Ecosyste.ms: Papers

10.3390/ijms20174162

SILAC-Based Quantification of TGFBR2-Regulated Protein Expression in Extracellular Vesicles of Microsatellite Unstable Colorectal Cancers
Cited by: 13
Author(s): Fabia Fricke, Malwina Michalak, Uwe Warnken, Ingrid Haußer, Martina Schnölzer, Jürgen Kopitz, Johannes Gebert
Software Mentions: 14
Published: over 4 years ago

10.1038/s41598-019-46168-x

Cytotoxic unsaturated electrophilic compounds commonly target the ubiquitin proteasome system
Cited by: 16
Author(s): Karthik Selvaraju, Arjan Mofers, Paola Pellegrini, Johannes Salomonsson, Alexandra Ahlner, Vivian Morad, Ellin-Kristina Hillert, Belén Espinosa, Elias S.J. Arnér, Lasse Jensen, Jonas Malmström, Maria V. Turkina, Pádraig D’Arcy, Michael A. Walters, Maria Sunnerhagen, Stig Linder
Software Mentions: 10
Published: almost 5 years ago

10.16910/jemr.10.6.1

Abstracts of the 19th European Conference on Eye Movements 2017
Cited by: 3
Author(s): Ralph Radach, Heiner Deubel, Christian Vorstius, Markus Hofmann
Software Mentions: 9
Published: over 6 years ago

10.3389/fpls.2014.00078

Plasma membrane lipid–protein interactions affect signaling processes in sterol-biosynthesis mutants in Arabidopsis thaliana
Cited by: 24
Author(s): Henrik Zauber, Asdrúbal Burgos, Prashanth Garapati, Waltraud X. Schulze
Software Mentions: 9
Published: about 10 years ago

10.1186/2193-1801-3-474

Rapid publication-ready MS-Word tables for one-way ANOVA
Cited by: 131
Author(s): Houssein Assaad, Lan Zhou, Raymond J. Carroll, Guoyao Wu
Software Mentions: 8
Published: over 9 years ago

10.1371/journal.pone.0212248

Comparative genome analysis indicates high evolutionary potential of pathogenicity genes in Colletotrichum tanaceti
Cited by: 17
Author(s): Ruvini V. Lelwala, Pasi K. Korhonen, Neil D. Young, Jason B. Scott, Peter K. Ades, Robin B. Gasser, P. W. J. Taylor
Software Mentions: 8
Published: almost 5 years ago

10.1186/1471-2164-13-556

Proteome remodelling during development from blood to insect-form Trypanosoma brucei quantified by SILAC and mass spectrometry
Cited by: 117
Author(s): Kapila Gunasekera, Daniel Wüthrich, Sophie Braga-Lagache, Manfred Heller, Torsten Ochsenreiter
Software Mentions: 8
Published: over 11 years ago

10.1186/s12868-017-0371-2

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 2
Cited by: 7
Author(s): Leonid L. Rubchinsky, Sungwoo Ahn, Wouter Klijn, Ben Cumming, Stuart Yates, Vasileios Karakasis, Alexander Peyser, Marmaduke Woodman, Sandra Diaz-Pier, James Deraeve, Eliana Vassena, William H. Alexander, David Beeman, Paweł Kudela, Dana Boatman-Reich, William S. Anderson, Niceto R. Luque, Francisco Naveros, Richard R. Carrillo, Eduardo Ros, Angelo Arleo, Jacob Huth, Koki Ichinose, Jihoon Park, Yuji Kawai, Junko Suzuki, Hiroki Mori, Minoru Asada, Sorinel A. Oprisan, Austin I. Dave, Tahereh Babaie, Peter Robinson, Alejandro Tabas, Martin Andermann, André Rupp, Emili Balaguer‐Ballester, Henrik Lindén, Rasmus Kordt Christensen, Mari Nakamura, Tania Rinaldi Barkat, Zach Tosi, John M. Beggs, Davide Lonardoni, Fabio Boi, Stefano Di Marco, Alessandro Maccione, Luca Berdondini, Joanna Jędrzejewska‐Szmek, Daniel B. Dormán, Kim T. Blackwell, Christoph Bauermeister, Hanna Keren, Jochen Braun, João V. Dornas, Eirini Mavritsaki, Silvio Aldrovandi, Emma K. Bridger, Sukbin Lim, Nicolas Brunel, Anatoly Buchin, Clifford Charles Kerr, Anton V. Chizhov, Gilles Huberfeld, Richard Miles, Boris Gutkin, Martin Spencer, Hamish Meffin, David B. Grayden, Anthony N. Burkitt, Catherine E. Davey, Liangyu Tao, Vineet Tiruvadi, Rehman Ali, Helen S. Mayberg, Robert J. Butera, Cengiz Günay, Damon G. Lamb, Ronald L. Calabrese, Anca Doloc-Mihu, Víctor J. López‐Madrona, Fernanda S. Matias, Ernesto Pereda, Claudio R. Mirasso, Santiago Canals, Alice Geminiani, Alessandra Pedrocchi, Egidio D’Angelo, Claudia Casellato, Ankur Chauhan, Karthik Soman, V. Srinivasa Chakravarthy, Vignayanandam Ravindernath Muddapu, Chao-Chun Chuang, Nan-yow Chen, Mehdi Bayati, Jan Melchior, Laurenz Wiskott, Amir Azizi, Kamran Diba, Sen Cheng, Elena Y. Smirnova, E. G. Yakimova, Chi-Tin Shih, Dorian Florescu, Daniel Coca, Julie Courtiol, Viktor K. Jirsa, R. J. M. Covolan, Bartosz Teleńczuk, Richard Kempter, Gabriel Curio, Alain Destexhe, Jessica Parker, Alexander N. Klishko, Boris I. Prilutsky, Gennady Cymbalyuk, Felix Franke, Andreas Hierlemann, Rava Azeredo da Silveira, Stefano Casali, Stefano Masoli, Martina Francesca Rizza, Yinming Sun, Willy Wong, Faranak Farzan, Daniel M. Blumberger, Zafiris J. Daskalakis, Svitlana Popovych, Shivakumar Viswanathan, Nils Rosjat, Christian Grefkes, Silvia Daun, Damiano Gentiletti, Piotr Suffczyński, Vadym Gnatkovski, Marco de Curtis, Hyeonsu Lee, Se‐Bum Paik, Woochul Choi, Jaeson Jang, Youngjin Park, Jun Song, Min Song, Vicente Pallarés, Matthieu Gilson, Simone Kühn, Andrea Insabato, Gustavo Deco, Katharina Glomb, Adrián Ponce‐Alvarez, Petra Ritter, Adrià Tauste Campo, Alexander Thiele, F. Deeba, P. A. Robinson, Sacha J. van Albada, Andrew Rowley, Michael Hopkins, Maximilian Schmidt, Alan B. Stokes, David Lester, Steve Furber, Markus Diesmann, Alessandro Barri, Martin T. Wiechert, David A. DiGregorio, Alexander G. Dimitrov, Catalina Vich, Rune W. Berg, Antoni Guillamón, Susanne Ditlevsen, Romain D. Cazé, Benoît Girard, Stéphane Doncieux, Nicolas Doyon, Frank Boahen, Patrick Desrosiers, Edward Laurence, Louis J. Dubé, Eleonora Russo, Daniel Durstewitz, Dominik Schmidt, Tuomo Mäki‐Marttunen, Florian Krull, Francesco Bettella, Christoph Metzner, Anna Devor, Srdjan Djurovic, Anders M. Dale, Ole A. Andreassen, Gaute T. Einevoll, Solveig Næss, Torbjørn V. Ness, Geir Halnes, Eric Halgren, Klas H. Pettersen, Marte J. Sætra, Espen Hagen, Alina Schiffer, Axel Grzymisch, Malte Persike, Udo Ernst, Daniel Harnack, Nergis Tömen, Stefano Zucca, Valentina Pasquale, Giuseppe Pica, Manuel Molano-Mazón, Michela Chiappalone, Stefano Panzeri, Tommaso Fellin, Kelvin S. Oie, David L. Boothe, Joshua C. Crone, Alfred B. Yu, Melvin Felton, Isma Zulfiqar, Michelle Moerel, Peter De Weerd, Elia Formisano, Piotr J. Franaszczuk, Roland Diggelmann, Michele Fiscella, Domenico Guarino, Ján Antolík, Andrew Davison, Yves Frégnac, Benjamin Xavier Etienne, Flavio Fröhlich, Jérémie Lefebvre, Encarni Marcos, Maurizio Mattia, Aldo Genovesio, Leonid Fedorov, Tjeerd M. H. Dijkstra, Louisa Sting, Howard S. Hock, Martin A. Giese, Laure Buhry, Clément Langlet, Francesco Giovannini, Christophe Verbist, Stefano Salvadè, Michèle Giugliano, James A. Henderson, Hendrik Wernecke, Bulcsú Sándor, Claudius Gros, Nicole Voges, Paulina Dabrovska, Alexa Riehle, Thomas Brochier, Sonja Grün, Y. T. Gu, Pulin Gong, Grégory Dumont, Nikita A. Novikov, Parul Tewatia, Olivia Eriksson, Andrei Kramer, João Pedro Gonçalves dos Santos, Alexandra Jauhiainen, Jeanette Hellgren Kotaleski, Jovana J. Belić, Arvind Kumar, Masanori Shimono, Naomichi Hatano, Subutai Ahmad, Yuwei Cui, Jeff Hawkins, Johanna Senk, Karolína Korvasová, Tom Tetzlaff, Moritz Helias, Tobias Kühn, Michael Denker, PierGianLuca Porta Mana, David Dahmen, Jannis Schuecker, Sven Goedeke, Christian Keup, Katja Heuer, Rembrandt Bakker, Paul Tiesinga, Roberto Toro, Wei Qin, Alex E. Hadjinicolaou, M. Ibbotson, Tatiana Kameneva, William W. Lytton, Lealem Mulugeta, Andrew Drach, Jerry G. Myers, Marc Horner, Rajanikanth Vadigepalli, Tina Morrison, Marlei Walton, Martin J. Steele, C. Anthony Hunt, Nicoladie D. Tam, Rodrigo Amaducci, Carlos Múñiz, Manuel Reyes-Sánchez, Francisco B. Rodríguez, Pablo Varona, Joseph T. Cronin, Matthias Hennig, Elisabetta Iavarone, Jane Yi, Ying Shi, Bas-Jan Zandt, Werner Van Geit, Christian Rössert, Henry Markram, Sean Hill, Christian O’Reilly, Rodrigo Perin, Huanxiang Lu, Alexander Bryson, Michal Hadrava, Jaroslav Hlinka, Ryosuke Hosaka, Mark Olenik, Conor Houghton, Nicolangelo Iannella, Thomas Lavstsen, Rebecca Kotsakidis, Jaymar Soriano, Takatomi Kubo, Takao Inoue, Hirotaka Kida, Toshitaka Yamakawa, Michiyasu Suzuki, Kazushi Ikeda, Samira Abbasi, Amber E. Hudson, Detlef H. Heck, Dieter Jaeger, Joel Lee, Skirmantas Janušonis, Maria Luisa Saggio, Andreas Spiegler, William C. Stacey, Christophe Bernard, Davide Lillo, Spase Petkoski, Mark Drakesmith, Derek K. Jones, Ali Sadegh Zadeh, C. Kambhampati, Jan Karbowski, Zeynep Gokcen Kaya, Yair Lakretz, Alessandro Treves, Lily W. Li, Joseph T. Lizier, Cliff C. Kerr, Timothée Masquelier, Saeed Reza Kheradpisheh, Hojeong Kim, Chang Sub Kim, J. Marakshina, A. Vartanov, Anastasia Neklyudova, S. Kozlovskiy, A. Kiselnikov, Kanako Taniguchi, Katsunori Kitano, Oliver Schmitt, Felix Leßmann, Sebastian Schwanke, Peter Eipert, Meinhardt Jennifer, Julia Beier, Kanar Kadir, Adrian Karnitzki, Linda Sellner, Ann-Christin Klünker, Lena Kuch, Frauke Ruß, Jörg Jenssen, Andreas Wree, Paula Sanz‐Leon, S. A. Knock, Shih-Cheng Chien, Burkhard Maeß, Thomas R. Knösche, Charles C.H. Cohen, Marko Popović, Jan Klooster, Maarten H. P. Kole, Erik A. Roberts, Nancy Kopell, Daniel Kepple, Hamza Giaffar, Dima Rinberg, Alex Koulakov, Caroline Garcia Forlim, Leonie Klock, Johanna Bächle, Laura Stoll, Patrick Giemsa, Marie Fuchs, Nikola Schoofs, Christiane Montag, Jürgen Gallinat, Ray X. Lee, Greg Stephens, Bernd Kühn, Luiz Tauffer, Philippe Isope, Katsuma Inoue, Yoshiyuki Ohmura, Shogo Yonekura, Yasuo Kuniyoshi, Hyun Jae Jang, Jeehyun Kwag, Marc de Kamps, Yi Ming Lai, Filipa Santos, K. P. Lam, Péter András, Julia P. Imperatore, Jessica Helms, Tamás Tompa, Antonieta Lavín, Felicity H Inkpen, Michael C. Ashby, Nathan F. Lepora, Aaron R. Shifman, John E. Lewis, Zhong Zhang, Yeqian Feng, Christian Tetzlaff, Tomas Kulvičius, Yinyun Li, Rodrigo F. O. Pena, Davide Bernardi, Antonio Roque, Benjamin Lindner, Sebastian Vellmer, Aušra Saudargienė, Tiina Maninen, Riikka Havela, Marja-Leena Linne, Arthur S. Powanwe, André Longtin, Jesús Garrido, Joe W. Graham, Salvador Dura‐Bernal, Sergio Angulo, Samuel A. Neymotin, Srdjan D. Antic
Software Mentions: 7
Published: almost 7 years ago

10.7554/eLife.54967

A community-maintained standard library of population genetic models
Cited by: 96
Author(s): Jeffrey R. Adrion, Christopher B. Cole, Noah Dukler, Jared Galloway, Ariella L. Gladstein, Graham Gower, Christopher C. Kyriazis, Aaron P. Ragsdale, Georgia Tsambos, Franz Baumdicker, Jedidiah Carlson, Reed A. Cartwright, Arun Durvasula, Ilan Gronau, Bernard Kim, Patrick McKenzie, Philipp W. Messer, Ekaterina Noskova, Diego Ortega Del Vecchyo, Fernando Racimo, Travis J Struck, Simon Gravel, Ryan N. Gutenkunst, Kirk E. Lohmueller, Peter L. Ralph, Daniel R. Schrider, Adam Siepel, Jerome Kelleher, Andrew D. Kern
Software Mentions: 7
Published: almost 4 years ago

10.1128/mSystems.00063-20

Genomic Analysis of Bovine Staphylococcus aureus Isolates from Milk To Elucidate Diversity and Determine the Distributions of Antimicrobial and Virulence Genes and Their Association with Mastitis
Cited by: 31
Author(s): Sohail Naushad, Diego Nobrega, Syed Ali Raza Naqvi, Herman W. Barkema, Jeroen De Buck
Software Mentions: 7
Published: over 3 years ago

10.1186/s12879-015-0786-2

Identification of circulating biomarkers in sera of Plasmodium knowlesi-infected malaria patients – comparison against Plasmodium vivax infection
Cited by: 15
Author(s): Yeng Chen, Choon Kit Chan, Jesinda P Kerishnan, Yee Ling Lau, Yin-Ling Irene Wong, Subash C. B. Gopinath
Software Mentions: 6
Published: over 9 years ago

10.3390/genes11121500

Global Profiling of lncRNAs Expression Responsive to Allopolyploidization in Cucumis
Cited by: 7
Author(s): Panqiao Wang, Xiaqing Yu, Zhanguo Zhu, Yufei Zhai, Qinzheng Zhao, Meng Yang, Ji Li, Qunfeng Lou, Jinfeng Chen
Software Mentions: 6
Published: over 3 years ago

10.1186/gb-2013-14-2-r16

A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration
Cited by: 104
Author(s): Mario Looso, Jens Preussner, Konstantinos Sousounis, Marc Bruckskotten, Christian Michel, Ettore Lignelli, Richard Reinhardt, Sabrina Höffner, Marcus Krüger, Panagiotis A. Tsonis, Thilo Borchardt, Thomas Braun
Software Mentions: 6
Published: over 11 years ago

10.1371/journal.pone.0109012

Identification of Host-Immune Response Protein Candidates in the Sera of Human Oral Squamous Cell Carcinoma Patients
Cited by: 32
Author(s): Yeng Chen, Siti Nuraishah Azman, Jesinda P Kerishnan, Rosnah Binti Zain, Yu Nieng Chen, Yin-Ling Irene Wong, Subash C. B. Gopinath
Software Mentions: 5
Published: over 9 years ago

10.1186/s12859-019-2945-8

Helitron distribution in Brassicaceae and whole Genome Helitron density as a character for distinguishing plant species
Cited by: 24
Author(s): Kaining Hu, Kai Xu, Jing Wen, Bin Yi, Chaozhi Ma, Tingdong Fu, Yidan Ouyang, Jinxing Tu
Software Mentions: 5
Published: almost 5 years ago

10.18632/oncotarget.23206

Coagulation cascade and complement system in systemic lupus erythematosus
Cited by: 19
Author(s): Yan Liang, Shangbo Xie, Changhao Wu, Yuan Hu, Qin Zhang, Si Li, Yin‐Guang Fan, Rui‐Xue Leng, Hai‐Feng Pan, Huabao Xiong, Dong‐Qing Ye
Software Mentions: 5
Published: over 6 years ago

10.1186/s13104-019-4210-7

Development and use of a flexible data harmonization platform to facilitate the harmonization of individual patient data for meta-analyses
Cited by: 11
Author(s): Joeri Kalter, Maike G. Sweegers, Irma M. Verdonck‐de Leeuw, Johannes Brug, Laurien M. Buffart
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-91684-4

Peptide profiling in cow urine reveals molecular signature of physiology-driven pathways and in-silico predicted bioactive properties
Cited by: 6
Author(s): Rohit Kumar, Syed Azmal Ali, Sumit Kumar Singh, Vanya Bhushan, Jai K. Kaushik, Ashok Kumar Mohanty, Sanjay Kumar
Software Mentions: 5
Published: almost 3 years ago

10.3390/brainsci11010044

Get Your Guidance Going: Investigating the Activation of Spatial Priors for Efficient Search in Virtual Reality
Cited by: 13
Author(s): Julia Beitner, Jason Helbing, Dejan Draschkow, Melissa L.-H. Võ
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0111819

Expression Analysis of All Protease Genes Reveals Cathepsin K to Be Overexpressed in Glioblastoma
Cited by: 39
Author(s): Urška Verbovšek, Helena Motaln, Ana Rotter, Nadia A. Atai, Kristina Gruden, C. J. F. Van Noorden, Tamara T. Lah
Software Mentions: 5
Published: over 9 years ago

10.1038/s41598-020-60065-8

Functional omics analyses reveal only minor effects of microRNAs on human somatic stem cell differentiation
Cited by: 7
Author(s): Jessica Schira‐Heinen, A. Czapla, Marion Hendricks, Andreas Kloetgen, Wasco Wruck, James Adjaye, Gesine Kögler, Hans Müller, Kai Stühler, Hans‐Ingo Trompeter
Software Mentions: 5
Published: about 4 years ago

10.7554/eLife.53008

Functional heterogeneity of lymphocytic patterns in primary melanoma dissected through single-cell multiplexing
Cited by: 39
Author(s): Francesca Maria Bosisio, Asier Antoranz, Yannick Van Herck, Maddalena M. Bolognesi, Lukas Marcelis, Clizia Chinello, Jasper Wouters, Fulvio Magni, Leonidas G. Alexopoulos, Marguerite Stas, Veerle Boecxstaens, Oliver Bechter, Giorgio Cattoretti, Joost van den Oord
Software Mentions: 5
Published: over 4 years ago

10.1186/1471-2105-13-S4-S5

An ICT infrastructure to integrate clinical and molecular data in oncology research
Cited by: 29
Author(s): Daniele Segagni, Valentina Tibollo, Arianna Dagliati, Alberto Zambelli, Silvia G. Priori, Riccardo Bellazzi
Software Mentions: 4
Published: about 12 years ago

10.1186/s12864-016-2618-1

Transcriptome analysis of highly purified mouse spermatogenic cell populations: gene expression signatures switch from meiotic-to postmeiotic-related processes at pachytene stage
Cited by: 107
Author(s): Irene da Cruz, Rosana Rodríguez-Casuriaga, Federico F. Santiñaque, Joaquina Farías, Gianni Curti, Carlos A. Capoano, Gustavo A. Folle, Ricardo Benavente, José Sotelo‐Silveira, Adriana Geisinger
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0147221

Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics
Cited by: 36
Author(s): Robert A. Syme, Kar‐Chun Tan, James K. Hane, Kejal N Dodhia, Thomas Stoll, Marcus L. Hastie, Eiko Furuki, Simon R. Ellwood, Angela H. Williams, Yew‐Foon Tan, Alison C. Testa, Jeffrey J. Gorman, Richard P. Oliver
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0251820

Embryonic developmental arrest in the annual killifish Austrolebias charrua: A proteomic approach to diapause III
Cited by: 5
Author(s): Cora Chalar, Graciela Clivio, Jimena Montagne, Alicia Costábile, Analı́a Lima, Nicolás Papa, Nora Berois, María José Arezo
Software Mentions: 4
Published: almost 3 years ago

10.1098/rstb.2017.0382

OpenWorm: overview and recent advances in integrative biological simulation of <i>Caenorhabditis elegans</i>
Cited by: 68
Author(s): Gopal P. Sarma, Chee Wai Lee, Tom Portegys, Vahid Ghayoomie, Travis W Jacobs, Bradly Alicea, Matteo Carandini, Michael Currie, Richard C. Gerkin, Shane Gingell, Padraig Gleeson, Richard Gordon, Ramin Hasani, Giovanni Idili, Sergey Khayrulin, David Lung, Andrey Palyanov, Mark D Watts, Stephen Larson
Software Mentions: 4
Published: over 5 years ago

10.1186/s12862-017-1087-8

Rethinking the evolution of eukaryotic metabolism: novel cellular partitioning of enzymes in stramenopiles links serine biosynthesis to glycolysis in mitochondria
Cited by: 21
Author(s): Melania Abrahamian, Meenakshi S. Kagda, Audrey M. V. Ah‐Fong, Howard S. Judelson
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj-cs.321

Big data clustering techniques based on Spark: a literature review
Cited by: 14
Author(s): Mozamel M. Saeed, Zaher Al Aghbari, Mohammed Alsharidah
Software Mentions: 4
Published: over 3 years ago

10.3390/s21051879

Westdrive X LoopAR: An Open-Access Virtual Reality Project in Unity for Evaluating User Interaction Methods during Takeover Requests
Cited by: 6
Author(s): Farbod Nosrat Nezami, Maximilian Alexander Wächter, Nora Maleki, Philipp Spaniol, Lea M. Kühne, Anke Haas, Johannes M. Pingel, Linus Tiemann, Frederik Nienhaus, Lynn Keller, Sabine U. König, Peter König, Gordon Pipa
Software Mentions: 4
Published: about 3 years ago

10.1016/j.cels.2020.05.003

Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons
Cited by: 24
Author(s): Daria Bunina, Nade Abazova, Nichole Diaz, Kyung‐Min Noh, Jeroen Krijgsveld, Judith B. Zaugg
Software Mentions: 4
Published: almost 4 years ago

10.3390/toxins12010004

Alteration of Bumblebee Venom Composition toward Higher Elevation
Cited by: 7
Author(s): Nezahat Pınar Barkan, Mathieu Chevalier, Jean‐Nicolas Pradervand, Antoine Guisan
Software Mentions: 4
Published: over 4 years ago

10.1007/s12035-019-01643-4

Altered Levels of Proteins and Phosphoproteins, in the Absence of Early Causative Transcriptional Changes, Shape the Molecular Pathogenesis in the Brain of Young Presymptomatic Ki91 SCA3/MJD Mouse
Cited by: 14
Author(s): Kalina Wiatr, Piotr Piasecki, Łukasz Marczak, Paweł Wojciechowski, Małgorzata Kurkowiak, Rafał Płoski, Małgorzata Rydzanicz, Luiza Handschuh, Johannes Jungverdorben, Oliver Brüstle, Marek Figlerowicz, Maciej Figiel
Software Mentions: 4
Published: almost 5 years ago

10.15252/embr.201846557

Tamoxifen mechanically reprograms the tumor microenvironment via <scp>HIF</scp> ‐1A and reduces cancer cell survival
Cited by: 55
Author(s): Ernesto Cortés, Dariusz Lachowski, Benjamin Robinson, Müge Sarper, Jaakko Teppo, Stephen D. Thorpe, Tyler J Lieberthal, Kenji Iwamoto, David A. Lee, Mariko Okada‐Hatakeyama, Markku Varjosalo, Armando E. del Río Hernández
Software Mentions: 4
Published: over 5 years ago

10.1186/s13637-016-0044-y

A pedagogical walkthrough of computational modeling and simulation of Wnt signaling pathway using static causal models in MATLAB
Cited by: 2
Author(s): Shriprakash Sinha
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-021-81986-y

Proteome-wide profiling and mapping of post translational modifications in human hearts
Cited by: 15
Author(s): Navratan Bagwan, Henrik H. El Ali, Alicia Lundby
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-80926-6

Multi-slice ptychography enables high-resolution measurements in extended chemical reactors
Cited by: 11
Author(s): Maik Kahnt, Lukas Grote, Dennis Brückner, Martin Seyrich, Felix Wittwer, Dorota Koziej, Christian G. Schroer
Software Mentions: 4
Published: over 3 years ago

10.7717/peerj.7138

Could do better! A high school market survey of fish labelling in Sydney, Australia, using DNA barcodes
Cited by: 12
Author(s): Andrew Mitchell, Anna Rothbart, Greta J. Frankham, Rebecca N. Johnson, Linda E. Neaves
Software Mentions: 4
Published: almost 5 years ago

10.3390/biom11091303

Determination of Butyrate Synthesis Capacity in Gut Microbiota: Quantification of but Gene Abundance by qPCR in Fecal Samples
Cited by: 5
Author(s): Nikola Ďásková, Marie Heczková, István Módos, Petra Vídeňská, Petra Šplíchalová, Helena Pelantová, Marek Kuzma, Jan Gojda, Monika Cahová
Software Mentions: 4
Published: over 2 years ago

10.3390/s20113166

A Distributed Stream Processing Middleware Framework for Real-Time Analysis of Heterogeneous Data on Big Data Platform: Case of Environmental Monitoring
Cited by: 15
Author(s): Adeyinka K. Akanbi, Muthoni Masinde
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13002-021-00467-8

Comparative analysis of management practices and end-users’ desired breeding traits in the miracle plant [Synsepalum dulcificum (Schumach &amp; Thonn.) Daniell] across ecological zones and sociolinguistic groups in West Africa
Cited by: 7
Author(s): Dèdéou Apocalypse Tchokponhoué, Enoch G. Achigan‐Dako, Sognigbé N’Danikou, Daniel Nyadanu, Rémi Kahane, Alfred Odindo, Julia Sibiya
Software Mentions: 4
Published: almost 3 years ago

10.1186/s12859-014-0386-y

Finding gene regulatory network candidates using the gene expression knowledge base
Cited by: 8
Author(s): Aravind Venkatesan, Sushil Tripathi, Alejandro Sanz de Galdeano, Ward Blondé, Astrid Lægreid, Vladimir Mironov, Martin Kuiper
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0256146

Evaluating artisanal fishing of globally threatened sharks and rays in the Bay of Bengal, Bangladesh
Cited by: 13
Author(s): Alifa Bintha Haque, Rachel D. Cavanagh, Nathalie Seddon
Software Mentions: 3
Published: over 2 years ago

10.1371/journal.pone.0241990

Rapid assessment of psychological and epidemiological correlates of COVID-19 concern, financial strain, and health-related behavior change in a large online sample
Cited by: 116
Author(s): Benjamin W Nelson, Adam Pettitt, Jessica Flannery, Nicholas Allen
Software Mentions: 3
Published: over 3 years ago

10.1111/rssa.12124

Statistical Modelling of Citation Exchange Between Statistics Journals
Cited by: 25
Author(s): Cristiano Varin, Manuela Cattelan, David Firth
Software Mentions: 3
Published: over 8 years ago

10.2196/28328

Biannual Differences in Interest Peaks for Web Inquiries Into Ear Pain and Ear Drops: Infodemiology Study
Cited by: 1
Author(s): Faris F. Brkic, Gerold Besser, Martin Schally, Elisabeth M Schmid, Thomas Parzefall, Dominik Riss, David T. Liu
Software Mentions: 3
Published: almost 3 years ago

10.1186/1471-2105-9-S2-S15

SWS: accessing SRS sites contents through Web Services
Cited by: 4
Author(s): Paolo Romano, Domenico Marra
Software Mentions: 3
Published: about 16 years ago

10.3390/ijms21010179

Analysis of the Barley Malt Rootlet Proteome
Cited by: 8
Author(s): Ramamurthy Mahalingam
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0049455

Comparative Analysis of Genome Sequences Covering the Seven Cronobacter Species
Cited by: 104
Author(s): Susan Joseph, Prerak Desai, Yongmei Ji, Craig Cummings, Pei-Ju Rita Shih, Lovorka Degoricija, Alain Rico, Pius Brzoska, Stephen E. Hamby, Naqash Masood, Sumyya Hariri, Hana Sonbol, Nadia Chuzhanova, Michael McClelland, Manohar R. Furtado, Stephen Forsythe
Software Mentions: 3
Published: over 11 years ago

10.3390/ijms21082794

Similar Yet Different–Structural and Functional Diversity among Arabidopsis thaliana LEA_4 Proteins
Cited by: 10
Author(s): Patrick Knox-Brown, Tobias Rindfleisch, Anne Günther, Kim Balow, Anne Bremer, Dirk Walther, Markus S. Miettinen, Dirk K. Hincha, Anja Thalhammer
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0256633

Challenges in updating habitat suitability models: An example with the lesser prairie-chicken
Cited by: 1
Author(s): Catherine S. Jarnevich, Pairsa Belamaric, Kent A. Fricke, Michael G. Houts, Liza Rossi, Grant M. Beauprez, Brett S. Cooper, Russell L. Martin
Software Mentions: 3
Published: over 2 years ago

10.2196/14725

Online Information on Electronic Cigarettes: Comparative Study of Relevant Websites From Baidu and Google Search Engines
Cited by: 11
Author(s): Ting Chen, Sarah Gentry, Dechao Qiu, Yan Deng, Caitlin Notley, Guangwen Cheng, Fujian Song
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms17020191

Prioritization of Susceptibility Genes for Ectopic Pregnancy by Gene Network Analysis
Cited by: 11
Author(s): Ji‐Long Liu, Miao Zhao
Software Mentions: 3
Published: over 8 years ago

10.3390/ijms22137071

Structure-Based Virtual Screening Reveals Ibrutinib and Zanubrutinib as Potential Repurposed Drugs against COVID-19
Cited by: 18
Author(s): Satyavani Kaliamurthi, Gurudeeban Selvaraj, Chandrabose Selvaraj, Sanjeev Kumar Singh, Dong Wei, Gilles H. Peslherbe
Software Mentions: 3
Published: almost 3 years ago

10.1155/2019/4861081

Contribution of Four Polymorphisms in Renin-Angiotensin-Aldosterone-Related Genes to Hypertension in a Thai Population
Cited by: 7
Author(s): Pimphen Charoen, Jakris Eu-ahsunthornwattana, Nisakron Thongmung, Pedro A. José, Piyamitr Sritara, Prin Vathesatogkit, Chagriya Kitiyakara
Software Mentions: 3
Published: almost 5 years ago

10.3390/toxins13010029

New Insectotoxin from Tibellus Oblongus Spider Venom Presents Novel Adaptation of ICK Fold
Cited by: 3
Author(s): Yuliya V. Korolkova, Ekaterina E. Maleeva, Alexander Mikov, Anna A. Lobas, Elizaveta M. Solovyeva, Mikhail V. Gorshkov, Yaroslav A. Andreev, Steve Peigneur, Jan Tytgat, Fedor D. Kornilov, Владислав А. Лушпа, K.S. Mineev, Sergey A. Kozlov
Software Mentions: 3
Published: over 3 years ago

10.2196/22734

Health, Psychosocial, and Social Issues Emanating From the COVID-19 Pandemic Based on Social Media Comments: Text Mining and Thematic Analysis Approach
Cited by: 32
Author(s): Oladapo Oyebode, Chinenye Ndulue, Ashfaq Adib, Dinesh Mulchandani, Banuchitra Suruliraj, Fidelia A. Orji, Christine T. Chambers, Sandra Meier, Rita Orji
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0230760

Disease risk analysis in sea turtles: A baseline study to inform conservation efforts
Cited by: 17
Author(s): Narges Mashkour, Karina Jones, Sara Kophamel, Teresa Hipolito, Shamim Ahasan, Grant Walker, Richard Jakob-Hoff, Maxine Whittaker, Mark Hamann, Ian Bell, Jennifer Elliman, Leigh Owens, Claire Saladin, José Luìs Crespo-Picazo, Brett R. Gardner, Aswini Leela Loganathan, Rachel O Bowater, Erina Young, David P. Robinson, Warren Baverstock, David Blyde, Duan March, Maryam Eghbali-Babadi, Maryam Mohammadi, Daniela Freggi, Jane Giliam, Mike Hale, Nicholas Nicolle, Kevin Spiby, Daphne Wrobel, Mariluz Parga, Asghar Mobaraki, R. S. Rajakaruna, Kevin Hyland, Mark Read, Ellen Ariel
Software Mentions: 3
Published: over 3 years ago

10.2196/24322

Health Apps for Combating COVID-19: Descriptive Review and Taxonomy
Cited by: 53
Author(s): Manal Almalki, Anna Giannicchi
Software Mentions: 3
Published: about 3 years ago

10.3390/s18061935

A Distributed Model for Stressors Monitoring Based on Environmental Smart Sensors
Cited by: 3
Author(s): Alberto de Ramón-Fernández, Daniel Ruiz-Fernández, Diego Marcos-Jorquera, Virgilio Gilart-Iglesias
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12859-020-03894-8

A2A: a platform for research in biomedical literature search
Cited by: 3
Author(s): Maciej Rybiński, Sarvnaz Karimi, Vincent Nguyen, Cécile Paris
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj-cs.508

Natural language inference for Malayalam language using language agnostic sentence representation
Cited by: 3
Author(s): Sara Renjit, Sumam Mary Idicula
Software Mentions: 3
Published: about 3 years ago

10.1186/s12864-019-5456-0

Global host molecular perturbations upon in situ loss of bacterial endosymbionts in the deep-sea mussel Bathymodiolus azoricus assessed using proteomics and transcriptomics
Cited by: 9
Author(s): Camille Détrée, Iman Haddad, Emmanuelle Demey-Thomas, Joëlle Vinh, François H. Lallier, Arnaud Tanguy, Jean Mary
Software Mentions: 3
Published: over 5 years ago

10.1016/j.omtn.2020.04.018

MicroRNA-4500 Inhibits Migration, Invasion, and Angiogenesis of Breast Cancer Cells via RRM2-Dependent MAPK Signaling Pathway
Cited by: 28
Author(s): Shaoying Li, Hui-Fen Mai, Yefeng Zhu, Guofeng Li, Jing Sun, Guisen Li, Bichan Liang, Heng Chen
Software Mentions: 3
Published: over 3 years ago

10.3390/s21051559

IoTCrawler: Challenges and Solutions for Searching the Internet of Things
Cited by: 12
Author(s): Thorben Iggena, Eushay Bin Ilyas, Marten Fischer, Ralf Tönjes, Tarek Elsaleh, Roonak Rezvani, Narges Pourshahrokhi, Stefan Bischof, Andreas Fernbach, Josiane Xavier Parreira, Patrik Schneider, Pavel A. Smirnov, Martin Strohbach, Hien Thi Thu Truong, Aurora González-Vidal, Antonio F. Skarmeta, Parwinder Singh, Michail J. Beliatis, Mirko Presser, Juan Antonio Martı́nez, Pedro Gonzalez-Gil, Marianne Krogbæk, Sebastian Christophersen
Software Mentions: 3
Published: about 3 years ago

10.7554/eLife.62621

miR-125-chinmo pathway regulates dietary restriction-dependent enhancement of lifespan in Drosophila
Cited by: 12
Author(s): Manish Pandey, Sakshi Bansal, Sudipta Bar, Amit Kumar Yadav, Nicholas S. Sokol, Jason M. Tennessen, Pankaj Kapahi, Geetanjali Chawla
Software Mentions: 3
Published: almost 3 years ago

10.1186/s12953-015-0063-8

Proteomic characterization of adrenal gland embryonic development reveals early initiation of steroid metabolism and reduction of the retinoic acid pathway
Cited by: 8
Author(s): Gry H. Dihazi, G. Muêller, Abdul R. Asif, Marwa Eltoweissy, Johannes T. Wessels, Hassan Dihazi
Software Mentions: 3
Published: over 9 years ago

10.2196/ijmr.6231

Internet Use and Access, Behavior, Cyberbullying, and Grooming: Results of an Investigative Whole City Survey of Adolescents
Cited by: 11
Author(s): Marco Flavio Michele Vismara, Joseph Toaff, Giuliana Pulvirenti, Chiara Settanni, Emma Colao, Serena Marianna Lavano, Riccardo Cemicetti, David Cotugno, Giuseppe Perrotti, Viviana Meschesi, Roberto Montera, Barbara Zepponi, Umberto Rapetto, Rosa Marotta
Software Mentions: 3
Published: over 6 years ago

10.1186/s12953-016-0092-y

Quantitative succinylome analysis in the liver of non-alcoholic fatty liver disease rat model
Cited by: 32
Author(s): Yang Cheng, Tianlu Hou, Ping Jian, Xianhai Zeng, Jianjie Chen
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-018-4982-5

Deciphering the oviductal extracellular vesicles content across the estrous cycle: implications for the gametes-oviduct interactions and the environment of the potential embryo
Cited by: 91
Author(s): Carmen Almiñana, Guillaume Tsikis, Valérie Labas, Rustem Uzbekov, Juliano Coelho da Silveira, Stefan Bauersachs, Pascal Mermillod
Software Mentions: 3
Published: over 5 years ago

10.1074/mcp.RA119.001839

Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker
Cited by: 32
Author(s): Karl A.T. Makepeace, Yassene Mohammed, Elena L. Rudashevskaya, Evgeniy V. Petrotchenko, F.-Nora Vögtle, Chris Meisinger, Albert Sickmann, Christoph H. Borchers
Software Mentions: 3
Published: about 4 years ago

10.1098/rsos.191231

Trophy hunters pay more to target larger-bodied carnivores
Cited by: 5
Author(s): Ilona Mihalik, Andrew Bateman, Chris T. Darimont
Software Mentions: 3
Published: over 4 years ago

10.1186/s13068-019-1506-8

Transcriptomic and proteomic responses to very low CO2 suggest multiple carbon concentrating mechanisms in Nannochloropsis oceanica
Cited by: 40
Author(s): Li Wei, Mohamed El Hajjami, Chen Shen, Wuxin You, Yandu Lu, Jing Li, Xiaoyan Jing, Qiang Hu, Wenxu Zhou, Ansgar Poetsch, Jian Xu
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.bpj.2018.01.033

CONAN: A Tool to Decode Dynamical Information from Molecular Interaction Maps
Cited by: 70
Author(s): Davide Mercadante, Frauke Gräter, Csaba Daday
Software Mentions: 3
Published: about 6 years ago

10.1074/mcp.RA119.001769

Dynamic Transcriptomic and Phosphoproteomic Analysis During Cell Wall Stress in Aspergillus nidulans
Cited by: 5
Author(s): Cynthia Chelius, Walker Huso, Samantha Reese, Alexander Doan, Stephen R. Lincoln, Kelsi Lawson, Bao Tran, Raj Purohit, Trevor Glaros, Ranjan Srivastava, Steven D. Harris, Mark R. Marten
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13059-019-1799-8

Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency
Cited by: 43
Author(s): Taolan Zhao, Qing Huan, Jing Sun, Chunyan Liu, Xiuli Hou, Xiang Yu, Ian M. Silverman, Yi Zhang, Brian D. Gregory, Chunming Liu, Wenfeng Qian, Xiaofeng Cao
Software Mentions: 3
Published: over 4 years ago

10.1074/mcp.O115.049460

A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day*
Cited by: 39
Author(s): Fabian Hosp, Richard A. Scheltema, H. Christian Eberl, Nils A. Kulak, Eva C. Keilhauer, Korbinian Mayr, Matthias Mann
Software Mentions: 3
Published: almost 9 years ago

10.1016/j.ymben.2017.11.011

Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells
Cited by: 21
Author(s): Emanuel Gonçalvès, Marco Sciacovelli, Ana S.H. Costa, Maxine Tran, Timothy Isaac Johnson, Daniel Machado, Christian Frezza, Julio Sáez-Rodríguez
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.6733

DNA Barcoding and geographical scale effect: The problems of undersampling genetic diversity hotspots
Cited by: 23
Author(s): Álvaro Gaytán, Johannes Bergsten, Tara Canelo, Carlos Pérez‐Izquierdo, M. Gabriella Santoro, Raúl Bonal
Software Mentions: 3
Published: over 3 years ago

10.1186/s12866-020-01877-6

Proteomic analysis of Rickettsia akari proposes a 44 kDa-OMP as a potential biomarker for Rickettsialpox diagnosis
Cited by: 5
Author(s): František Csicsay, Gabriela Flores‐Ramírez, Fernando Zúñiga-Navarrete, Mária Bartošová, Alena Fučíková, Petr Pajer, Jiří Dresler, Ľudovít Škultéty, Marco Antonio Quevedo-Diaz
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13054-016-1208-6

36th International Symposium on Intensive Care and Emergency Medicine
Cited by: 215
Author(s): RM Bateman, Michael D. Sharpe, Justin E. Jagger, Chiara Ellis, Jordi Solé‐Violán, Mónica López-Rodríguez, Estefanía Herrera-Ramos, JA Ruiz-Hernández, Luis Borderías, Juan Pablo Horcajada, N. González-Quevedo, Olga Rajas, Ma Luisa Briones, Felipe Rodrı́guez de Castro, Claudio Gallego, Figen Esen, Günseli Orhun, Perihan Ergin Özcan, Evren Şentürk, Canan Uğur Yılmaz, Nurcan Orhan, Nadir Arıcan, Mehmet Fedai Kaya, Melike Küçükerden, Murat Giriş, Uğur Akcan, Sema Bilgiç Gazioğlu, Eray Tüzün, Reut Riff, Oshri Naamani, Amos Douvdevani, Ryosuke Takegawa, Hisao Yoshida, Tomoya Hirose, Naoki Yamamoto, Hideharu Hagiya, Masahiro Ojima, Yukihiro Akeda, Osamu Tasaki, Kazunori Tomono, Takeshi Shimazu, Satoshi Ono, Toshio Kubo, S Suda, Takamasa Ueno, Takahisa Ikeda, Hiroshi Ogura, Hiroki Takahashi, Ji Won Kang, Youhei Nakamura, Takashi Kojima, Yoshito Izutani, Tadatsugu Taniguchi, C. Dinter, Jan Lotz, Beth Eilers, C. Wissmann, Rex S. Lott, Marc Meili, Philipp Schuetz, Hassan Hawa, Moh’d A. Sharshir, M. Aburageila, Nawal Salahuddin, Vasiliki Chantziara, Sophia Georgiou, Angeliki M. Tsimogianni, Panagiotis Alexandropoulos, Avgi Vassi, F. Lagiou, M. Valta, Georgia Micha, E. Chinou, G. Michaloudis, A. Kodaira, Hitoshi Imaizumi, M. V. de la Torre-Prados, A García-de la Torre, Alfredo Enguix-Armada, A Puerto-Morlán, V. Perez-Valero, Ángel García-Alcántara, N. Bolton, JM Dudziak, Samantha Bonney, Ascanio Tridente, Patrick Née, Gerry A. F. Nicolaes, Maryse A. Wiewel, MJ Schultz, Karin C. A. A. Wildhagen, Janneke Horn, Roy Schrijver, Tom van der Poll, Chris Reutelingsperger, Suresh Pillai, G. Davies, Graham Mills, Rachel Aubrey, K. Morris, Paul Williams, Patrick Evans, Étienne Gayat, Julian P. Struck, Alain Cariou, Nicolas Deye, Bertrand Guidet, S. Jabert, Jean‐Marie Launay, M Legrand, Marc Léone, Matthieu Resche‐Rigon, Éric Vicaut, Antoine Vieillard‐Baron, Amel Mebazâa, Ryan Arnold, Müge Capan, Adam Linder, Per Åkesson, Monica Popescu, Dana Tomescu, Charles L. Sprung, Ricardo Morales, G Munteanu, Efrat Orenbuch‐Harroch, Paul E. Levin, Harvey L. Kasdan, Austin Reiter, T. Volker, Y. Himmel, Yves Cohen, Julien Meissonnier, Louis Girard, Fabien Rebeaud, I. F. Herrmann, Benjamin Delwarde, Estelle Peronnet, Enrico Cerrato, Fabienne Venet, Alain Lepape, Thomas Rimmelé, Guillaume Monneret, Julien Textoris, Н. В. Белобородова, V. Moroz, А. А. Осипов, Aleksandra Bedova, Y. Sarshor, Alisa Pautova, Alexander Sergeev, Ekaterina Chernevskaya, Jonas Odermatt, Rebekka Bolliger, Lara Hersberger, M. Ottiger, Mirjam Christ‐Crain, B. Mueller, Philipp Schuetz, Narendra Kumar Sharma, A. K. Tashima, Mkc Brunialti, Flávia Ribeiro Machado, M. Assuncao, Otelo Rigato, Reinaldo Salomão, Sara Cajander, Gail E. Rasmussen, Elisabet Tina, Bo Söderquist, J. Källman, Kristoffer Strålin, A. L. Lange, Jonas Sundén-Cullberg, Allison Magnuson, Olof Hultgren, P. Van der Geest, Mostafa Mohseni, Jo Linssen, Rogier de Jonge, Servet Duran, Johan Groeneveld, R. Miller, Bert K. Lopansri, Leo McHugh, Anthony Seldon, Jacqueline Burke, Joy Johnston, R. Reece-Anthony, Ann Bond, A Molokhia, Christopher McGrath, Emmanuel Nsutebu, Peter Bank Pedersen, Daniel Pilsgaard Henriksen, Søren Mikkelsen, Annmarie Touborg Lassen, R.C. Tincu, Cristian Cobilinschi, Z. Ghiorghiu, Radu Alexandru Macovei, Maryse A. Wiewel, Matthew B.A. Harmon, Lonneke A. van Vught, Brendon P. Scicluna, Arie J. Hoogendijk, A. H. Zwinderman, Olaf L. Cremer, Marc J. M. Bonten, MJ Schultz, NP Juffermans, W. J. Wiersinga, Gülay Eren, Yasemin Tekdöş, M. Dogan, Özlem Acicbe, Ergün Barış Kaya, Oya Hergünsel, Sami Alsolamy, Ghassan Al Ghamdi, Lolowa Alswaidan, Shmeylan Alharbi, Farhan Alenezi, Y Arabi, J. D. Heaton, Adam Boyce, Lea Nolan, A. Dukoff-Gordon, A. Dean, T. Mann Ben Yehudah, Carolin Fleischmann, D. Thomas-Rueddel, C. Haas, Ulf Dennler, Konrad Reinhart, Onnicha Suntornlohanakul, Bodin Khwannimit, F. R. Breckenridge, Alex Puxty, Petr Szturz, P. Folwarzcny, Jan Švancara, Roman Kula, Pavel Ševčík, Luca Caneva, Alberto Casazza, E. Bellazzi, Serena Marra, Laura Pagani, M. Lo Vetere, R. Vanzino, D. Ciprandi, R. Preda, R. Boschi, L Carnevale, Victor Lopez, M. Aguilar Arzapalo, Lucimara da Silva Barradas, Ananías A. Escalante, Jimena Gongora, M. Cetina, Barbara Adamik, D Jakubczyk, Andrzej Kübler, Anthony J. Radford, T. Lee, Joel Singer, J. Gordon Boyd, David Fineberg, Michael J.A. Williams, J. M. Russell, Ecaterina Scărlătescu, Gabriela Droc, Sorin Ștefan Aramă, Martha Muller, Marleen Straat, Sacha Zeerleder, Cathérine Fuchs, Christian Scheer, S. W. Wauschkuhn, Marcus Vollmer, Konrad Meissner, Simone Kühn, Klaus Hahnenkamp, S. Rehberg, Matthias Gründling, Shigeto Hamaguchi, Esther Gómez-Sánchez, María Heredia-Rodríguez, E. Álvarez-Fuente, Mario Lorenzo-López, Estefanía Gómez-Pesquera, Marta Aragón-Camino, P. Liu-Zhu, A. Sánchez-López, A. Hernández-Lozano, M. T. Peláez-Jareño, E. Tamayo, Daniel Thomas-Rüddel, V. Adora, Ayaskanta Kar, Apu Chakraborty, Sabyasachi Roy, Arun Bandyopadhyay, Manoj Das, Gal Ben-Yehudah, Mohammad Salim, Neelja Kumar, Leila Arabi, T. Burger, Paul Lephart, E. Toth-martin, César Valencia, Naïma Hammami, Stijn Blot, J. L. Vincent, Marie‐Laurence Lambert, Jana Brunke, T. Riemann, Ingolf Roschke, Sireethorn Nimitvilai, Kavita Jintanapramote, S. Jarupongprapa, Dalia Adukauskienė, Dovilė Valančienė, Gauruv Bose, V. Lostarakos, Bridie Carr, S. Khedher, A. Maaoui, A. Ezzamouri, Marwa Rashad Salem, J. Chen, D.R. Cranendonk, Michael Day, G. Penrice, Kirsty Roy, Paul B. Robertson, Gauri Godbole, Brad Jones, Malcolm Booth, Lindsay Donaldson, Yasumasa Kawano, Hiroyasu Ishikura, Hasan M. Al‐Dorzi, M. Almutairi, B. Alhamadi, A. Toledo, Roozehra Khan, Basel Al Raiy, Haleh Talaie, Jos A van Oers, A. Harts, Ellen Nieuwkoop, Piet Vos, Y. Boussarsar, F. Boutouta, Salma Kamoun, I. Mezghani, S. Koubaji, A. Souissi, Anis Riahi, Mhamed Sami Mebazaa, E Giamarellos-Bourboulis, Nikolaos Tziolos, Christina Routsi, Chrysostomos Katsenos, Iraklis Tsangaris, Ioannis Pneumatikos, G. Vlachogiannis, Vasiliki Theodorou, A. Prekates, E. Antypa, V. Koulouras, N. Kapravelos, Charalambos Gogos, E Antoniadou, K. Mandragos, Apostolos Armaganidis, A Robles Caballero, Belén Civantos, Juan Carlos Figueira, Jessica Lopez, André Silva‐Pinto, Fátima Ceia, A Sarmento, Luis Sánchez Santos, Ghaleb Almekhlafi, Yasser Sakr, Salim Baharoon, Abdulaziz Al‐Dawood, Amal Matroud, John Alchin, Sameera Al Johani, Hanan H. Balkhy, Sami Yousif, B. O. Alotabi, Abdulmohsen Alsaawi, Jocelyn Y. Ang, M. D. Curran, David Enoch, V. Navapurkar, Andrew Conway Morris, Rory J Sharvill, J. Astin, Jina Patel, Carsten Krüger, J O'Neal, Heather M. Rhodes, Jon T. Jancik, Bruno François, Pierre François Laterre, Philippe Eggimann, A. Torres, M. J. Gómez Sánchez, Pierre‐François Dequin, Gianluigi Li Bassi, Jean Chastre, Hasan S. Jafri, M. Ben Romdhane, Z. Douira, M. Bousselmi, A Vakalos, V. Avramidis, Thomas Craven, Gosha Wojcik, Kallirroi Kefala, J. McCoubrey, Jacqui Reilly, R. Paterson, Donald Inverarity, Ian F. Laurenson, Tim Walsh, Silvia Mongodi, B. Bouhemad, Anita Orlando, Andréa Stella, Gabriele Via, Giorgio Iotti, A. Braschi, Francesco Mojoli, Murat Haliloğlu, Beliz Bilgili, Umut Sabri Kasapoğlu, İsmet Sayan, Melek Süzer Aslan, Abdussamed Yalçın, İsmail Cinel, Helen Ellis, Kris Bauchmüller, Donna Miller, Andrew Temple, C. E. Luyt, Mervyn Singer, Yasser Nassar, Mary Ayad, Ahlem Trifi, Sami Abdellatif, Frank Daly, R Nasri, S. Ben Lakhal, Fethi Gül, A. Kuzovlev, А. К. Шабанов, С. Г. Половников, N. Kadrichu, Thu O. Dang, K Corkery, P. Challoner, Gianluigi Li Bassi, Eva de los Ángeles Miralles Aguilera, Chiara Chiurazzi, Chiara Travierso, Ana Motos, Lucila María Pérez Fernández, Rosanel Amaro, Tarek Senussi, Francesco Idone, Joaquim Bobí, Montserrat Rigol, C. J. Hodiamont, J. M. Janssen, Catherine S. C. Bouman, Ron A. A. Mathôt, Menno D. de Jong, Reinier M. van Hest, Liz Payne, Gilles L. Fraser, Bianca Tudor, Matthias Lahner, Georg A. Roth, C.-G. Krenn, P. Jault, J. Gabard, Thomas Leclerc, Serge Jennes, Yok-Ai Que, A. Rousseau, François Ravat, Abdullah T. Eissa, Tarek Aldabbagh, F. Paramba, Nishan K Purayil, Vamanjore A Naushad, Osama Mohammad, Vijay Kumar Negi, P Prarthana Chandra, A. Kleinsasser, M. R. Witrz, J. F. Buchner-Doeven, A. M. Tuip-de Boer, J. C. Goslings, M. Van Hezel, Alexandra Crispim Boing, Rykel van Bruggen, NP Juffermans, Dimitra Markopoulou, Kyriaki Venetsanou, Vasileios Kaldis, D. Koutete, D. Chroni, Ioannis Alamanos, Lionel Koch, E. Walter, Kunihiko Maekawa, Mineji Hayakawa, Shigeki Kushimoto, Atsushi Shiraishi, Hirotaka Kato, Junichi Sasaki, T. Matauoka, Tokuhisa Uejima, Naoto Morimura, Akira Hagiwara, Masahide Takeda, О. Тарабрин, S. Shcherbakow, D. Gavrychenko, G. Mazurenko, В. В. Иванова, O. Chystikov, Collin Plourde, Justine Lessard, Jean‐Marc Chauny, R. D. 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Guy, Julian Wijesuriya, Sean Keogh, Annemarie B Docherty, Regina O’Donnell, Susan J Brunskill, Marialena Trivella, Carolyn Dorée, Line Marie Holst, Mary C. Parker, Markil Gregersen, Juliano Pinheiro de Almeida, Tim Walsh, Simon Stanworth, S. Moravcova, Jenny Mansell, A. Rogers, R. A. Smith, Colin Hamilton-Davies, Abdulla Omar, Mahmoud Allam, O. Bilala, Ali Kindawi, HA Ewila, Angelakis Malamas, G. Ferreira, José Guilherme Mendes Pereira Caldas, J Fukushima, E Osawa, E. Arita, Lígia Câmara, S Zeferino, Juliette Jardim, F. Gaioto, Luís Roberto Palma Dallan, Fábio Biscegli Jatene, Roberto Kalil Filho, Filomena Regina Barbosa Gomes Galas, L. A. Hajjar, Chieko Mitaka, Tetsu Ohnuma, Takanori Murayama, Fumio Kunimoto, Maki Nagashima, Toshinobu Takei, Makoto Tomita, Karim M. Mahmoud, Samy Hanoura, S Sudarsanan, Praveen Sivadasan, H. Othamn, Yasser Shouman, Reetu Singh, A Al Khulaifi, Irina A. Mandel, S. Mikheev, Irina V. Suhodolo, В. В. Киселев, Yu. P. Svirko, Yu. K. Podoksenov, Stephen A. 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Molmy, Nicolas Van Grunderbeeck, Olivier Nigeon, Malcolm Lemyze, Didier Thévenin, Jihad Mallat, Maryam Correa, Raquel Carvalho, A. Fernández, Craig A. McBride, E. Koonthalloor, Catherine Walsh, Ann Webber, Maureen C. Ashe, Kirsten V. Smith, Meropi Dimitriadou, P. Mantzafleri, O. Vrani, A. Arbouti, T. Varsami, Jan Bollen, Tim C. van Smaalen, W. C. De Jongh, M.M. ten Hoopen, Dirk Ysebaert, L. W. Van Heurn, Walther N. van Mook, Amanda Roze des Ordons, Philippe Couillard, Christopher Doig, Rose-Lima Van Keer, Reginald Deschepper, A Francke, Luc Huyghens, Johan Bilsen, B. Nyamaizi, Chris Dalrymple, A. Dobru, E. Marrinan, A. Ankuli, R. Struthers, Rebecca Crawford, P. Morelli, M. Degiovanangelo, Felipe Kesrouani Lemos, V. MArtinez, J. L. Santana Cabrera, A Rutten, S. Van Ieperen, Sabrina Geer, Marieke K. van Vugt, E. Der Kinderen, Alberto Giannini, Guido Miccinesi, Tiziana Marchesi, Edi Prandi
Software Mentions: 3
Published: about 8 years ago

10.1186/s12874-021-01295-w

Quality assessment tools used in systematic reviews of in vitro studies: A systematic review
Cited by: 35
Author(s): Linh Tran, Dao Ngoc Hien Tam, Abdelrahman Elshafay, Thao Dang, Kenji Hirayama, Nguyen Tien Huy
Software Mentions: 3
Published: about 3 years ago

10.1186/s12911-019-0806-z

A mobile health monitoring-and-treatment system based on integration of the SSN sensor ontology and the HL7 FHIR standard
Cited by: 49
Author(s): Shaker El–Sappagh, Farman Ali, Abdeltawab Hendawi, Jun‐Hyeog Jang, Kyung Sup Kwak
Software Mentions: 3
Published: about 5 years ago

10.15252/emmm.201910427

Plasma Proteome Profiling to detect and avoid sample‐related biases in biomarker studies
Cited by: 141
Author(s): Philipp E. Geyer, Eugenia Voytik, Peter V. Treit, Sophia Doll, Alisa Kleinhempel, Lili Niu, Johannes B. Müller-Reif, Marie-Luise Buchholtz, Jakob Bader, Daniel Teupser, Lesca M. Holdt
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-021-98454-2

Protein expression reveals a molecular sexual identity of avian primordial germ cells at pre-gonadal stages
Cited by: 9
Author(s): Laura Soler, Sabine Alves, Aurélien Brionne, Aurore Jacques, Vanessa Guérin, Maëva Cherif--Feildel, Lucie Combes‐Soia, Sophie Fouchécourt, Aurore Thélie, Élisabeth Blesbois, Michael J. McGrew, Valérie Labas, Marina Govoroun
Software Mentions: 3
Published: over 2 years ago

10.1038/s41598-018-33068-9

Spider silk proteome provides insight into the structural characterization of Nephila clavipes flagelliform spidroin
Cited by: 26
Author(s): José Roberto Aparecido dos Santos-Pinto, Helen Andrade Arcuri, Franciele Grego Esteves, Mário Sérgio Palma, Gert Lübec
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0091433

Detection of Viral Proteins in Human Cells Lines by Xeno-Proteomics: Elimination of the Last Valid Excuse for Not Testing Every Cellular Proteome Dataset for Viral Proteins
Cited by: 3
Author(s): Alexey Chernobrovkin, Roman A. Zubarev
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0220568

Delineating the role of FANCA in glucose-stimulated insulin secretion in β cells through its protein interactome
Cited by: 6
Author(s): Dragana Lagundžin, Wen Feng Hu, Henry C.-H. Law, Kimiko L. Krieger, Fangfang Qiao, Emalie J. Clement, Andjela Drincic, Olgica Nedić, Michael J. Naldrett, Sophie Alvarez, Nicholas T. Woods
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0151087

Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli
Cited by: 25
Author(s): P. Javidpour, Samuel Deutsch, Vivek K. Mutalik, Nathan J. Hillson, Young-Mo Kim, Jay D. Keasling, Harry R. Beller
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0149637

Proteome Based Construction of the Lymphocyte Function-Associated Antigen 1 (LFA-1) Interactome in Human Dendritic Cells
Cited by: 2
Author(s): Christina Eich, Edwin Lasonder, Luis J. Cruz, Inge Reinieren-Beeren, Alessandra Cambi, Carl G. Figdor, Sonja I. Buschow
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0045921

Patterns of Information-Seeking for Cancer on the Internet: An Analysis of Real World Data
Cited by: 57
Author(s): Yishai Ofran, Ora Paltiel, Dan Pelleg, Jacob M. Rowe, Elad Yom-Tov
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0228708

Investigating the ferric ion binding site of magnetite biomineralisation protein Mms6
Cited by: 10
Author(s): Andrea E. Rawlings, Panah Liravi, Sybilla Corbett, Alex S. Holehouse, Sarah S. Staniland
Software Mentions: 2
Published: about 4 years ago

10.1111/acel.12261

Exome sequencing of three cases of familial exceptional longevity
Cited by: 14
Author(s): Timothy P. Cash, Guillermo Pita, Orlando Domı́nguez, María R. Alonso, Leticia T. Moreno, Consuelo Borrás, Leocadio Rodrı́guez-Mañas, Catalina Santiago, Nuria Garatachea, Alejandro Lucía, Juan A. Avellana, José Viña, Anna González‐Neira, Manuel Serrano
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12916-021-02071-9

Absolute quantitative proteomics using the total protein approach to identify novel clinical immunohistochemical markers in renal neoplasms
Cited by: 3
Author(s): Susana Jorge, José Luís Capelo, William A. LaFramboise, Swati Satturwar, Dimitrios Korentzelos, Sheldon Bastacky, Gabriela Quiroga‐Garza, Rajiv Dhir, Jacek R. Wiśniewski, Carlos Lodeiro, Hugo M. Santos
Software Mentions: 2
Published: over 2 years ago

10.1371/journal.pone.0113924

IgG Antibodies to Cyclic Citrullinated Peptides Exhibit Profiles Specific in Terms of IgG Subclasses, Fc-Glycans and a Fab-Peptide Sequence
Cited by: 31
Author(s): Susanna L. Lundström, Cátia Fernandes‐Cerqueira, A. Jimmy Ytterberg, Elena Ossipova, Aase Hensvold, Per‐Johan Jakobsson, Vivianne Malmström, Anca I. Catrina, Lars Klareskog, Karin Lundberg, Roman A. Zubarev
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0246548

Urban-rural differences in COVID-19 exposures and outcomes in the South: A preliminary analysis of South Carolina
Cited by: 94
Author(s): Qian Huang, Sarah Jackson, Sahar Derakhshan, Logan Lee, Erika O. Pham, Amber Jackson, Susan L. Cutter
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0021991

A Novel Role of Protein Tyrosine Kinase2 in Mediating Chloride Secretion in Human Airway Epithelial Cells
Cited by: 7
Author(s): Lianchun Liang, Owen M. Woodward, Zhaohui Chen, Robert J. Cotter, William B. Guggino
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0166424

LivePhantom: Retrieving Virtual World Light Data to Real Environments
Cited by: 3
Author(s): Hoshang Kolivand, Mark Billinghurst, Mohd Shahrizal Sunar
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0166119

Protein O-Mannosylation in the Murine Brain: Occurrence of Mono-O-Mannosyl Glycans and Identification of New Substrates
Cited by: 22
Author(s): Markus F. Bartels, Patrick R. Winterhalter, Jin Yu, Yan Liu, Mark Lommel, Frank Möhrlen, Huaiyu Hu, Ten Feizi, Ulrika Westerlind, Thomas Ruppert, Sabine Strahl
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0068914

Social Media Release Increases Dissemination of Original Articles in the Clinical Pain Sciences
Cited by: 162
Author(s): Heidi G. Allen, Tasha R. Stanton, Flavia Di Pietro, G. Lorimer Moseley
Software Mentions: 2
Published: almost 11 years ago