Ecosyste.ms: Papers

10.3390/ijms22031190

Genome-Wide DNA Methylation Analysis of a Cohort of 41 Patients Affected by Oculo-Auriculo-Vertebral Spectrum (OAVS)
Cited by: 12
Author(s): Valentina Guida, Luciano Calzari, Maria Teresa Fadda, Francesca Piceci‐Sparascio, María Cristina Digilio, Laura Bernardini, Francesco Brancati, Teresa Mattina, Daniela Melis, Francesca Forzano, Silvana Briuglia, Tommaso Mazza, Sebastiano Bianca, Enza Maria Valente, Leila Bagherjad Salehi, Paolo Prontera, Mario Pagnoni, Romano Tenconi, Bruno Dallapiccola, Giorgio Iannetti, Luigi Corsaro, Alessandro De Luca, Davide Gentilini
Software Mentions: 10
Published: over 3 years ago

10.1038/s41598-020-74647-z

Passive acoustic listening stations (PALS) show rapid onset of ecological effects of harmful algal blooms in real time
Cited by: 9
Author(s): Athena M. Rycyk, Reny B. Tyson Moore, Randall S. Wells, Katherine McHugh, Elizabeth J. Berens McCabe, David A. Mann
Software Mentions: 9
Published: over 3 years ago

10.1186/s13321-019-0338-7

Software solutions for evaluation and visualization of laser ablation inductively coupled plasma mass spectrometry imaging (LA-ICP-MSI) data: a short overview
Cited by: 30
Author(s): Ralf Weiskirchen, Sabine Weiskirchen, Philipp Kim, Robert Winkler
Software Mentions: 7
Published: over 5 years ago

10.1155/2016/9185496

Lncident: A Tool for Rapid Identification of Long Noncoding RNAs Utilizing Sequence Intrinsic Composition and Open Reading Frame Information
Cited by: 12
Author(s): Siyu Han, Yanchun Liang, Ying Liu, Wei Du
Software Mentions: 6
Published: over 8 years ago

10.1099/ijsem.0.003956

Genome-based analyses reveal a synonymy among Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996, Halorubrum terrestre Ventosa et al. 2004, Halorubrum arcis Xu et al. 2007 and Halorubrum litoreum Cui et al. 2007. Emended description of Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996
Cited by: 13
Author(s): Carmen Infante-Domínguez, Rafael R. de la Haba, Paulina Corral, Cristina Sánchez‐Porro, David R. Arahal, António Ventosa
Software Mentions: 5
Published: about 4 years ago

10.1186/s12864-021-07787-9

The CCCH zinc finger family of soybean (Glycine max L.): genome-wide identification, expression, domestication, GWAS and haplotype analysis
Cited by: 9
Author(s): Xin Hu, Jian‐Fang Zuo
Software Mentions: 5
Published: almost 3 years ago

10.3389/fmicb.2018.02077

Revisiting the Taxonomy of the Genus Arcobacter: Getting Order From the Chaos
Cited by: 237
Author(s): Alba Pérez-Cataluña, Nuria Salas-Massó, Ana L. Diéguez, Sabela Balboa, Alberto Lema, Jesús L. Romalde, María José Figueras
Software Mentions: 5
Published: over 5 years ago

10.1038/s41437-020-0295-y

Multiscale landscape genetics of American marten at their southern range periphery
Cited by: 10
Author(s): Cody M. Aylward, James D. Murdoch, C. William Kilpatrick
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0077563

Meeting Community Health Worker Needs for Maternal Health Care Service Delivery Using Appropriate Mobile Technologies in Ethiopia
Cited by: 80
Author(s): Alex G. Little, Araya Abrha Medhanyie, Henock Yebyo, Mark Spigt, Geert‐Jan Dinant, R. Blanco
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-020-67562-w

Climate and atmospheric deposition effects on forest water-use efficiency and nitrogen availability across Britain
Cited by: 16
Author(s): Rossella Guerrieri, Elena Vanguelova, Rona Pitman, Sue Benham, Mike Perks, J. I. L. Morison, Maurizio Mencuccini
Software Mentions: 4
Published: almost 4 years ago

10.1155/2020/1949415

Serum Irisin Levels, Endothelial Dysfunction, and Inflammation in Pediatric Patients with Type 2 Diabetes Mellitus and Metabolic Syndrome
Cited by: 21
Author(s): Anna Sofia Huerta Delgado, Daniel N Roffe-Vazquez, Adrian M. Gonzalez‐Gil, José R Villarreal-Calderón, Oscar Tamez-Rivera, Nora A. Rodríguez-Gutiérrez, Elena C. Castillo, Christian Silva-Platas, Gerardo García‐Rivas, Leticia Elizondo‐Montemayor
Software Mentions: 4
Published: over 3 years ago

10.7717/peerj-cs.564

Overview of current state of research on the application of artificial intelligence techniques for COVID-19
Cited by: 35
Author(s): Vijay Kumar, Dilbag Singh, Manjit Kaur, Robertas Damaševičius
Software Mentions: 4
Published: almost 3 years ago

10.1172/jci.insight.143289

LncRNA DRAIR is downregulated in diabetic monocytes and modulates inflammatory phenotype via epigenetic mechanisms
Cited by: 15
Author(s): Marpadga A. Reddy, Vishnu Amaram, Sadhan Das, Vinay Singh Tanwar, Rituparna Ganguly, Mei Wang, Linda Lanting, Lingxiao Zhang, Maryam Abdollahi, Zhuo Chen, Xiwei Wu, Sridevi Devaraj, Rama Natarajan
Software Mentions: 4
Published: about 3 years ago

10.1186/s13321-018-0258-y

Mordred: a molecular descriptor calculator
Cited by: 528
Author(s): Hirotomo Moriwaki, Yinbao Tian, Norihito Kawashita, Tatsuya Takagi
Software Mentions: 3
Published: over 6 years ago

10.34172/jcvtr.2020.30

Presence of ear lobe crease may predict intermediate and high-risk patients with acute non-ST elevation acute coronary syndrome
Cited by: 4
Author(s): Muzaffer Kahyaoğlu, Çetin Geçmen, Özkan Candan, Murat Gücün, Ahmet Karaduman, Ahmet Güner, Ender Özgün Çakmak, Emrah Bayam, Yusuf Yılmaz, Mehmet Çelık, İbrahim Akın İzgi
Software Mentions: 3
Published: over 3 years ago

10.1038/s41597-019-0044-3

Harmonising topographic & remotely sensed datasets, a reference dataset for shoreline and beach change analysis
Cited by: 16
Author(s): John Pollard, Susan Brooks, Tom Spencer
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-018-27474-2

A Canonical Biophysical Model of the CsrA Global Regulator Suggests Flexible Regulator-Target Interactions
Cited by: 7
Author(s): Abigail N. Leistra, Grant Gelderman, Steven W. Sowa, Alex Moon-Walker, Howard M. Salis, Lydia M. Contreras
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0027816

Proteomic Signatures of Human Oral Epithelial Cells in HIV-Infected Subjects
Cited by: 23
Author(s): Elizabeth Yohannes, Santosh K. Ghosh, Bin Jiang, Thomas S. McCormick, Aaron Weinberg, Edward M. Hill, Faddy Faddoul, Mark R. Chance
Software Mentions: 3
Published: over 12 years ago

10.1186/s13073-016-0391-z

ClinGen Pathogenicity Calculator: a configurable system for assessing pathogenicity of genetic variants
Cited by: 50
Author(s): Ronak Y. Patel, Neethu Shah, Andrew Jackson, Rajarshi Ghosh, Piotr Pawliczek, Sameer Paithankar, Aaron Baker, Kevin Riehle, Hailin Chen, Sofia Milosavljevic, Chris Bizon, Shawn Rynearson, Tristan Nelson, Gail P. Jarvik, Heidi L. Rehm, Steven M. Harrison, Danielle R. Azzariti, Bradford C. Powell, Larry Babb, Sharon E. Plon, Aleksandar Milosavljevic
Software Mentions: 3
Published: over 7 years ago

10.1099/mgen.0.000265

Insertion sequences drive the emergence of a highly adapted human pathogen
Cited by: 18
Author(s): Erwin Sentausa, Pauline Basso, Alice Berry, Annie Adrait, Gwendoline Bellement, Yohann Couté, Stephen Lory, Sylvie Elsen, Ina Attrée
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0184486

Process-driven and biological characterisation and mapping of seabed habitats sensitive to trawling
Cited by: 19
Author(s): Aurélie Foveau, Sandrine Vaz, Nicolas Desroy, Vladimir E. Kostylev
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0218014

A standardised framework to identify optimal animal models for efficacy assessment in drug development
Cited by: 40
Author(s): Guilherme S. Ferreira, Désirée H. Veening-Griffioen, Wouter Boon, Ellen H.M. Moors, Christine C. Gispen‐de Wied, Huub Schellekens, Peter J.K. van Meer
Software Mentions: 3
Published: almost 5 years ago

10.3389/fphys.2017.00997

Modest Static Pressure Suppresses Columnar Epithelial Cell Growth in Association with Cell Shape and Cytoskeletal Modifications
Cited by: 7
Author(s): Man Hagiyama, Norikazu Yabuta, Daisuke Okuzaki, Takao Inoué, Yasutoshi Takashima, Ryuichiro Kimura, Aritoshi Ri, Akihiko Ito
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-82125-3

Broad specificity of immune helminth scFv library to identify monoclonal antibodies targeting Strongyloides
Cited by: 9
Author(s): Anizah Rahumatullah, Dinesh Balachandra, Rahmah Noordin, Zamrina Baharudeen, Yee Ying Lim, Yee Siew Choong, Theam Soon Lim
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2020.00016

Genome-Wide DNA Methylation Patterns in Persistent Attention-Deficit/Hyperactivity Disorder and in Association With Impulsive and Callous Traits
Cited by: 25
Author(s): Michiel Meijer, Marieke Klein, Eilís Hannon, Dennis van der Meer, Catharina A. Hartman, Jaap Oosterlaan, Dirk J. Heslenfeld, Pieter J. Hoekstra, Jan K. Buitelaar, Jonathan Mill, Barbara Franke
Software Mentions: 3
Published: over 4 years ago

10.1155/2016/3686380

Small Incision Lenticule Extraction for Postkeratoplasty Myopia and Astigmatism
Cited by: 5
Author(s): Tamer Massoud, Osama Ibrahim, Kitty Shehata, Moones Abdalla
Software Mentions: 3
Published: over 8 years ago

10.3389/fncel.2018.00098

Studying Axon-Astrocyte Functional Interactions by 3D Two-Photon Ca2+ Imaging: A Practical Guide to Experiments and “Big Data” Analysis
Cited by: 13
Author(s): Iaroslav Savtchouk, Giovanni Carriero, Andrea Volterra
Software Mentions: 3
Published: about 6 years ago

10.1155/2020/4340930

The GRACE Scale in the Prognosis of Patients with Takotsubo Syndrome
Cited by: 3
Author(s): Małgorzata Zalewska-Adamiec, Łukasz Kuźma, Sławomir Dobrzycki, Hanna Bachórzewska−Gajewska
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-020-07272-9

Genome-wide identification and characterization of long non-coding RNAs related to grain yield in foxtail millet [Setaria italica (L.) P. Beauv.]
Cited by: 5
Author(s): Zilong Zhao, Dan Liu, Yanjiao Cui, Suying Li, Dan Liang, Daizhen Sun, Jianhe Wang, Zhengli Liu
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0082341

Targeting a Cross-Reactive Gly m 5 Soy Peptide as Responsible for Hypersensitivity Reactions in a Milk Allergy Mouse Model
Cited by: 21
Author(s): Renata Curciarello, Paola Lorena Smaldini, Ángela María Candreva, Vicente Ferreira González, Gustavo Parisi, Ana Cauerhff, Ivana Analía Barrios, Luis Enrique Bruno Blanch, Carlos A. Fossati, Silvana Petruccelli, Guillermo Horacio Docena
Software Mentions: 3
Published: over 10 years ago

10.1007/s13205-016-0408-8

A molecular phylogenetic framework for Bacillus subtilis using genome sequences and its application to Bacillus subtilis subspecies stecoris strain D7XPN1, an isolate from a commercial food-waste degrading bioreactor
Cited by: 11
Author(s): Joseph Adelskov, Bharat K. C. Patel
Software Mentions: 3
Published: about 8 years ago

10.7554/eLife.19466

Origin and evolution of transporter substrate specificity within the NPF family
Cited by: 78
Author(s): Morten Jørgensen, Deyang Xu, Christoph Crocoll, Heidi A. Ernst, David Ramírez, Mohammed Saddik Motawia, Carl Erik Olsen, Osman Mirza, Hussam Hassan Nour-Eldin
Software Mentions: 3
Published: about 7 years ago

10.3390/s21155024

Improving the Screen Exploration of Smartphones Using Haptic Icons for Visually Impaired Users
Cited by: 3
Author(s): Francisco Javier González-Cañete, José Luís López-Rodríguez, Pedro María Galdón, A. Díaz-Estrella
Software Mentions: 3
Published: almost 3 years ago

10.1016/j.ijcha.2015.06.009

Risk stratification in non-ST elevation acute coronary syndromes: Risk scores, biomarkers and clinical judgment
Cited by: 16
Author(s): David Corcoran, Patrick E. Grant
Software Mentions: 3
Published: over 8 years ago

10.7554/eLife.22037

Operon mRNAs are organized into ORF-centric structures that predict translation efficiency
Cited by: 119
Author(s): David H Burkhardt, Silvi Rouskin, Yan Zhang, Gene-Wei Li, Jonathan S. Weissman, Carol A. Gross
Software Mentions: 3
Published: over 7 years ago

10.3390/biom11050738

Metabolomics-Guided Hypothesis Generation for Mechanisms of Intestinal Protection by Live Biotherapeutic Products
Cited by: 11
Author(s): Jiayu Ye, Lauren A. E. Erland, Sandeep Singh Gill, Stephanie L. Bishop, Andrea Verdugo‐Meza, Susan J. Murch, Deanna L. Gibson
Software Mentions: 3
Published: about 3 years ago

10.1038/srep32965

Predicting the synergy of multiple stress effects
Cited by: 157
Author(s): Matthias Liess, Kaarina Foit, Saskia Knillmann, Ralf B. Schäfer, Hans-Dieter Ließ
Software Mentions: 3
Published: over 7 years ago

10.3389/fgene.2019.00561

Genome-Wide Identification and Homoeologous Expression Analysis of PP2C Genes in Wheat (Triticum aestivum L.)
Cited by: 44
Author(s): Xiao‐Lan Yu, Jiapeng Han, Efan Wang, Jie Xiao, Rui Hu, Guangxiao Yang, Guoqing He
Software Mentions: 3
Published: almost 5 years ago

10.3390/cells8060623

Functionally Significant Features in the 5′ Untranslated Region of the ABCA1 Gene and Their Comparison in Vertebrates
Cited by: 10
Author(s): Pavel Dvořák, Sarah Leupen, Pavel Souček
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41419-019-1331-9

Long noncoding RNA EGFR-AS1 promotes cell growth and metastasis via affecting HuR mediated mRNA stability of EGFR in renal cancer
Cited by: 95
Author(s): Anbang Wang, Yi Bao, Zhenjie Wu, Tangliang Zhao, Dong Wang, Jianhui Shi, Bing Liu, Shuhan Sun, Fusheng Yang, Linhui Wang, Le Qu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41419-020-2557-2

LncRNA SNORD3A specifically sensitizes breast cancer cells to 5-FU by sponging miR-185-5p to enhance UMPS expression
Cited by: 31
Author(s): Li Luo, Jianlei Zhang, Hailin Tang, Dongfeng Zhai, Dongzhou Huang, Ling Li, Xiaorong Wang, Ting Liu, Qiong Zhang, Zhijie Zhang, Zhiwei He, Guopei Zheng
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0040059

Exposure of Soil Microbial Communities to Chromium and Arsenic Alters Their Diversity and Structure
Cited by: 223
Author(s): Cody S. Sheik, Tyler W. Mitchell, Fariha Zakria Rizvi, Yasir Rehman, Muhammad Faisal, Shahida Hasnain, Michael J. McInerney, Lee R. Krumholz
Software Mentions: 3
Published: almost 12 years ago

10.1111/j.1462-2920.2008.01706.x

probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity
Cited by: 175
Author(s): Alexander Loy, Roland Arnold, Patrick Tischler, Thomas Rattei, Michael Wagner, Matthias Horn
Software Mentions: 3
Published: over 15 years ago

10.1073/pnas.1818575116

Mapping visual symbols onto spoken language along the ventral visual stream
Cited by: 34
Author(s): Joanne Taylor, Matthew H. Davis, Kathleen Rastle
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13321-019-0356-5

Leveraging heterogeneous data from GHS toxicity annotations, molecular and protein target descriptors and Tox21 assay readouts to predict and rationalise acute toxicity
Cited by: 5
Author(s): Chad H. G. Allen, Lewis Mervin, Samar Mahmoud, Andreas Bender
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-019-6410-x

Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
Cited by: 15
Author(s): Nikolaos Strepis, Henry D. Naranjo, Jan P. Meier‐Kolthoff, Markus Göker, Nicole Shapiro, Nikos C. Kyrpides, Hans‐Peter Klenk, Peter J. Schaap, Alfons Johannes Maria Stams, Diana Z. Sousa
Software Mentions: 2
Published: over 4 years ago

10.1128/JB.00460-18

Connecting the Dots between Mechanosensitive Channel Abundance, Osmotic Shock, and Survival at Single-Cell Resolution
Cited by: 11
Author(s): Griffin Chure, Heun Jin Lee, Akiko Rasmussen, Rob Phillips
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-017-3942-9

Characterization of the cytochrome P450 monooxygenase genes (P450ome) from the carotenogenic yeast Xanthophyllomyces dendrorhous
Cited by: 29
Author(s): Pamela Córdova, A Scheidegger Gonzalez, David R. Nelson, María-Soledad Gutiérrez, Marcelo Baeza, Víctor Cifuentes, Jennifer Alcaı́no
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep24739

Crystal Structures and Binding Dynamics of Odorant-Binding Protein 3 from two aphid species Megoura viciae and Nasonovia ribisnigri
Cited by: 51
Author(s): T. Northey, Herbert Venthur, Filomena De Biasio, F.-X. Chauviac, A.R. Cole, Karlos Antônio Lisboa Ribeiro, Gerarda Grossi, Patrizia Falabella, L. M. Field, Nicholas H. Keep, Jing‐Jiang Zhou
Software Mentions: 2
Published: about 8 years ago

10.1186/s12870-017-1004-8

Identification and analysis of the stigma and embryo sac-preferential/specific genes in rice pistils
Cited by: 9
Author(s): Li Yu, Tengfei Ma, Yuqin Zhang, Ying Hu, Ke Yu, Yueyue Chen, Hongwei Ma, Zhao Jie
Software Mentions: 2
Published: about 7 years ago

10.1186/s13059-014-0512-1

Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice
Cited by: 427
Author(s): Yuchan Zhang, Jian-You Liao, Ze-Yuan Li, Yang Yu, Jinping Zhang, Quanfeng Li, Liang‐Hu Qu, Wen‐Sheng Shu, Yue‐Qin Chen
Software Mentions: 2
Published: over 9 years ago

10.1186/s12870-017-1208-y

Polyamines in the life of Arabidopsis: profiling the expression of S-adenosylmethionine decarboxylase (SAMDC) gene family during its life cycle
Cited by: 27
Author(s): Rajtilak Majumdar, Lin Shao, Swathi A. Turlapati, Subhash C. Minocha
Software Mentions: 2
Published: over 6 years ago

10.1186/s12870-017-1105-4

B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)
Cited by: 55
Author(s): Yunpeng Cao, Yuepeng Han, Dong Meng, Dahui Li, Jiao Chen, Qing Jin, Yi Lin, Yongping Cai
Software Mentions: 2
Published: over 6 years ago

10.1007/s11657-021-00881-1

Five-year fracture risk assessment in postmenopausal women, using both the POL-RISK calculator and the Garvan nomogram: the Silesia Osteo Active Study
Cited by: 3
Author(s): Piotr Zagórski, Elżbieta Tabor, Katarzyna Martela-Tomaszek, Piotr Adamczyk, Wojciech Pluskiewicz
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-019-6220-1

Genome-wide DNA methylation analysis of Metarhizium anisopliae during tick mimicked infection condition
Cited by: 13
Author(s): Nicolau Sbaraini, Reinaldo Bellini, Augusto Bartz Penteriche, Rafael Lucas Muniz Guedes, Ane Wichine Acosta Garcia, Alexandra Lehmkuhl Gerber, Marilene Henning Vainstein, Ana Tereza Ribeiro de Vasconcelos, Augusto Schrank, Charley Christian Staats
Software Mentions: 2
Published: over 4 years ago

10.1093/gbe/evz082

DNA Motifs Are Not General Predictors of Recombination in Two Drosophila Sister Species
Cited by: 22
Author(s): James Malcolm Howie, Rupert Mazzucco, Thomas Taus, Viola Nolte, Christian Schlötterer
Software Mentions: 2
Published: about 5 years ago

10.3390/genes9030131

The Unexplored Diversity of Pleolipoviruses: The Surprising Case of Two Viruses with Identical Major Structural Modules
Cited by: 7
Author(s): Nina S. Atanasova, Camilla Heiniö, Tatiana A. Demina, Dennis H. Bamford, Hanna M. Oksanen
Software Mentions: 2
Published: about 6 years ago

10.3390/genes7120109

Divergent Expression Patterns in Two Vernicia Species Revealed the Potential Role of the Hub Gene VmAP2/ERF036 in Resistance to Fusarium oxysporum in Vernicia montana
Cited by: 7
Author(s): Qiyan Zhang, Ming Gao, Liwen Wu, Yangdong Wang, Yicun Chen
Software Mentions: 2
Published: over 7 years ago

10.3390/genes10070537

Genome-Wide Identification and Characterization of Xyloglucan Endotransglycosylase/Hydrolase in Ananas comosus during Development
Cited by: 15
Author(s): Qingyun Li, Huayang Li, Chongyang Yin, Xiaotong Wang, Qing Jiang, Rui Zhang, Fangfang Ge, Yudong Chen, Long Yang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2016.01544

Whole Genome Sequencing Reveals Potential New Targets for Improving Nitrogen Uptake and Utilization in Sorghum bicolor
Cited by: 33
Author(s): Karen Massel, Bradley C. Campbell, Emma Mace, Shuaishuai Tai, Yongfu Tao, Belinda Worland, David R. Jordan, José Ramón Botella, Ian D. Godwin
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-021-07692-1

Transcriptome analysis reveals potential function of long non-coding RNAs in 20-hydroxyecdysone regulated autophagy in Bombyx mori
Cited by: 8
Author(s): Hui Qiao, Jingya Wang, Yuanzhuo Wang, Juanjuan Yang, Bofan Wei, Miaomiao Li, Bo Wang, Xiaozhe Li, Yang Cao, Ling Tian, Dandan Li, Lunguang Yao, Yunchao Kan
Software Mentions: 2
Published: almost 3 years ago

10.3389/fmicb.2020.596719

Genome-Wide Identification and Analysis of Chitinase GH18 Gene Family in Mycogone perniciosa
Cited by: 7
Author(s): Yang Yang, Frederick Leo Sossah, Zhuang Li, Kevin D. Hyde, Dan Li, Shijun Xiao, Yongping Fu, Xiaohui Yuan, Li Yu
Software Mentions: 2
Published: over 3 years ago

10.1186/s12870-020-02530-0

Transcriptome analysis of heat stress and drought stress in pearl millet based on Pacbio full-length transcriptome sequencing
Cited by: 65
Author(s): Min Sun, Dejun Huang, Ailing Zhang, İmran Khan, Haidong Yan, Xiaoshan Wang, Xinquan Zhang, Jian Zhang
Software Mentions: 2
Published: almost 4 years ago

10.3389/fphar.2019.01529

β-Asarone Inhibits Amyloid-β by Promoting Autophagy in a Cell Model of Alzheimer's Disease
Cited by: 42
Author(s): Nanbu Wang, Haoyu Wang, Lingyu Li, Yunchuan Li, Ronghua Zhang
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2016.01619

Gene-Metabolite Networks of Volatile Metabolism in Airen and Tempranillo Grape Cultivars Revealed a Distinct Mechanism of Aroma Bouquet Production
Cited by: 34
Author(s): José L. Rambla, Almudena Trapero-Mozos, Gianfranco Diretto, Ángela Rubio-Moraga, Antonio Granell, Lourdes Gómez-Gómez, Oussama Ahrazem
Software Mentions: 2
Published: over 7 years ago

10.1590/1678-4685-GMB-2019-0064

Extinction and emergence of genomic haplotypes during the evolution of Avian coronavirus in chicken embryos
Cited by: 0
Author(s): Paulo Eduardo Brandão, Aline Santana da Hora, Sheila O. S. Silva, Sueli Akemi Taniwaki, Mikael Berg
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2018.00365

Comparative Transcriptome Profiling of mRNA and lncRNA Related to Tail Adipose Tissues of Sheep
Cited by: 36
Author(s): Lin Ma, Meng Zhang, Yunjiang Jin, Sarantsetseg Erdenee, Linyong Hu, Hong Chen, Yong Cai, Xianyong Lan
Software Mentions: 2
Published: over 5 years ago

10.3389/fendo.2019.00917

Validation of ART Calculator for Predicting the Number of Metaphase II Oocytes Required for Obtaining at Least One Euploid Blastocyst for Transfer in Couples Undergoing in vitro Fertilization/Intracytoplasmic Sperm Injection
Cited by: 23
Author(s): Sandro C. Esteves, Hakan Yaralı́, Filippo Maria Ubaldi, José Ferreira de Carvalho, Fabiola C. Bento, Alberto Vaiarelli, Danilo Cimadomo, Irem Yarali Ozbek, Mehtap Polat, Gürkan Bozdağ, Laura Rienzi, Carlo Alviggi
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2014.00316

Identification of a dinucleotide signature that discriminates coding from non-coding long RNAs
Cited by: 6
Author(s): Damien Ulveling, Marcel E. Dinger, Claire Francastel, Florent Hubé
Software Mentions: 2
Published: over 9 years ago

10.3389/fnagi.2021.641222

Widespread Decreases in Cerebral Copper Are Common to Parkinson's Disease Dementia and Alzheimer's Disease Dementia
Cited by: 17
Author(s): Melissa Scholefield, Stephanie J. Church, Jiaolong Xu, Stefano Patassini, Federico Roncaroli, Nigel M. Hooper, Richard D. Unwin, Garth J. S. Cooper
Software Mentions: 2
Published: about 3 years ago

10.3390/diagnostics11050876

Development of New PCR Assay with SYBR Green I for Detection of Mycoplasma, Acholeplasma, and Ureaplasma sp. in Cell Cultures
Cited by: 3
Author(s): Jolanta Krzysztoń-Russjan, Jakub Chudziak, Małgorzata Bednarek, Elżbieta Anuszewska
Software Mentions: 2
Published: about 3 years ago

10.3389/fbioe.2014.00001

Predicting Translation Initiation Rates for Designing Synthetic Biology
Cited by: 89
Author(s): Benjamin Reeve, Thomas Hargest, Charlie Gilbert, Tom Ellis
Software Mentions: 2
Published: over 10 years ago

10.3389/fgene.2018.00214

Screening of the LAMB2, WT1, NPHS1, and NPHS2 Genes in Pediatric Nephrotic Syndrome
Cited by: 6
Author(s): Aiysha Abid, Saba Shahid, Madiha Shakoor, Ali Lanewala, Seema Hashmi, Shagufta Khaliq
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-017-4052-4

Genome-wide identification of novel intergenic enhancer-like elements: implications in the regulation of transcription in Plasmodium falciparum
Cited by: 10
Author(s): Suyog Ubhe, Mukul Rawat, Srikant Verma, Krishanpal Anamika, Krishanpal Karmodiya
Software Mentions: 2
Published: over 6 years ago

10.1186/s12911-017-0501-x

Utilizing patient data from the veterans administration electronic health record to support web-based clinical decision support: informatics challenges and issues from three clinical domains
Cited by: 14
Author(s): Nallakkandi Rajeevan, Kristina M. Niehoff, Peter Charpentier, Forrest L. Levin, Amy C. Justice, Cynthia Brandt, Terri R. Fried, Perry L. Miller
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.mex.2019.11.001

A simple 3D cellular chemotaxis assay and analysis workflow suitable for a wide range of migrating cells
Cited by: 8
Author(s): Sai Prasanna Visweshwaran, Tanja Maritzen
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0136439

Gene Expression Profiling of Development and Anthocyanin Accumulation in Kiwifruit (Actinidia chinensis) Based on Transcriptome Sequencing
Cited by: 51
Author(s): Wenbin Li, Yifei Liu, Shaohua Zeng, Xiaohua Gong, Gan Wang, Ying Wāng, Ming Peng, Hongwen Huang
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0204981

Evolution reinforces cooperation with the emergence of self-recognition mechanisms: An empirical study of strategies in the Moran process for the iterated prisoner’s dilemma
Cited by: 9
Author(s): Vincent A. Knight, Marc Harper, Nikoleta E. Glynatsi, Owen Campbell
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0257713

Sharing the load: How a personally coloured calculator for grapheme-colour synaesthetes can reduce processing costs
Cited by: 0
Author(s): Joshua J. Berger, Irina M. Harris, Karen M. Whittingham, Zoë Terpening, J. D. G. Watson
Software Mentions: 2
Published: over 2 years ago

10.3390/ani8070127

Identification and Characterization of Long Noncoding RNAs in Ovine Skeletal Muscle
Cited by: 5
Author(s): Qing Li, Ruizao Liu, Haiping Zhao, Ran Di, Zengkui Lu, Enmin Liu, Yuqin Wang, Mingxing Chu, Caihong Wei
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0016490

Assessment of Factors Influencing Morale in the Elderly
Cited by: 33
Author(s): Seng Cheong Loke, Siti Suhailah Abdullah, Sen Chai, Tengku Aizan Hamid, Nurizan Yahaya
Software Mentions: 2
Published: over 13 years ago

10.1016/j.mex.2021.101218

Image analysis-based quantification of fungal sporulation by automatic conidia counting and gray value correlation
Cited by: 6
Author(s): Linda C. Muskat, Yannic Kerkhoff, Pascal Humbert, Tim Wilhelm Nattkemper, Jørgen Eilenberg, Anant Patel
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers12020369

Clinical Decision Support Systems in Breast Cancer: A Systematic Review
Cited by: 46
Author(s): Claudia Mazo, Cathriona Kearns, Catherine Mooney, William M. Gallagher
Software Mentions: 2
Published: over 4 years ago

10.1186/s13034-021-00365-7

Assessing adverse childhood experiences, social, emotional, and behavioral symptoms, and subjective health complaints among Hungarian adolescents
Cited by: 10
Author(s): Beáta Kovács-Tóth, Barnabás Oláh, Gábor Papp, Ildikó Kuritárné Szabó
Software Mentions: 2
Published: about 3 years ago

10.3389/fmicb.2020.00058

Enrichment of Anaerobic Syngas-Converting Communities and Isolation of a Novel Carboxydotrophic Acetobacterium wieringae Strain JM
Cited by: 18
Author(s): Ana Luísa Arantes, João Paulo Carvalho Moreira, Martijn Diender, Sofiya N. Parshina, Alfons Johannes Maria Stams, M. M. Alves, J. I. Alves, Diana Z. Sousa
Software Mentions: 2
Published: over 4 years ago

10.1016/j.carres.2018.04.008

Synthesis of glyceryl glycosides related to A-type prymnesin toxins
Cited by: 4
Author(s): Edward S. Hems, Sergey A. Nepogodiev, Martin Rejzek, Robert A. Field
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-020-07220-7

NGS-Integrator: An efficient tool for combining multiple NGS data tracks using minimum Bayes’ factors
Cited by: 2
Author(s): Bronte Wen, Hyun Jun Jung, Lihe Chen, Fahad Saeed, Mark A. Knepper
Software Mentions: 2
Published: over 3 years ago

10.1186/cc3517

Cited by: 32
Author(s): Zaccaria Ricci, Gabriella Salvatori, Monica Bonello, Tirak Pisitkun, Irene Bolgan, Giuseppe D’Amico, Maurizio Dan, Pasquale Piccinni, Claudio Ronco
Software Mentions: 2
Published: over 19 years ago

10.3390/e22060612

A Review of Methods for Estimating Algorithmic Complexity: Options, Challenges, and New Directions
Cited by: 19
Author(s): Héctor Zenil
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0084263

Functional Annotation of Conserved Hypothetical Proteins from Haemophilus influenzae Rd KW20
Cited by: 74
Author(s): Mohd Shahbaaz, Md. Imtaiyaz Hassan, Faizan Ahmad
Software Mentions: 2
Published: over 10 years ago

10.1186/s12864-018-4974-5

Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period
Cited by: 37
Author(s): Bing Yang, Beilei Jiao, Wei Ge, Xiaolan Zhang, Shanhe Wang, Hang Zhao, Xin Wang
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0064387

An Automated Image Analysis System to Measure and Count Organisms in Laboratory Microcosms
Cited by: 38
Author(s): François Mallard, Vincent Le Bourlot, Thomas N. Tully
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0249658

Koala cathelicidin PhciCath5 has antimicrobial activity, including against Chlamydia pecorum
Cited by: 5
Author(s): Emma Peel, Yuanyuan Cheng, Julianne T. Djordjevic, Denis O’Meally, Mark S. Thomas, Michael Kuhn, Tania C. Sorrell, Wilhelmina M. Huston, Katherine Belov
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0100053

Pre- and Post-Operative Nomograms to Predict Recurrence-Free Probability in Korean Men with Clinically Localized Prostate Cancer
Cited by: 13
Author(s): Minyong Kang, Chang Wook Jeong, Woo Suk Choi, Yong Hyun Park, Sung Yong Cho, Sangchul Lee, Seung Bae Lee, Ja Hyeon Ku, Sung Kyu Hong, Seok‐Soo Byun, Hyeon Jeong, Cheol Kwak, Hyeon Hoe Kim, Eunsik Lee, Sang Eun Lee
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0257708

High-throughput low-cost nl-qPCR for enteropathogen detection: A proof-of-concept among hospitalized patients in Bangladesh
Cited by: 4
Author(s): Katelyn E. Flaherty, Jessica A. Grembi, Vasavi Ramachandran, Farhana Haque, Selina Khatun, Mahmudu Rahman, Stace Maples, Torben K. Becker, Alfred M. Spormann, Gary K. Schoolnik, Andrew J. Hryckowian, Eric J. Nelson
Software Mentions: 2
Published: over 2 years ago

10.3390/biomedicines8100434

Low Dose Astaxanthin Treatments Trigger the Hormesis of Human Astroglioma Cells by Up-Regulating the Cyclin-Dependent Kinase and Down-Regulated the Tumor Suppressor Protein P53
Cited by: 8
Author(s): Juhyun Shin, Ramesh Kumar Saini, Jae-Wook Oh
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0248803

Isotopic evidence for geographic heterogeneity in Ancient Greek military forces
Cited by: 7
Author(s): Katherine L Reinberger, Laurie J Reitsema, Britney Kyle, Stefano Vassallo, George D. Kamenov, John Krigbaum
Software Mentions: 2
Published: about 3 years ago

10.3389/fpls.2015.01136

RNA-Seq Analysis of Rice Roots Reveals the Involvement of Post-Transcriptional Regulation in Response to Cadmium Stress
Cited by: 64
Author(s): Fei He, Qingquan Liu, Zheng Li, Yaqiong Cui, Zhenguo Shen, Luqing Zheng
Software Mentions: 2
Published: over 8 years ago

10.3389/fpubh.2021.637529

Serum Vitamin D Level and the Risk of Urinary Tract Infection in Children: A Systematic Review and Meta-Analysis
Cited by: 5
Author(s): Xiaoyan Li, Qing Yu, Feng Qin, Biyu Zhang, Yanming Lu
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0223736

When calculators lie: A demonstration of uncritical calculator usage among college students and factors that improve performance
Cited by: 3
Author(s): Mark LaCour, Norma G. Cantú, Tyler Davis
Software Mentions: 2
Published: over 4 years ago