Ecosyste.ms: Papers

10.15252/emmm.201809443

<scp>PDX</scp> models recapitulate the genetic and epigenetic landscape of pediatric T‐cell leukemia
Cited by: 35
Author(s): Paulina Richter-Pechańska, Joachim Kunz, Beat Bornhäuser, Caroline Von Knebel Doeberitz, Tobias Rausch, Büşra Erarslan-Uysal, Yassen Assenov, Viktoras Frismantas, Blerim Marovca, Sebastian M. Waszak, Martin Zimmermann, Julia Seemann, Margit Happich, Martin Stanulla, Martin Schrappe, Gunnar Cario, Gabriele Escherich, Kseniya Bakharevich, Renate Kirschner-Schwabe, Cornelia Eckert, Martina U. Muckenthaler, Jan O. Korbel, Jean‐Pierre Bourquin, Andreas E. Kulozik
Software Mentions: 12
Published: over 5 years ago

10.1002/humu.23772

eDiVA—Classification and prioritization of pathogenic variants for clinical diagnostics
Cited by: 15
Author(s): Mattia Bosio, Oliver Drechsel, Rubayte Rahman, Francesc Muyas, Raquel Rabionet, Daniela Bezdan, Laura Domènech, Hyun‐Gyu Hor, Jean‐Jacques Schott, Francina Munell, Roger Colobran, Alfons Macaya, Xavier Estivill, Stephan Ossowski
Software Mentions: 7
Published: almost 5 years ago

10.1093/bib/bbt086

Comparison of software packages for detecting differential expression in RNA-seq studies
Cited by: 317
Author(s): Fatemeh Seyednasrollah, Asta Laiho, Laura L. Elo
Software Mentions: 7
Published: over 10 years ago

10.3389/fmed.2021.598382

Non-invasive Diagnostic Tests in Cystic Fibrosis-Related Liver Disease: A Diagnostic Test Accuracy Network Meta-Analysis
Cited by: 2
Author(s): Ágnes Rita Martonosi, Alexandra Soós, Zoltán Rumbus, Péter Hegyi, V. Izsák, Piroska Pázmány, Marcell Imrei, Szilárd Váncsa, Zsolt Szakács, Andrea Párniczky
Software Mentions: 7
Published: almost 3 years ago

10.1111/eva.13248

Genomic data support management of anadromous Arctic Char fisheries in Nunavik by highlighting neutral and putatively adaptive genetic variation
Cited by: 11
Author(s): Xavier Dallaire, Éric Normandeau, Julien Mainguy, Jean‐Éric Tremblay, Louis Bernatchez, Jean‐Sébastien Moore
Software Mentions: 7
Published: almost 3 years ago

10.15252/msb.20177974

Systematic characterization of pan‐cancer mutation clusters
Cited by: 31
Author(s): Marija Buljan, Peter Blattmann, Ruedi Aebersold, Michael Boutros
Software Mentions: 6
Published: about 6 years ago

10.1111/jcmm.14991

Mutational landscape and genetic signatures of cell‐free DNA in tumour‐induced osteomalacia
Cited by: 2
Author(s): Nan Wu, Zhen Zhang, Xi Zhou, Hengqiang Zhao, Yue Ming, Xue Wu, Xian Zhang, Xinzhuang Yang, Meng Zhou, Hua Bao, Weisheng Chen, Yong Wu, Sen Liu, Huizi Wang, Yuchen Niu, Yalun Li, Yu Zheng, Yang Shao, Na Gao, Ying Yang, Ying Liu, Wenli Li, Jia Liu, Na Zhang, Yang Xu, Yuan Xu, Mei Li, Yingli Sun, Jianzhong Su, Jianguo Zhang, Weibo Xia, Guixing Qiu, Yong Liu, Jiaqi Liu, Zhihong Wu
Software Mentions: 6
Published: about 4 years ago

10.1186/1471-2105-13-S16-S10

A tutorial in displaying mass spectrometry-based proteomic data using heat maps
Cited by: 47
Author(s): Melissa Key
Software Mentions: 6
Published: over 11 years ago

10.1371/journal.pone.0232313

Suitability of resampled multispectral datasets for mapping flowering plants in the Kenyan savannah
Cited by: 0
Author(s): David Masereti Makori, Elfatih M. Abdel‐Rahman, Tobias Landmann, Onisimo Mutanga, John Odindi, Evelyn Masereti Nguku, Henri E. Z. Tonnang, Satish Raina
Software Mentions: 5
Published: over 3 years ago

10.1089/ast.2018.1912

Assessing the Acceptability of Science Operations Concepts and the Level of Mission Enhancement of Capabilities for Human Mars Exploration Extravehicular Activity
Cited by: 11
Author(s): K. Beaton, Steven P. Chappell, Andrew F. J. Abercromby, Matthew J. Miller, S. E. Kobs Nawotniak, A. L. Brady, Adam H. Stevens, Samuel J. Payler, S. S. Hughes, D. S. S. Lim
Software Mentions: 5
Published: about 5 years ago

10.1002/mgg3.1106

Structural analysis of pathogenic missense mutations in <i>GABRA2</i> and identification of a novel de novo variant in the desensitization gate
Cited by: 7
Author(s): Alba Sanchis‐Juan, Marcia Anahí Hasenahuer, James Alexander Baker, Amy McTague, Katy Barwick, Manju A. Kurian, Sofia Duarte, Nihr BioResource, Keren Carss, Janet M. Thornton, F. Lucy Raymond
Software Mentions: 5
Published: about 4 years ago

10.1186/s13321-016-0115-9

MetFrag relaunched: incorporating strategies beyond in silico fragmentation
Cited by: 597
Author(s): Christoph Ruttkies, Emma L. Schymanski, Sebastian I. Wolf, Juliane Hollender, Steffen Neumann
Software Mentions: 5
Published: over 8 years ago

10.3390/diagnostics10050271

The Effects of Early Bispectral Index to Predict Poor Neurological Function in Cardiac Arrest Patients: A Systematic Review and Meta-Analysis
Cited by: 5
Author(s): Chun-Yu Chang, Chien‐Sheng Chen, Yung-Jiun Chien, Po‐Chen Lin, Meng‐Yu Wu
Software Mentions: 5
Published: about 4 years ago

10.1111/eva.12338

Whole genome sequencing shows sleeping sickness relapse is due to parasite regrowth and not reinfection
Cited by: 11
Author(s): Joshua B. Richardson, Benjamin R. Evans, Pati Patient Pyana, Nick Van Reet, Mark Sistrom, P. Büscher, Serap Aksoy, Adalgisa Caccone
Software Mentions: 4
Published: over 8 years ago

10.3390/s16050645

An Integrated Simulation Module for Cyber-Physical Automation Systems
Cited by: 18
Author(s): Francesco Ferracuti, Alessandro Freddi, Andrea Monteriù, Mariorosario Prist
Software Mentions: 4
Published: about 8 years ago

10.3389/fmolb.2019.00044

Integration of Random Forest Classifiers and Deep Convolutional Neural Networks for Classification and Biomolecular Modeling of Cancer Driver Mutations
Cited by: 34
Author(s): Steve Agajanian, Oluyemi Odeyemi, Gennady M. Verkhivker
Software Mentions: 4
Published: almost 5 years ago

10.3390/s21051794

Multi-U-Net: Residual Module under Multisensory Field and Attention Mechanism Based Optimized U-Net for VHR Image Semantic Segmentation
Cited by: 6
Author(s): Si Ran, Jianli Ding, Bohua Liu, Xiangyu Ge, Guolin Ma
Software Mentions: 4
Published: about 3 years ago

10.1128/mSystems.00284-18

Systems-Level Analysis of Oxygen Exposure in <i>Zymomonas mobilis</i> : Implications for Isoprenoid Production
Cited by: 22
Author(s): Julia Martien, Alexander S. Hebert, David Stevenson, Matthew Regner, Daven B. Khana, Joshua J. Coon, Daniel Amador‐Noguez
Software Mentions: 4
Published: about 5 years ago

10.1007/s00120-021-01476-x

Formen der Evidenzsynthese
Cited by: 0
Author(s): Sebastian Gräf, Jennifer Kranz, Stefanie Schmidt, Laura Bellut, Annemarie Uhlig
Software Mentions: 4
Published: about 3 years ago

10.7554/eLife.08904

Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals
Cited by: 57
Author(s): Alex de Mendoza, Hiroshi Suga, Joan Permanyer, Manuel Irimia, Iñaki Ruiz‐Trillo
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0228687

Pre-analytical error for three point of care venous blood testing platforms in acute ambulatory settings: A mixed methods service evaluation
Cited by: 3
Author(s): Thomas R Fanshawe, Margaret Glogowska, George Edwards, P Turner, Ian Smith, Rosie Steele, Caroline Croxson, John M. Bowen, Gail Hayward
Software Mentions: 4
Published: over 4 years ago

10.3390/cancers13102306

Evidence of Cooperation between Hippo Pathway and RAS Mutation in Thyroid Carcinomas
Cited by: 3
Author(s): Thaise Nayane Ribeiro Carneiro, Larissa Valdemarin Bim, Vanessa Candiotti Buzatto, Vanessa Galdeno, Paula Fontes Asprino, Eunjung Alice Lee, Pedro A. F. Galante, Janete M. Cerutti
Software Mentions: 4
Published: about 3 years ago

10.1002/cam4.3649

Integration of comprehensive genomic profiling, tumor mutational burden, and PD‐L1 expression to identify novel biomarkers of immunotherapy in non‐small cell lung cancer
Cited by: 43
Author(s): Yunfei Shi, Youming Lei, Li Liu, Shiyue Zhang, Wenjing Wang, Juan Zhao, Shuaiguo Zhao, Xiaowei Dong, Ming Yao, Kai Wang, Qing Zhou
Software Mentions: 4
Published: about 3 years ago

10.3390/s20247289

On the Fidelity of NS-3 Simulations of Wireless Multipath TCP Connections
Cited by: 3
Author(s): Monika Prakash, Atef Abdrabou
Software Mentions: 4
Published: over 3 years ago

10.1007/s10270-016-0519-z

Dual deep modeling: multi-level modeling with dual potencies and its formalization in F-Logic
Cited by: 18
Author(s): Bernd Neumayr, Christoph G. Schuetz, Manfred A. Jeusfeld, Michael Schrefl
Software Mentions: 4
Published: about 8 years ago

10.1186/s12920-018-0320-7

Efficient strategy for the molecular diagnosis of intractable early-onset epilepsy using targeted gene sequencing
Cited by: 41
Author(s): John Hoon Rim, Se Hee Kim, In Sik Hwang, Soon Sung Kwon, Jieun Kim, Hyun Woo Kim, Min Jung Cho, Ara Ko, Song Ee Youn, Kim Ji-Hun, Young Mock Lee, Hee Jung Chung, Joon Soo Lee, Heung Dong Kim, Jong Rak Choi, Seung Tae Lee, Hoon Chul Kang
Software Mentions: 4
Published: over 6 years ago

10.1002/mgg3.1346

Dysregulated expression of androgen metabolism genes and genetic analysis in hypospadias
Cited by: 7
Author(s): Zhongzhong Chen, Xiaoling Lin, Yaping Wang, Hua Xie, Fang Chen
Software Mentions: 4
Published: almost 4 years ago

10.1002/mgg3.214

Computational assessment of feature combinations for pathogenic variant prediction
Cited by: 12
Author(s): Eva König, Johannes Michael Rainer, Francisco S. Domingues
Software Mentions: 4
Published: about 8 years ago

10.1111/eva.12660

Impact of supplementation on deleterious mutation distribution in an exploited salmonid
Cited by: 26
Author(s): Anne‐Laure Ferchaud, Martin Laporte, Charles Perrier, Louis Bernatchez
Software Mentions: 4
Published: almost 6 years ago

10.3389/fcvm.2020.00008

Protein Subdomain Enrichment of NUP155 Variants Identify a Novel Predicted Pathogenic Hotspot
Cited by: 2
Author(s): Riley J Leonard, Claudia C. Preston, Melanie E Gucwa, Yohannes Afeworki Tecleab, Arielle Selya, Randolph S. Faustino
Software Mentions: 3
Published: over 4 years ago

10.1002/mgg3.267

A molecular analysis of the<i>GBA</i>gene in Caucasian South Africans with Parkinson's disease
Cited by: 13
Author(s): Melinda Barkhuizen, David G. Anderson, Francois H. van der Westhuizen, Anne Grobler
Software Mentions: 3
Published: over 7 years ago

10.1002/cti2.1292

Genetic risk for severe COVID‐19 correlates with lower inflammatory marker levels in a SARS‐CoV‐2‐negative cohort
Cited by: 4
Author(s): Timothy R. Powell, Matthew Hotopf, Stephani L. Hatch, Gerome Breen, Rodrigo R.R. Duarte, Douglas F. Nixon
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-020-3439-4

Variant effect predictions capture some aspects of deep mutational scanning experiments
Cited by: 24
Author(s): Jonas Reeb, Theresa Wirth, Burkhard Rost
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-021-04002-0

Accelerated global sensitivity analysis of genome-wide constraint-based metabolic models
Cited by: 3
Author(s): Marco S. Nobile, Vasco Coelho, Dario Pescini, Chiara Damiani
Software Mentions: 3
Published: about 3 years ago

10.7554/eLife.63167

High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox
Cited by: 10
Author(s): Rémi Allio, Marie‐Ka Tilak, Céline Scornavacca, Nico L. Avenant, Andrew C. Kitchener, Erwan Corre, Benoît Nabholz, Frédéric Delsuc
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2164-16-S10-S1

Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer
Cited by: 59
Author(s): Ruth Davidson, Pranjal Vachaspati, Siavash Mirarab, Tandy Warnow
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0059624

Etiology and Audiological Outcomes at 3 Years for 364 Children in Australia
Cited by: 44
Author(s): Hans Henrik M. Dahl, Teresa Y. C. Ching, Wendy Hutchison, Sanna Hou, Mark Seeto, Jessica Sjahalam-King
Software Mentions: 3
Published: about 11 years ago

10.1186/s12964-016-0142-1

Normalization of TAM post-receptor signaling reveals a cell invasive signature for Axl tyrosine kinase
Cited by: 26
Author(s): Stanley Kimani, Sushil Kumar, Viralkumar Davra, Yun‐Juan Chang, Canan Kasikara, Ke Geng, Wen-I Tsou, Shenyan Wang, Mainul Hoque, Andrej Boháč, Anita Lewis-Antes, Mariana S. De Lorenzo, Sergei V. Kotenko, Raymond B. Birge
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0192499

Active BRAF-V600E is the key player in generation of a sessile serrated polyp-specific DNA methylation profile
Cited by: 16
Author(s): Somaye Dehghanizadeh, Vahid Khoddami, Timothy Mosbruger, Saher Sue Hammoud, Kornelia Edes, Therese S. Berry, Michelle W. Done, Wade S. Samowitz, James A. DiSario, Daniel G. Luba, Randall W. Burt, David A. Jones
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.11888

Physiological changes and transcript identification in <i>Coreopsis tinctoria</i> Nutt. in early stages of salt stress
Cited by: 1
Author(s): Hong Jiang, Zhiyuan Li, Xiumei Jiang, Yong Qin
Software Mentions: 3
Published: almost 3 years ago

10.3390/ijms221910493

Discovery and Validation of Lmj_04_BRCT Domain, a Novel Therapeutic Target: Identification of Candidate Drugs for Leishmaniasis
Cited by: 6
Author(s): José Peña-Guerrero, Celia Fernández-Rubio, Aroia Burguete-Mikeo, Rima El-Dirany, Alfonso T. García-Sosa, Paul A. Nguewa
Software Mentions: 3
Published: over 2 years ago

10.15252/emmm.201708515

<scp>PATL</scp> 2 is a key actor of oocyte maturation whose invalidation causes infertility in women and mice
Cited by: 52
Author(s): Marie Christou‐Kent, Zine‐Eddine Kherraf, Amir Amiri‐Yekta, Emilie Le Blévec, Thomas Karaouzène, Béatrice Conne, Jessica Escoffier, Saïd Assou, Audrey Guttin, Emeline Lambert, Guillaume Martinez, Magalie Boguenet, Sélima Fourati Ben Mustapha, Isabelle Cédrin Durnerin, Lazhar Halouani, Ouafi Marrakchi, Mounir Makni, Habib Latrous, Mahmoud Kharouf, Charles Coutton, Nicolas Thierry‐Mieg, Serge Nef, Serge P. Bottari, Raoudha Zouari, Jean-Paul Issartel, Pierre F. Ray, Christophe Arnoult
Software Mentions: 3
Published: about 6 years ago

10.1097/MD.0000000000026756

Salivary peptest for laryngopharyngeal reflux and gastroesophageal reflux disease
Cited by: 4
Author(s): Zihao Guo, Jiali Jiang, Hao Wu, Jinxia Zhu, Shutian Zhang, Chuan Zhang
Software Mentions: 3
Published: almost 3 years ago

10.1186/1471-2105-11-455

Next generation tools for genomic data generation, distribution, and visualization
Cited by: 46
Author(s): David A. Nix, Tonya L Di Sera, Brian Dalley, Brett Milash, Robert M Cundick, Kevin S Quinn, Samir Courdy
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0140749

A Non-Synonymous HMGA2 Variant Decreases Height in Shetland Ponies and Other Small Horses
Cited by: 47
Author(s): Mirjam Frischknecht, Vidhya Jagannathan, Philippe Plattet, Markus Neuditschko, Heidi Signer-Hasler, Iris Bachmann, Alicja Pacholewska, Cord Drögemüller, Elisabeth Dietschi, Christine Flury, Stefan Rieder, Tosso Leeb
Software Mentions: 3
Published: over 8 years ago

10.15252/msb.20177908

A framework for exhaustively mapping functional missense variants
Cited by: 130
Author(s): Jochen Weile, Song Sun, Atina G. Coté, Jennifer J. Knapp, Marta Verby, Joseph Mellor, Yingzhou Wu, Carles Pons, Cassandra Wong, Natascha van Lieshout, Fan Yang, Murat Taşan, Guihong Tan, Shan Yang, Douglas M. Fowler, Robert L. Nussbaum, Jesse D Bloom, Marc Vidal, David E. Hill, Patrick Aloy, Frederick P. Roth
Software Mentions: 3
Published: over 6 years ago

10.15252/msb.202010016

hu.MAP 2.0: integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies
Cited by: 60
Author(s): Kevin Drew, John B. Wallingford, Edward M. Marcotte
Software Mentions: 3
Published: about 3 years ago

10.1002/humu.24140

New variants and in silico analyses in GRK1 associated Oguchi disease
Cited by: 7
Author(s): James A. Poulter, Molly S. C. Gravett, Rachel L. Taylor, Kaoru Fujinami, Julie De Zaeytijd, James Bellingham, Atta Ur Rehman, Takaaki Hayashi, Mineo Kondo, Abdur Rehman, Muhammad Ansar, Dan Donnelly, Carmel Toomes, Manir Ali, Elfride De Baere, Bart P. Leroy, Nigel Davies, Robert Henderson, Andrew R. Webster, Carlo Rivolta, Omar Abdul Rahman Mahroo, Gavin Arno, Graeme C M Black, Martin McKibbin, Sarah A. Harris, Kamron Khan, Chris F. Inglehearn
Software Mentions: 3
Published: over 3 years ago

10.3390/s19122791

Receiver-Side TCP Countermeasure in Cellular Networks
Cited by: 6
Author(s): Pingping Dong, Kai Gao, Jing Xie, Wensheng Tang, Naixue Xiong, Athanasios V. Vasilakos
Software Mentions: 3
Published: almost 5 years ago

10.1186/1471-2105-11-464

Sigma-2: Multiple sequence alignment of non-coding DNA via an evolutionary model
Cited by: 3
Author(s): Gayathri Jayaraman, Rahul Siddharthan
Software Mentions: 3
Published: over 13 years ago

10.1136/jmedgenet-2020-107003

Assessing performance of pathogenicity predictors using clinically relevant variant datasets
Cited by: 45
Author(s): Adam C. Gunning, Verity Fryer, James Fasham, Andrew H. Crosby, Sian Ellard, Emma L. Baple, Caroline F. Wright
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-018-37699-w

The EZH2 SANT1 domain is a histone reader providing sensitivity to the modification state of the H4 tail
Cited by: 15
Author(s): Tyler Weaver, Jiachen Liu, Katelyn E. Connelly, Chris Coble, Katayoun Varzavand, Emily C. Dykhuizen, Catherine A. Musselman
Software Mentions: 3
Published: over 5 years ago

10.1038/srep21851

Mineral resources prospecting by synthetic application of TM/ETM+, Quickbird and Hyperion data in the Hatu area, West Junggar, Xinjiang, China
Cited by: 20
Author(s): Lei Liu, Jun Zhou, Dong Jiang, Dafang Zhuang, Lamin R. Mansaray, Zhijun Hu, Zhengbao Ji
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-019-52444-7

A specific fungal transcription factor controls effector gene expression and orchestrates the establishment of the necrotrophic pathogen lifestyle on wheat
Cited by: 27
Author(s): Darcy A. B. Jones, Evan John, Kasia Rybak, H. Phan, Karam B. Singh, Shao-Yu Lin, Peter S. Solomon, Richard P. Oliver, Kar‐Chun Tan
Software Mentions: 3
Published: over 4 years ago

10.1186/s13073-016-0390-0

iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes
Cited by: 46
Author(s): Chengliang Dong, Yunfei Guo, Hui Yang, Zhike He, Xiaoming Liu, Kai Wang
Software Mentions: 3
Published: over 7 years ago

10.1002/mgg3.1571

Compound hemizygous variants in <i>SERPINA7</i> gene cause thyroxine‐binding globulin deficiency
Cited by: 3
Author(s): Yuan Fang, Hong Chen, Qingqing Chen, Chunlin Wang, Li Liang
Software Mentions: 3
Published: over 3 years ago

10.1002/mgg3.1463

Rare and novel variants of <i>PRKN</i> and <i>PINK1</i> genes in Vietnamese patients with early‐onset Parkinson’s disease
Cited by: 7
Author(s): Nguyễn Đăng Tôn, Nguyễn Đức Thuận, Ma Thị Huyền Thương, Trần Thị Ngọc, Vũ Phương Nhung, Nguyễn Thị Hoa, Nguyễn Hoài Nam, Hoang Thi Dung, Nhu Dinh Son, Nguyen Van Ba, Nguyen Duy Bac, Trần Ngọc Tài, Le Thi Kim Dung, Nguyễn Duy Hùng, Nguyễn Thùy Dương, Nguyễn Hải Hà, Nông Văn Hải
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0243639

The hallmarks of childhood abuse and neglect: A systematic review
Cited by: 15
Author(s): Jason Lang, Daniel M. Kerr, Papoula Petri-Romão, Tracey McKee, Helen Smith, Naomi Wilson, Marianna Zavrou, Paul G. Shiels, Helen Minnis
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-81280-x

Genetic variants of small airways and interstitial pulmonary disease in children
Cited by: 3
Author(s): Mohammed T. Alsamri, Amnah Alabdouli, Alia M. Alkalbani, Durdana Iram, Mohamed Tawil, Priya Antony, Ranjit Vijayan, Abdul‐Kader Souid
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2164-16-S10-S3

ASTRID: Accurate Species TRees from Internode Distances
Cited by: 153
Author(s): Pranjal Vachaspati, Tandy Warnow
Software Mentions: 3
Published: over 8 years ago

10.3389/fnagi.2016.00115

AMD Genetics in India: The Missing Links
Cited by: 5
Author(s): Akshay Anand, Kaushal Sharma, Suresh Sharma, Ramandeep Singh, Neel Sharma, T. S. Keshava Prasad
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12872-016-0311-6

Diagnostic accuracy of cardiovascular magnetic resonance for patients with suspected cardiac amyloidosis: a systematic review and meta-analysis
Cited by: 90
Author(s): Lei Zhao, Zhuang Tian, Quan Fang
Software Mentions: 2
Published: almost 8 years ago

10.3389/fnagi.2020.574023

Acupuncture for the Treatment of Alzheimer's Disease: An Overview of Systematic Reviews
Cited by: 20
Author(s): Jinke Huang, Min Shen, Xiaohui Qin, Mei Wu, Simin Liang, Yong Huang
Software Mentions: 2
Published: over 3 years ago

10.1111/eva.12863

Resolving the genetic paradox of invasions: Preadapted genomes and postintroduction hybridization of bigheaded carps in the Mississippi River Basin
Cited by: 16
Author(s): Chenghui Wang, Sarah Gaughan, James T. Lamer, Cao Deng, Wanting Hu, Michael Wachholtz, Siyu Qin, Hongtao Nie, Xiaolin Liao, Qufei Ling, Weitao Li, Lifeng Zhu, Louis Bernatchez, Chenghui Wang, Guoqing Lu
Software Mentions: 2
Published: over 4 years ago

10.1111/ejn.14579

Symmetric patterns with different luminance polarity (anti‐symmetry) generate an automatic response in extrastriate cortex
Cited by: 5
Author(s): Alexis D. J. Makin, Giulia Rampone, Marco Bertamini
Software Mentions: 2
Published: over 4 years ago

10.1111/eva.12607

Prediction of deleterious mutations in coding regions of mammals with transfer learning
Cited by: 13
Author(s): Elena Plekhanova, Sergey V. Nuzhdin, Lev V. Utkin, Maria Samsonova
Software Mentions: 2
Published: about 6 years ago

10.1186/s12883-020-01873-3

Novel imaging and clinical phenotypes of CONDSIAS disorder caused by a homozygous frameshift variant of ADPRHL2: a case report
Cited by: 12
Author(s): Hajar Aryan, Ehsan Razmara, Dariush D. Farhud, Marjan Zarif-Yeganeh, Shaghayegh Zokaei, Seyed Abbas Hassani, Mahmoud Reza Ashrafi, Masoud Garshasbi, Ali Reza Tavasoli
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12860-020-00252-7

In silico analysis of non-synonymous single nucleotide polymorphisms (nsSNPs) in the human GJA3 gene associated with congenital cataract
Cited by: 35
Author(s): Mingzhou Zhang, Chen Huang, Zhenyu Wang, Huibin Lv, Xuemin Li
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2407-13-314

Diagnostic accuracy of circulating tumor cells detection in gastric cancer: systematic review and meta-analysis
Cited by: 31
Author(s): Lanhua Tang, Shushan Zhao, Wei Liu, Nicholas Parchim, Jin Huang, Youhong Tang, Pingping Gan, Meizuo Zhong
Software Mentions: 2
Published: almost 11 years ago

10.3389/fcvm.2021.589267

The Effects of Tai Chi Exercise Among Adults With Chronic Heart Failure: An Overview of Systematic Review and Meta-Analysis
Cited by: 14
Author(s): Jinke Huang, Xiaohui Qin, Min Shen, Yingqi Xu, Yong Huang
Software Mentions: 2
Published: about 3 years ago

10.1186/s12881-015-0176-z

Assessment of the predictive accuracy of five in silico prediction tools, alone or in combination, and two metaservers to classify long QT syndrome gene mutations
Cited by: 73
Author(s): Ivone Leong, Alexander Stuckey, Daniel Lai, Jonathan R. Skinner, Donald R. Love
Software Mentions: 2
Published: about 9 years ago

10.1186/s12859-020-03650-y

FluConvert and IniFlu: a suite of integrated software to identify novel signatures of emerging influenza viruses with increasing risk
Cited by: 2
Author(s): Chin-Rur Yang, Chwan-Chuen King, Liyu Liu, Chia-Chi Ku
Software Mentions: 2
Published: almost 4 years ago

10.15252/emmm.201707729

Altered metabolic landscape in <scp>IDH</scp> ‐mutant gliomas affects phospholipid, energy, and oxidative stress pathways
Cited by: 105
Author(s): Fred Fack, Saverio Tardito, G Hochart, Anaïs Oudin, Liang Zheng, Sabrina Fritah, Anna Golebiewska, Petr V. Nazarov, Amandine Bernard, Ann-Christin Hau, Olivier Keunen, William P. J. Leenders, Morten Lund‐Johansen, Jonathan Stauber, Eyal Gottlieb, Rolf Bjerkvig, Simone P. Niclou
Software Mentions: 2
Published: over 6 years ago

10.1186/s12881-017-0377-8

A novel MTTT mutation m.15933G > A revealed in analysis of mitochondrial DNA in patients with suspected mitochondrial disease
Cited by: 2
Author(s): Heidi K. Soini, Antti Väisänen, Mikko Kärppä, Reetta Hinttala, Laura Kytövuori, Jukka S. Moilanen, Johanna Uusimaa, Kari Majamaa
Software Mentions: 2
Published: over 7 years ago

10.1002/ccr3.1693

A novel<i>FBN2</i>mutation cosegregates with congenital contractural arachnodactyly in a five-generation Chinese family
Cited by: 3
Author(s): Shuyao Zhou, Feng‐Yu Wang, Yongheng Dou, Jack G. Zhou, Gefang Hao, Chengqi Xu, Qing Kenneth Wang, Haili Wang, Pengyun Wang
Software Mentions: 2
Published: almost 6 years ago

10.1097/MD.0000000000024572

Acupuncture therapy on chronic fatigue syndrome based on radar plot
Cited by: 1
Author(s): Lina Tang, Taijun Jiang, Li Zhou, ZHengkang Liu, Xi Wu
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0232786

Dynamics of IgM and IgG responses to the next generation of engineered Duffy binding protein II immunogen: Strain-specific and strain-transcending immune responses over a nine-year period
Cited by: 7
Author(s): Camila Maia Pantuzzo Medeiros, Eduardo U. M. Moreira, Camilla Valente Pires, Letícia M. Torres, Luiz Felipe Ferreira Guimarães, Jéssica R. S. Alves, Bárbara A. S. Lima, Cor Jésus Fernandes Fontes, Helena L. Costa, Cristiana Ferreira Alves de Brito, Taís Nóbrega de Sousa, Francis B. Ntumngia, John H. Adams, Flora Satiko Kano, Luzia H. Carvalho
Software Mentions: 2
Published: about 4 years ago

10.1111/anec.12840

Young and early‐onset dilated cardiomyopathy with malignant ventricular arrhythmia and sudden cardiac death induced by the heterozygous LDB3, MYH6, and SYNE1 missense mutations
Cited by: 9
Author(s): Ting Zhao, Yuting Ma, Zuoquan Zhang, Jing Xian, Xiaojing Geng, Feng Wang, Jiana Huang, Zhe Yang, Yi Luo, Yenn‐Jiang Lin
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0217620

Multiple rare and common variants in APOB gene locus associated with oxidatively modified low-density lipoprotein levels
Cited by: 8
Author(s): Eleonora Khlebus, В. А. Куценко, А. Н. Мешков, А. И. Ершова, А. В. Киселева, Anton Shevtsov, Natalia Shcherbakova, Anastasia A. Zharikova, В. З. Ланкин, А. К. Тихазе, И Е Чазова, E. B. Yarovaya, О. М. Drapkina, S. А. Boytsov
Software Mentions: 2
Published: almost 5 years ago

10.1161/CIRCGEN.120.003155

Bayesian Inference Associates Rare <i>KDR</i> Variants With Specific Phenotypes in Pulmonary Arterial Hypertension
Cited by: 24
Author(s): Emilia M. Swietlik, Daniel Greene, Na Zhu, Karyn Mégy, Marcella Cogliano, Smitha Rajaram, Divya Pandya, Tobias Tilly, Katie A. Lutz, Carrie L. Welch, Michael W. Pauciulo, Laura Southgate, Jennifer Martin, Carmen Treacy, Christopher J. Penkett, Jonathan Stephens, Harm Jan Bogaard, Colin Church, Gerry Coghlan, Alan Coleman, Robin Condliffe, Christina A. Eichstaedt, Mélanie Eyries, Henning Gall, Stefano Ghio, Barbara Girerd, Ekkehard Grünig, Simon Holden, Luke Howard, Marc Humbert, David G. Kiely, Gabòr Kovàcs, Jim Lordan, Rajiv D. Machado, Robert V. MacKenzie Ross, Colm McCabe, Shahin Moledina, David Montani, Horst Olschewski, Joanna Pepke‐Zaba, Laura Price, Christopher J. Rhodes, Werner Seeger, Florent Soubrier, Jay Suntharalingam, Mark Toshner, Anton Vonk‐Noordegraaf, John Wharton, Jim M. Wild, Stephen J. Wort, Allan Lawrie, Martin R. Wilkins, Richard Trembath, Yufeng Shen, Wendy K. Chung, Andrew J. Swift, William C. Nichols, Nicholas W. Morrell, Stefan Gräf
Software Mentions: 2
Published: over 3 years ago

10.1111/cen.13121

<i><scp>GCK</scp></i> gene mutations are a common cause of childhood‐onset <scp>MODY</scp> (maturity‐onset diabetes of the young) in Turkey
Cited by: 18
Author(s): Belma Haliloğlu, Gerald Hysenaj, Zeynep Atay, Tülay Güran, Saygın Abalı, Serap Turan, Abdullah Bereket, Sian Ellard
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0033104

Treelength Optimization for Phylogeny Estimation
Cited by: 5
Author(s): Kevin Liu, Tandy Warnow
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0088745

MicroRNA-92a as a Potential Biomarker in Diagnosis of Colorectal Cancer: A Systematic Review and Meta-Analysis
Cited by: 44
Author(s): Xin Yang, Zongyue Zeng, Yixuan Hou, Taixian Yuan, Chao Gao, Wei Hua Jia, Xiaoyan Yi, Manran Liu
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0248571

Psoriatic arthritis screening: A systematic literature review and experts’ recommendations
Cited by: 9
Author(s): Ana Urruticoechea‐Arana, D. Benavent, Fernando Crespo León, Raquel Almodóvar, I. Belinchón, Pablo de la Cueva, Cristina Fernández‐Carballido, Estíbaliz Loza, Jordi Gratacós
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0104000

Mutation of the Melastatin-Related Cation Channel, TRPM3, Underlies Inherited Cataract and Glaucoma
Cited by: 37
Author(s): T. Bennett, Donna S. Mackay, Carla J. Siegfried, Alan Shiels
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0215006

Integrative analysis of long noncoding RNA and mRNA reveals candidate lncRNAs responsible for meat quality at different physiological stages in Gushi chicken
Cited by: 18
Author(s): Donghua Li, Fang Li, Keren Jiang, Meng Zhang, Ruili Han, Ruirui Jiang, Zhuanjian Li, Yadong Tian, Fengbin Yan, Xiangtao Kang, Guirong Sun
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0126349

Comprehensive Analysis of a Vibrio parahaemolyticus Strain Extracellular Serine Protease VpSP37
Cited by: 16
Author(s): Monica Salamone, Aldo Nicosia, Carmelo Bennici, Paola Quatrini, Valentina Catania, S. Mazzola, Giulio Ghersi, Angela Cuttitta
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0195971

Accurate prediction of functional, structural, and stability changes in PITX2 mutations using in silico bioinformatics algorithms
Cited by: 33
Author(s): Morteza Seifi, Michael A. Walter
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2105-14-190

Utilizing protein structure to identify non-random somatic mutations
Cited by: 47
Author(s): Gregory A. Ryslik, Yu‐Wei Cheng, Kei‐Hoi Cheung, Yorgo Modis, Hongyu Zhao
Software Mentions: 2
Published: almost 11 years ago

10.1002/cam4.2376

Assessment on clinical value of prostate health index in the diagnosis of prostate cancer
Cited by: 8
Author(s): Guangying Zhang, Yanyan Li, Chao Li, Na Li, Zhanzhan Li, Qin Zhou
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pcbi.1007749

Complementary computational and experimental evaluation of missense variants in the ROMK potassium channel
Cited by: 4
Author(s): Luca Ponzoni, Nga H. Nguyen, İvet Bahar, Jeffrey L. Brodsky
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2164-14-S3-S7

Assessment of computational methods for predicting the effects of missense mutations in human cancers
Cited by: 147
Author(s): Florian Gnad, Albion Baucom, Kiran Mukhyala, Gerard Manning, Zemin Zhang
Software Mentions: 2
Published: about 11 years ago

10.1186/s12881-018-0693-7

Novel mutations of PKD genes in Chinese patients suffering from autosomal dominant polycystic kidney disease and seeking assisted reproduction
Cited by: 9
Author(s): Wen‐Bin He, Wenjuan Xiao, Yue‐Qiu Tan, Xinyi Zhao, Wen Li, Qianjun Zhang, Chang-gao Zhong, Xiurong Li, Liang Hu, Guangxiu Lu, Ge Lin
Software Mentions: 2
Published: over 5 years ago

10.1186/s12936-016-1139-3

Genotyping of Plasmodium vivax by minisatellite marker and its application in differentiating relapse and new infection
Cited by: 4
Author(s): Ram Das, R. C. Dhiman, Deepali Savargaonkar, Anupkumar R. Anvikar, Neena Valecha
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0222891

Are trials of psychological and psychosocial interventions for schizophrenia and psychosis included in the NICE guidelines pragmatic? A systematic review
Cited by: 11
Author(s): Chiara Gastaldon, Franziska Mosler, Sarah Toner, Federico Tedeschi, Victoria Bird, Corrado Barbui, Stefan Priebe
Software Mentions: 2
Published: over 4 years ago

10.1186/s13058-016-0772-7

Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities
Cited by: 6
Author(s): Sara Lindström, Akweley Ablorh, Brad Chapman, Alexander Gusev, Gary Chen, Constance Turman, A. Heather Eliassen, Alkes L. Price, Brian E. Henderson, Loı̈c Le Marchand, Oliver Hofmann, Christopher A. Haiman, Peter Kraft
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.7667

Computational analysis of functional SNPs in Alzheimer’s disease-associated endocytosis genes
Cited by: 5
Author(s): Han Jieh Tey, Chong Han Ng
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1002709

Disease-Associated Mutations Disrupt Functionally Important Regions of Intrinsic Protein Disorder
Cited by: 121
Author(s): Vladimir Vacic, Phineus R. L. Markwick, Christopher J. Oldfield, Xiaoyue Zhao, Chad Haynes, Vladimir N. Uversky, Lilia M. Iakoucheva
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0188760

A hierarchical detection method in external communication for self-driving vehicles based on TDMA
Cited by: 12
Author(s): Khattab M. Ali Alheeti, Muzhir Shaban Al-Ani, Klaus McDonald-Maier
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0119118

Transcriptomic Analysis of the Underground Renewal Buds during Dormancy Transition and Release in ‘Hangbaishao’ Peony (Paeonia lactiflora)
Cited by: 15
Author(s): Jiaping Zhang, Yun Wu, Danqing Li, Guanqun Wang, Xin Li
Software Mentions: 2
Published: about 9 years ago