Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.cels.2020.05.003

https://doi.org/10.1016/j.cels.2020.05.003

Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons

Cited by: 24
Author(s): Daria Bunina, Nade Abazova, Nichole Diaz, Kyung‐Min Noh, Jeroen Krijgsveld, Judith B. Zaugg
Published: over 4 years ago

Software Mentions 4

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: DiffBind

Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

pypi: engine

Pure python extensible SQL database engine supporting NULL values. Formally SnakeSQL.
Papers that mentioned: 732