent plasticity mechanisms in the human brain
Cited by: 36
Author(s): Polytimi Frangou, Marta Correia, Zoe Kourtzi
Software Mentions: 5
Published: over 5 years ago

10.3390/s21175764

D-OLIA: A Hybrid MPTCP Congestion Control Algorithm with Network Delay Estimation
Cited by: 6
Author(s): Tabassum Lubna, Imtiaz Mahmud, Geon-Hwan Kim, You-Ze Cho
Software Mentions: 5
Published: over 2 years ago

10.1186/s40168-018-0458-8

Fecal Aliquot Straw Technique (FAST) allows for easy and reproducible subsampling: assessing interpersonal variation in trimethylamine-N-oxide (TMAO) accumulation
Cited by: 16
Author(s): Kymberleigh A. Romano, Kimberly A. Dill‐McFarland, Kazuyuki Kasahara, Robert L. Kerby, Eugenio I. Vivas, Daniel Amador‐Noguez, Pamela Herd, Federico E. Rey
Software Mentions: 5
Published: about 6 years ago

10.3389/fninf.2014.00024

BROCCOLI: Software for fast fMRI analysis on many-core CPUs and GPUs
Cited by: 67
Author(s): Anders Eklund, Paul Dufort, Mattias Villani, Stephen M. LaConte
Software Mentions: 5
Published: about 10 years ago

10.2196/15293

Detection of Suicidality Among Opioid Users on Reddit: Machine Learning–Based Approach
Cited by: 24
Author(s): Hannah Yao, Sina Rashidian, Xinyu Dong, Hongyi Duanmu, Richard N. Rosenthal, Fusheng Wang
Software Mentions: 5
Published: over 3 years ago

10.1093/gigascience/giy016

Boutiques: a flexible framework to integrate command-line applications in computing platforms
Cited by: 33
Author(s): Tristan Glatard, Gregory Kiar, Tristan Aumentado-Armstrong, Natacha Beck, Pierre Bellec, R. Bernard, Axel Bonnet, Shawn T. Brown, Sorina Camarasu-Pop, Frédéric Cervenansky, Samir Das, Rafael Ferreira da Silva, Guillaume Flandin, Pascal Girard, Krzysztof J. Gorgolewski, Charles R.G. Guttmann, Valérie Hayot‐Sasson, Pierre-Olivier Quirion, Pierre Rioux, Marc-Étienne Rousseau, Alan C. Evans
Software Mentions: 5
Published: about 6 years ago

10.1002/brb3.1941

Physical activity and aerobic fitness in relation to local and interhemispheric functional connectivity in adolescents’ brains
Cited by: 5
Author(s): Ilona Ruotsalainen, Enrico Glerean, Juha Karvanen, Tetiana Gorbach, Ville Renvall, Heidi Syväoja, Tuija Tammelin, Tiina Parviainen
Software Mentions: 4
Published: over 3 years ago

10.7150/thno.40650

A mouse model of MSU-induced acute inflammation in vivo suggests imiquimod-dependent targeting of Il-1β as relevant therapy for gout patients
Cited by: 26
Author(s): Alexandre Mariotte, Aurore De Cauwer, Chrystelle Po, Cherine Abou-Fayçal, Angélique Pichot, Nicodème Paul, Ismael Aouadi, Raphaël Carapito, Benoı̂t Frisch, Cécile Macquin, Emmanuel Chatelus, Jean Sibilia, Jean‐Paul Armspach, Seiamak Bahram, Philippe Georgel
Software Mentions: 4
Published: over 4 years ago

10.7554/eLife.40292

Is it possible to reconstruct an accurate cell lineage using CRISPR recorders?
Cited by: 62
Author(s): Irepan Salvador-Martínez, Marco Grillo, Michalis Averof, Maximilian J. Telford
Software Mentions: 4
Published: over 5 years ago

10.3390/s21061945

A Straightforward and Efficient Instance-Aware Curved Text Detector
Cited by: 2
Author(s): Fan Zhao, Sidi Shao, Lin Zhang, Zhiquan Wen
Software Mentions: 4
Published: about 3 years ago

10.1038/s41598-020-75326-9

Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress
Cited by: 33
Author(s): Meltem Weger, Daniel Alpern, Antoine Cherix, Sriparna Ghosal, Jocelyn Grosse, Julie Russeil, Rolf Gruetter, E. R. de Kloet, Bart Deplancke, Carmen Sandi
Software Mentions: 4
Published: over 3 years ago

10.15252/msb.20209593

DOMINO: a network‐based active module identification algorithm with reduced rate of false calls
Cited by: 35
Author(s): Hagai Levi, Ran Elkon, Ron Shamir
Software Mentions: 4
Published: over 3 years ago

10.1155/2018/2046269

Instant Feedback Rapid Prototyping for GPU-Accelerated Computation, Manipulation, and Visualization of Multidimensional Data
Cited by: 1
Author(s): Maximilian Malek, Christoph Wilhelm Sensen
Software Mentions: 4
Published: almost 6 years ago

10.1111/tpj.14179

Computational aspects underlying genome to phenome analysis in plants
Cited by: 47
Author(s): Anthony Bolger, Hendrik Poorter, Kathryn Dumschott, Marie E. Bolger, Daniel Arend, Sonia Osorio, Heidrun Gundlach, Klaus Mayer, Matthias Lange, Uwe Scholz, Björn Usadel
Software Mentions: 4
Published: over 5 years ago

10.1590/1678-4685-GMB-2017-0164

Identification of potential target genes of USP22 via ChIP-seq and RNA-seq analysis in HeLa cells
Cited by: 5
Author(s): Zhizhong Gong, Jianyun Liu, Xin Xie, Xiaoyuan Xu, Ping Wu, Huimin Li, Yaqin Wang, Weidong Li, Jianjun Xiong
Software Mentions: 4
Published: almost 6 years ago

10.3389/fped.2017.00159

Resting-State Functional Connectivity in the Infant Brain: Methods, Pitfalls, and Potentiality
Cited by: 30
Author(s): Chandler R. L. Mongerson, Russell W. Jennings, David Borsook, Lino Becerra, Dusica Bajic
Software Mentions: 4
Published: almost 7 years ago

10.12688/f1000research.10783.2

A very simple, re-executable neuroimaging publication
Cited by: 10
Author(s): Samik Ghosh, Jean‐Baptiste Poline, David B. Keator, Yaroslav O. Halchenko, Adrian L. R. Thomas, Daniel Kessler, David N. Kennedy
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0255030

ReVisE: Remote visualization environment for large numerical simulation datasets
Cited by: 0
Author(s): Stepan Orlov, Aleksey Kuzin, Alexey Zhuravlev, Vyacheslav Reshetnikov, Egor Usik, Vladislav Kiev, Andrey Pyatlin
Software Mentions: 4
Published: almost 3 years ago

10.1177/1362361320969258

Difference in default mode network subsystems in autism across childhood and adolescence
Cited by: 12
Author(s): Joe Bathelt, Hilde M. Geurts
Software Mentions: 4
Published: over 3 years ago

10.12688/f1000research.11964.2

Preprocessed Consortium for Neuropsychiatric Phenomics dataset
Cited by: 25
Author(s): Krzysztof J. Gorgolewski, Joke Durnez, Russell A. Poldrack
Software Mentions: 4
Published: over 6 years ago

10.3389/fnins.2018.00869

Imbalance of Functional Connectivity and Temporal Entropy in Resting-State Networks in Autism Spectrum Disorder: A Machine Learning Approach
Cited by: 11
Author(s): Robert X. Smith, Kay Jann, Mirella Dapretto, Danny J.J. Wang
Software Mentions: 4
Published: over 5 years ago

10.1186/gb-2008-9-1-r11

CPSARST: an efficient circular permutation search tool applied to the detection of novel protein structural relationships
Cited by: 36
Author(s): Wei-Cheng Lo, Ping Lyu
Software Mentions: 4
Published: over 16 years ago

10.1186/1471-2105-10-210

Iterative refinement of structure-based sequence alignments by Seed Extension
Cited by: 11
Author(s): Changhoon Kim, Chin‐Hsien Tai, Byung Kook Lee
Software Mentions: 3
Published: almost 15 years ago

10.1186/1471-2105-13-256

A scalable method for identifying frequent subtrees in sets of large phylogenetic trees
Cited by: 5
Author(s): Avinash Ramu, Tamer Kahveci, J. Gordon Burleigh
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2105-8-307

Protein structural similarity search by Ramachandran codes
Cited by: 45
Author(s): Wei-Cheng Lo, Po-Jung Huang, Chih Hung Chang, Ping Lyu
Software Mentions: 3
Published: over 16 years ago

10.1186/1471-2105-8-416

ProCKSI: a decision support system for Protein (Structure) Comparison, Knowledge, Similarity and Information
Cited by: 54
Author(s): Daniel Barthel, Jonathan D. Hirst, Jacek Błażewicz, Edmund K. Burke, Natalio Krasnogor
Software Mentions: 3
Published: over 16 years ago

10.6028/jres.101.075

Conference Report: COMPASS '96 - The Eleventh Annual Conference on Computer Assurance, Gaithersburg, MD - June 17-21, 1996
Cited by: 0
Author(s): Karen Ferraiolo, Lucio Ippolito
Software Mentions: 3
Published: over 27 years ago

10.1186/s40246-019-0220-8

Next-generation sequencing in liquid biopsy: cancer screening and early detection
Cited by: 262
Author(s): M Chen, Hongyu Zhao
Software Mentions: 3
Published: almost 5 years ago

10.1007/s00415-016-8170-8

Screening tests for aphasia in patients with stroke: a systematic review
Cited by: 66
Author(s): Hanane El Hachioui, Evy Visch-Brink, Lonneke M. L. de Lau, Mieke W. M. E. van de Sandt-Koenderman, Femke Nouwens, Peter J. Koudstaal, Diederik W.J. Dippel
Software Mentions: 3
Published: almost 8 years ago

10.7554/eLife.21749

The cortical connectivity of the periaqueductal gray and the conditioned response to the threat of breathlessness
Cited by: 59
Author(s): Olivia K. Faull, Kyle T.S. Pattinson
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0050169

Pain Facilitation Brain Regions Activated by Nalbuphine Are Revealed by Pharmacological fMRI
Cited by: 23
Author(s): Robert W. Gear, Lino Becerra, Jaymin Upadhyay, James Bishop, Diana Wallin, Gautam Pendse, Jon D. Levine, David Borsook
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0217118

Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation
Cited by: 64
Author(s): José M. Guerrero, Nagesh Adluru, Barbara B. Bendlin, H. Hill Goldsmith, Stacey M. Schaefer, Richard J. Davidson, Steven Kecskemeti, Hui Zhang, Andrew L. Alexander
Software Mentions: 3
Published: over 4 years ago

10.1523/JNEUROSCI.0870-20.2021

Viewing ambiguous social interactions increases functional connectivity between frontal and temporal nodes of the social brain
Cited by: 12
Author(s): Matthew Ainsworth, Jérôme Sallet, Olivier Joly, Diana Kyriazis, Nikolaus Kriegeskorte, John Duncan, Urs Schüffelgen, Matthew Rushworth, Andrew Bell
Software Mentions: 3
Published: almost 3 years ago

10.7554/eLife.34354

Macro-connectomics and microstructure predict dynamic plasticity patterns in the non-human primate brain
Cited by: 22
Author(s): Seán Froudist-Walsh, Philip J. Browning, James J. Young, Kathy Murphy, Rogier B. Mars, Lazar Fleysher, Paula L. Croxson
Software Mentions: 3
Published: over 5 years ago

10.3390/s21165435

An Indoor Navigation Methodology for Mobile Devices by Integrating Augmented Reality and Semantic Web
Cited by: 5
Author(s): Jesús Iván Rubio-Sandoval, José-Lázaro Martínez-Rodríguez, Iván López-Arévalo, Ana B. Ríos-Alvarado, Adolfo Josué Rodríguez-Rodríguez, David Tomás Vargas-Requena
Software Mentions: 3
Published: almost 3 years ago

10.1371/journal.pone.0161036

The Relationship between Gray Matter Quantitative MRI and Disability in Secondary Progressive Multiple Sclerosis
Cited by: 10
Author(s): René‐Maxime Gracien, Alina Jurcoane, Marlies Wagner, Sandra Reitz, Christoph Mayer, Steffen Volz, Stephanie‐Michelle Hof, Vinzenz Fleischer, Amgad Droby, Helmuth Steinmetz, Frauke Zipp, Elke Hattingen, Ralf Deichmann, Johannes Klein
Software Mentions: 3
Published: almost 8 years ago

10.1113/JP276887

Blood–brain barrier permeability measured using dynamic contrast‐enhanced magnetic resonance imaging: a validation study
Cited by: 38
Author(s): Aravinthan Varatharaj, Maria Liljeroth, Angela Darekar, Henrik Larsson, Ian Galea, Stig P. Cramer
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0033096

Classification and Lateralization of Temporal Lobe Epilepsies with and without Hippocampal Atrophy Based on Whole-Brain Automatic MRI Segmentation
Cited by: 59
Author(s): Shiva Keihaninejad, Rolf A. Heckemann, Ioannis S. Gousias, Joseph V. Hajnal, John S. Duncan, Paul Aljabar, Daniel Rueckert, Alexander Hammers
Software Mentions: 3
Published: about 12 years ago

10.3390/s20185109

A New Roadway Eventual Obstacle Detection System Based on Computer Vision
Cited by: 0
Author(s): Mariano González-de-Soto, Rocío Mora, José Antonio Martín-Jiménez, Diego González Aguilera
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-017-1468-4

AVC: Selecting discriminative features on basis of AUC by maximizing variable complementarity
Cited by: 10
Author(s): Lei Sun, Jun Wang, Jinmao Wei
Software Mentions: 3
Published: about 7 years ago

10.3390/s21082793

A Brief Review of Multipath TCP for Vehicular Networks
Cited by: 15
Author(s): Luomeng Chao, Celimuge Wu, Tsutomu Yoshinaga, Wugedele Bao, Yusheng Ji
Software Mentions: 3
Published: about 3 years ago

10.7150/thno.44693

A lab-on-a-disc platform enables serial monitoring of individual CTCs associated with tumor progression during EGFR-targeted therapy for patients with NSCLC
Cited by: 16
Author(s): Minji Lim, Juhee Park, Alarice Lowe, Hyoung-oh Jeong, Semin Lee, Hee Chul Park, Kyusang Lee, Gwang Ha Kim, Mi‐Hyun Kim, Yoon‐Kyoung Cho
Software Mentions: 3
Published: over 4 years ago

10.1038/s41597-019-0129-z

A macaque connectome for large-scale network simulations in TheVirtualBrain
Cited by: 51
Author(s): Kelly Shen, Gleb Bezgin, Michael Schirner, Petra Ritter, Stefan Everling, Anthony R. McIntosh
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0078811

Examination of Cognitive Fatigue in Multiple Sclerosis using Functional Magnetic Resonance Imaging and Diffusion Tensor Imaging
Cited by: 119
Author(s): Helen M. Genova, Venkateswaran Rajagopalan, John DeLuca, Abhijit Das, Allison Binder, Aparna Arjunan, Nancy Chiaravalloti, Glenn R. Wylie
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-018-37086-5

Flax latitudinal adaptation at LuTFL1 altered architecture and promoted fiber production
Cited by: 11
Author(s): Rafał M. Gutaker, Maricris Zaidem, Yong‐Bi Fu, Axel Diederichsen, Oliver Smith, Roselyn Ware, Robin G. Allaby
Software Mentions: 3
Published: over 5 years ago

10.3390/jcm10050960

Multiple Allergen Simultaneous Test-Immunoblot Assay for Immunoglobulin E Detection in Patients with Isolated Allergic Conjunctivitis
Cited by: 1
Author(s): Jung Yeob Han, Hun Lee, J. N. Chung, Young Jun Kim, Jae Yong Kim, Hungwon Tchah
Software Mentions: 3
Published: about 3 years ago

10.1186/1471-2105-10-S1-S4

SE: an algorithm for deriving sequence alignment from a pair of superimposed structures
Cited by: 7
Author(s): Chin‐Hsien Tai, James J. Vincent, Changhoon Kim, Byung Kook Lee
Software Mentions: 3
Published: over 15 years ago

10.3390/jcm10143183

Review of Rhinitis: Classification, Types, Pathophysiology
Cited by: 37
Author(s): Georgia A Liva, Alexander D. Karatzanis, E Prokopakis
Software Mentions: 3
Published: almost 3 years ago

10.1038/tp.2016.69

Genome-wide gene-based analysis suggests an association between Neuroligin 1 (NLGN1) and post-traumatic stress disorder
Cited by: 57
Author(s): Varun Kilaru, Subramania Iyer, Lynn M. Almli, Jennifer Stevens, Adriana Lori, Tanja Jovanović, Timothy D. Ely, Bekh Bradley, Elisabeth B. Binder, Nastassja Koen, Dan J. Stein, Karen N. Conneely, Aliza P. Wingo, Alicia K. Smith, Kerry J. Ressler
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpsyt.2019.00502

Oxytocin-Induced Changes in Intrinsic Network Connectivity in Cocaine Use Disorder: Modulation by Gender, Childhood Trauma, and Years of Use
Cited by: 7
Author(s): Jane E. Joseph, Brandon Vaughan, Christopher C. Camp, Nathaniel L. Baker, Brian J. Sherman, Megan Moran-Santa Maria, Aimee L. McRae‐Clark, Kathleen T. Brady
Software Mentions: 3
Published: almost 5 years ago

10.3389/fnins.2020.569517

Dissecting Neuronal Activation on a Brain-Wide Scale With Immediate Early Genes
Cited by: 25
Author(s): Alessandra Franceschini, Irene Costantini, Francesco S. Pavone, Ludovico Silvestri
Software Mentions: 3
Published: over 3 years ago

10.3390/genes12060939

Two RECK Splice Variants (Long and Short) Are Differentially Expressed in Patients with Stable and Unstable Coronary Artery Disease: A Pilot Study
Cited by: 3
Author(s): Chiara Vancheri, Elena Morini, Francesca Romana Prandi, Elie Alkhoury, Roberto Celotto, Francesco Romeo, Giuseppe Novelli, Francesca Amati
Software Mentions: 3
Published: almost 3 years ago

10.3389/fneur.2021.745993

Editorial: Intracranial Bleeding After Reperfusion Therapy in Acute Ischemic Stroke
Cited by: 2
Author(s): Nishant K. Mishra, R. John Leigh, Bruce Campbell
Software Mentions: 3
Published: over 2 years ago

10.1192/pb.bp.114.049734

Alcohol screening for older adults in an acute general hospital: FAST v. MAST-G assessments
Cited by: 7
Author(s): Rachel Knightly, George Tadros, Jaydev Sharma, Peter Duffield, Emma Carnall, Jacqui Fisher, Shaza Salman
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0230259

AVATREE: An open-source computational modelling framework modelling Anatomically Valid Airway TREE conformations
Cited by: 6
Author(s): Stavros Nousias, Evangelia I. Zacharaki, Κωνσταντίνος Μουστάκας
Software Mentions: 3
Published: about 4 years ago

10.3389/fnins.2021.642808

Quantitative Assessment of the Impact of Geometric Distortions and Their Correction on fMRI Data Analyses
Cited by: 4
Author(s): Rodolfo Abreu, João Valente Duarte
Software Mentions: 3
Published: about 3 years ago

10.3389/fnagi.2014.00263

Magnetization Transfer Ratio Relates to Cognitive Impairment in Normal Elderly
Cited by: 31
Author(s): Stephan Seiler, Lukas Pirpamer, Edith Hofer, Marco Duering, Éric Jouvent, Franz Fazekas, Jean‐François Mangin, Hugues Chabriat, Martin Dichgans, Stefan Ropele, Reinhold Schmidt
Software Mentions: 3
Published: over 9 years ago

10.1016/j.physbeh.2020.112923

The effects of an aerobic training intervention on cognition, grey matter volumes and white matter microstructure
Cited by: 13
Author(s): Claire E. Sexton, Jill F. Betts, Andrea Dennis, Aiden Doherty, Paul Leeson, Catherine Holloway, Erica Dall’Armellina, Anderson M. Winkler, Naiara Demnitz, Thomas Wassenaar, Helen Dawes, Heidi Johansen‐Berg
Software Mentions: 3
Published: over 3 years ago

10.3389/fnhum.2021.665319

Functional Brain Connectivity During Narrative Processing Relates to Transportation and Story Influence
Cited by: 3
Author(s): A. Vaccaro, Brandon G. Scott, Sarah I. Gimbel, Jonas Kaplan
Software Mentions: 3
Published: almost 3 years ago

10.1208/s12248-020-00480-x

Considerations and Caveats when Applying Global Sensitivity Analysis Methods to Physiologically Based Pharmacokinetic Models
Cited by: 29
Author(s): Dan Liŭ, Linzhong Li, Amin Rostami‐Hodjegan, Frédéric Bois, Masoud Jamei
Software Mentions: 3
Published: almost 4 years ago

10.3389/fnhum.2017.00628

Motor Imagery as a Function of Disease Severity in Multiple Sclerosis: An fMRI Study
Cited by: 13
Author(s): Andrea Tacchino, Catarina Saiote, Giampaolo Brichetto, Giulia Bommarito, Luca Roccatagliata, Christian Cordano, Mario Alberto Battaglia, Gianluigi Mancardi, Matilde Inglese
Software Mentions: 3
Published: over 6 years ago

10.3390/e23010018

Explainable AI: A Review of Machine Learning Interpretability Methods
Cited by: 702
Author(s): Pantelis Linardatos, Vasilis Papastefanopoulos, Sotiris Kotsiantis
Software Mentions: 3
Published: over 3 years ago

10.3389/fped.2019.00315

Infant Brain Structural MRI Analysis in the Context of Thoracic Non-cardiac Surgery and Critical Care
Cited by: 15
Author(s): Chandler R. L. Mongerson, Sophie L. Wilcox, Stacy M. Goins, Danielle B. Pier, David Zurakowski, Russell W. Jennings, Dusica Bajic
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0058130

Sensitivity to White Matter fMRI Activation Increases with Field Strength
Cited by: 45
Author(s): Erin L. Mazerolle, Jodie R. Gawryluk, Kim Dillen, Steven A. Patterson, Kirk W. Feindel, Steven Beyea, M. Tynan R. Stevens, Aaron J. Newman, Matthias Schmidt, Ryan C.N. D’Arcy
Software Mentions: 3
Published: about 11 years ago

10.1017/S2045796020000566

Minimum clinically important differences for the Functioning Assessment Short Test and a battery of neuropsychological tests in bipolar disorders: results from the FACE-BD cohort
Cited by: 6
Author(s): Paul Roux, Éric Brunet-Gouet, Mickaël Ehrminger, Bruno Aouizerate, V. Aubin, Jean‐Michel Azorin, Frank Bellivier, Thierry Bougerol, P. Courtet, Caroline Dubertret, Jean‐Pierre Kahn, Marion Leboyer, Émilie Olié, Bruno Étain, Christine Passerieux
Software Mentions: 3
Published: over 4 years ago

10.1002/hbm.25147

Spatially coherent and topographically organized pathways of the human globus pallidus
Cited by: 24
Author(s): Salvatore Bertino, Gianpaolo Antonio Basile, Alessia Bramanti, Giuseppe Anastasi, Angelo Quartarone, Demetrio Milardi, Alberto Cacciola
Software Mentions: 3
Published: almost 4 years ago

10.1007/s00429-019-01893-x

Mapping the structural connectivity between the periaqueductal gray and the cerebellum in humans
Cited by: 29
Author(s): Alberto Cacciola, Salvatore Bertino, Gianpaolo Antonio Basile, Debora Di Mauro, Alessandro Calamuneri, Gaetana Chillemi, Antonio Duca, Daniele Bruschetta, Paolo Flace, Angelo Favaloro, Rocco Salvatore Calabrò, Giuseppe Anastasi, Demetrio Milardi
Software Mentions: 3
Published: almost 5 years ago

10.18632/aging.103345

Discovering correlates of age-related decline in a healthy late-midlife male birth cohort
Cited by: 1
Author(s): Kiyana Zarnani, Stephen M. Smith, Fidel Alfaro-Almagro, Birgitte Fagerlund, Martin Lauritzen, Egill Rostrup, Thomas E. Nichols
Software Mentions: 3
Published: over 3 years ago

10.1038/tp.2016.283

White matter changes in microstructure associated with a maladaptive response to stress in rats
Cited by: 23
Author(s): Ricardo Magalhães, Julie Bourgin, Fawzi Boumezbeur, Paulo Marques, Michel Bottlaender, Cyril Poupon, Boucif Djemaï, Édouard Duchesnay, Sébastien Mériaux, Nuno Sousa, Thérèse M. Jay, Arnaud Cachia
Software Mentions: 3
Published: over 7 years ago

10.1038/sdata.2016.110

A phenome-wide examination of neural and cognitive function
Cited by: 241
Author(s): Russell A. Poldrack, Eliza Congdon, William Triplett, Krzysztof J. Gorgolewski, Katherine H. Karlsgodt, Jeanette A. Mumford, Fred W. Sabb, Nelson B. Freimer, Edythe D. London, Tyrone D. Cannon, Robert M. Bilder
Software Mentions: 3
Published: over 7 years ago

10.1186/s13054-015-0909-6

Do alcohol use disorders impact on long term outcomes from intensive care?
Cited by: 23
Author(s): Joanne McPeake, Martin Shaw, Anna O’Neill, Ewan Forrest, Alex Puxty, Tara Quasim, John Kinsella
Software Mentions: 2
Published: over 8 years ago

10.1155/2012/503254

Bedside Ultrasound in Resuscitation and the Rapid Ultrasound in Shock Protocol
Cited by: 97
Author(s): Dina Seif, Phillips Perera, Thomas Mailhot, David C. Riley, Diku Mandavia
Software Mentions: 2
Published: over 12 years ago

10.1002/ana.25371

Neural basis of induced phantom limb pain relief
Cited by: 49
Author(s): Sanne Kikkert, Melvin Mezue, Jacinta O’Shea, David Slater, Heidi Johansen‐Berg, Irene Tracey, Tamar R. Makin
Software Mentions: 2
Published: over 5 years ago

10.1016/j.cortex.2017.05.010

Distinct contributions of the fornix and inferior longitudinal fasciculus to episodic and semantic autobiographical memory
Cited by: 74
Author(s): Carl J. Hodgetts, Mark Postans, Naomi Warne, Alice Varnava, Andrew David Lawrence, Kim S. Graham
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-244X-8-S1-S6

Regional grey matter volumetric changes in forensic schizophrenia patients: an MRI study comparing the brain structure of patients who have seriously and violently offended with that of patients who have not
Cited by: 31
Author(s): Basant K. Puri, Serena Counsell, Nadeem Saeed, Marcelo Bustos, Ian Treasaden, Graeme M. Bydder
Software Mentions: 2
Published: about 16 years ago

10.1093/cercor/bhy109

Sex Differences in the Adult Human Brain: Evidence from 5216 UK Biobank Participants
Cited by: 541
Author(s): Stuart J. Ritchie, Simon R. Cox, Xueyi Shen, Michael Lombardo, Lianne M. Reus, Clara Alloza, Mathew A. Harris, Helen L. Alderson, Stuart Hunter, Emma Neilson, David C. Liewald, Bonnie Auyeung, Heather C. Whalley, Stephen M. Lawrie, Catharine R. Gale, Mark E. Bastin, Andrew M. McIntosh, Ian J. Deary
Software Mentions: 2
Published: about 6 years ago

10.1080/07853890.2021.1890205

Stroke mimics: incidence, aetiology, clinical features and treatment
Cited by: 26
Author(s): Brian Buck, Naveed Akhtar, Anas Alrohimi, Khurshid Khan, Ashfaq Shuaib
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0073614

Brain White Matter Shape Changes in Amyotrophic Lateral Sclerosis (ALS): A Fractal Dimension Study
Cited by: 37
Author(s): Venkateswaran Rajagopalan, Zao Liu, Didier Allexandre, Luduan Zhang, Xiao Feng Wang, Erik P. Pioro, Guang H. Yue
Software Mentions: 2
Published: over 10 years ago

10.1155/2016/1349851

BrainK for Structural Image Processing: Creating Electrical Models of the Human Head
Cited by: 14
Author(s): Kai Li, Xenophon Papademetris, Don M. Tucker
Software Mentions: 2
Published: over 8 years ago

10.1186/1472-684X-11-4

Developing and testing a strategy to enhance a palliative approach and care continuity for people who have dementia: study overview and protocol
Cited by: 4
Author(s): Christine Toye, Andrew Robinson, Moyez Jiwa, Sharon Andrews, Fran McInerney, Barbara Horner, Kristi Holloway, Brigit Stratton
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0225286

Comparison of SMS-EPI and 3D-EPI at 7T in an fMRI localizer study with matched spatiotemporal resolution and homogenized excitation profiles
Cited by: 23
Author(s): Caroline Le Ster, Antonio Moreno, Franck Mauconduit, Vincent Gras, Rüdiger Stirnberg, Benedikt A. Poser, Alexandre Vignaud, Evelyn Eger, Stanislas Dehaene, Florent Meyniel, Nicolas Boulant
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0174932

The impact of inspired oxygen levels on calibrated fMRI measurements of M, OEF and resting CMRO2 using combined hypercapnia and hyperoxia
Cited by: 3
Author(s): Isabelle Lajoie, Felipe B. Tancredi, Richard D. Hoge
Software Mentions: 2
Published: about 7 years ago

10.1186/s12859-019-3235-1

MADOKA: an ultra-fast approach for large-scale protein structure similarity searching
Cited by: 18
Author(s): Lei Deng, Guolun Zhong, Chenzhe Liu, Judong Luo, Hui Liu
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0251296

Launching a saliva-based SARS-CoV-2 surveillance testing program on a university campus
Cited by: 14
Author(s): Alexander J. Ehrenberg, Erica A. Moehle, Cara E. Brook, Andrew H. Doudna Cate, Lea B. Witkowsky, Rohan Sachdeva, Ariana Hirsh, Kerrie Barry, Jennifer Hamilton, Enrique Lin-Shiao, Shana L. McDevitt, Luis E. Valentin-Alvarado, Kaitlyn N. Letourneau, Lauren A. Hunter, Amanda Keller, Kathleen Pestal, Phillip A. Frankino, Andrew Murley, Divya Nandakumar, Elizabeth C. Stahl, Connor A. Tsuchida, Holly K. Gildea, Andrew G. Murdock, Megan L. Hochstrasser, Elizabeth O’Brien, Alison Ciling, Alexandra Tsitsiklis, Kurtresha Worden, Claire Dugast-Darzacq, Stephanie G. Hays, Colin Barber, Riley McGarrigle, Emily Kai Yee Lam, David C. Ensminger, Lucie Bardet, Carolyn Sherry, Anna Harte, Guy Nicolette, Petros Giannikopoulos, Dirk Hockemeyer, Maya Petersen, Fyodor D. Urnov, Bradley R. Ringeisen, Mike Boots, Jennifer A. Doudna
Software Mentions: 2
Published: almost 3 years ago

10.1186/s12883-018-1044-1

Protocol for promoting recovery optimization of walking activity in stroke (PROWALKS): a randomized controlled trial
Cited by: 16
Author(s): Henry Wright, Tamara Wright, Ryan T. Pohlig, Scott E. Kasner, Jonathan Raser-Schramm, Darcy S. Reisman
Software Mentions: 2
Published: about 6 years ago

Projects: pypi: FAST

Papers Mentioning FAST 651