pypi: mpi4py | Projects | Ecosyste.ms: Papers

10.3389/fninf.2018.00092

Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0
Cited by: 96
Author(s): Espen Hagen, Solveig Næss, Torbjørn V. Ness, Gaute T. Einevoll
Software Mentions: 12
Published: almost 6 years ago

10.3389/fninf.2013.00041

LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons
Cited by: 121
Author(s): Henrik Lindén, Espen Hagen, Szymon Łȩski, Espen Skjønsberg Norheim, Klas H. Pettersen, Gaute T. Einevoll
Software Mentions: 10
Published: almost 11 years ago

10.1186/1471-2105-13-115

PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools
Cited by: 60
Author(s): Sean O’Callaghan, David P. De Souza, Andrew P. Isaac, Qiao Wang, Luke Hodkinson, Moshe Olshansky, Tim Erwin, Bill Appelbe, Dedreia Tull, Ute Roessner, Antony Bacic, Malcolm J. McConville, Vladimir A Likić
Software Mentions: 6
Published: over 12 years ago

10.1371/journal.pone.0146581

Neurokernel: An Open Source Platform for Emulating the Fruit Fly Brain
Cited by: 21
Author(s): Lev E. Givon, Aurel A. Lazar
Software Mentions: 5
Published: almost 9 years ago

10.1093/gigascience/giy052

Optimized distributed systems achieve significant performance improvement on sorted merging of massive VCF files
Cited by: 3
Author(s): Xiaobo Sun, Jingjing Gao, Peng Jin, Celeste Eng, Esteban G. Burchard, Terri H. Beaty, Ingo Ruczinski, Rasika A. Mathias, Kathleen C. Barnes, Fusheng Wang, Zhaohui S. Qin
Software Mentions: 5
Published: over 6 years ago

10.3390/app10186187

ACDC: Automated Cell Detection and Counting for Time-Lapse Fluorescence Microscopy
Cited by: 7
Author(s): Leonardo Rundo, Andrea Tangherloni, Darren R. Tyson, Riccardo Betta, Carmelo Militello, Simone Spolaor, Marco S. Nobile, Daniela Besozzi, Alexander L R Lubbock, Vito Quaranta, Giancarlo Mauri, Carlos F. López, Paolo Cazzaniga
Software Mentions: 4
Published: about 4 years ago

10.1186/s12859-020-03565-8

ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community
Cited by: 22
Author(s): Tiziana Castrignanò, Silvia Gioiosa, Tiziano Flati, Mirko Cestari, Ernesto Picardi, Matteo Chiara, Maddalena Fratelli, Stefano Amente, Marco Cirilli, M. A. Tangaro, Giovanni Chillemi, Graziano Pesole, Federico Zambelli
Software Mentions: 4
Published: over 4 years ago

10.1107/S1600576719005363

ClickX: a visualization-based program for preprocessing of serial crystallography data
Cited by: 4
Author(s): Xuanxuan Li, Chufeng Li, Haiguang Liu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41597-020-0542-3

A rasterized building footprint dataset for the United States
Cited by: 28
Author(s): Mehdi P. Heris, Leon Foks, Kenneth J. Bagstad, Austin Troy, Zachary H. Ancona
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-021-04002-0

Accelerated global sensitivity analysis of genome-wide constraint-based metabolic models
Cited by: 3
Author(s): Marco S. Nobile, Vasco Coelho, Dario Pescini, Chiara Damiani
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0145180

SPOTting Model Parameters Using a Ready-Made Python Package
Cited by: 113
Author(s): Tobias Houska, Philipp Kraft, Alejandro Chamorro-Chavez, Lutz Breuer
Software Mentions: 3
Published: almost 9 years ago

10.1107/S1600576716007469

OnDA: online data analysis and feedback for serial X-ray imaging
Cited by: 80
Author(s): Valerio Mariani, Andrew J. Morgan, Chun Hong Yoon, Thomas J Lane, Thomas A. White, C. P. O’Grady, Manuela Kuhn, S. Aplin, Jason E. Koglin, Anton Barty, Henry N. Chapman
Software Mentions: 3
Published: over 8 years ago

10.1107/S160057671600995X

WavePropaGator: interactive framework for X-ray free-electron laser optics design and simulations
Cited by: 25
Author(s): Liubov Samoylova, A. V. Buzmakov, Oleg Chubar, H. Sinn
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-78284-4

Optimization and validation of diffusion MRI-based fiber tracking with neural tracer data as a reference
Cited by: 13
Author(s): Carlos Enrique Gutierrez, Henrik Skibbe, Ken Nakae, Hiromichi Tsukada, Jean‐Sylvain Liénard, Akiya Watakabe, Junichi Hata, Marco Reisert, Alexander Woodward, Yoko Yamaguchi, Tetsuo Yamamori, Hideyuki Okano, Shin Ishii, Kenji Doya
Software Mentions: 3
Published: almost 4 years ago

10.1007/s10827-015-0565-5

Reconstruction of recurrent synaptic connectivity of thousands of neurons from simulated spiking activity
Cited by: 41
Author(s): Yury V. Zaytsev, Abigail Morrison, Moritz Deger
Software Mentions: 3
Published: over 9 years ago

10.15252/msb.20199355

Bayesian modeling reveals metabolite‐dependent ultrasensitivity in the cyanobacterial circadian clock
Cited by: 10
Author(s): Hong Li, Danylo Lavrentovich, Archana G. Chavan, Eugene Leypunskiy, Eileen Li, Charles H. Matthews, Andy LiWang, Michael J. Rust, Aaron R. Dinner
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1005930

Biophysical network modeling of the dLGN circuit: Effects of cortical feedback on spatial response properties of relay cells
Cited by: 6
Author(s): Pablo Martínez‐Cañada, Milad Hobbi Mobarhan, Geir Halnes, Marianne Fyhn, Christian A. Morillas, Francisco J. Pelayo, Gaute T. Einevoll
Software Mentions: 2
Published: almost 7 years ago

10.1098/rsta.2014.0398

A high-throughput system for high-quality tomographic reconstruction of large datasets at Diamond Light Source
Cited by: 85
Author(s): Robert C. Atwood, Andrew J. Bodey, Stephen W. T. Price, Mark Basham, Michael Drakopoulos
Software Mentions: 2
Published: over 9 years ago

10.3389/fgene.2019.00417

Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships
Cited by: 17
Author(s): Deborah Weighill, Piet Jones, Carissa Bleker, Priya Ranjan, Manesh Shah, Nan Zhao, Madhavi Z. Martin, Stephen P. DiFazio, David Macaya‐Sanz, Jeremy Schmutz, Avinash Sreedasyam, Timothy J. Tschaplinski, Gerald A. Tuskan, Daniel Jacobson
Software Mentions: 2
Published: over 5 years ago

10.3389/fnhum.2013.00869

Distinguishing mechanisms of gamma frequency oscillations in human current source signals using a computational model of a laminar neocortical network
Cited by: 44
Author(s): Shane Lee, Stephanie R. Jones
Software Mentions: 2
Published: almost 12 years ago

10.3389/fnana.2018.00075

Derivation of Fiber Orientations From Oblique Views Through Human Brain Sections in 3D-Polarized Light Imaging
Cited by: 20
Author(s): Daniel Schmitz, Sascha E.A. Muenzing, Martin Schöber, Nicole Schubert, Martina Minnerop, Thomas Lippert, Katrin Amunts, Markus Axer
Software Mentions: 2
Published: about 6 years ago

10.1186/s12859-020-03562-x

HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis
Cited by: 21
Author(s): Tiziano Flati, Silvia Gioiosa, Nicola Spallanzani, Ilario Tagliaferri, Maria Angela Diroma, Graziano Pesole, Giovanni Chillemi, Ernesto Picardi, Tiziana Castrignanò
Software Mentions: 2
Published: over 4 years ago

10.1186/s13321-019-0358-3

Gypsum-DL: an open-source program for preparing small-molecule libraries for structure-based virtual screening
Cited by: 36
Author(s): Patrick J. Ropp, Jacob O. Spiegel, Jennifer L. Walker, Harrison Green, Guillermo Morales, Katherine A. Milliken, John J. Ringe, Jacob D. Durrant
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms15022672

Paclitaxel Induces Apoptosis in Breast Cancer Cells through Different Calcium—Regulating Mechanisms Depending on External Calcium Conditions
Cited by: 41
Author(s): Zhi Zhong Pan, Andrew Avila, Lauren Gollahon
Software Mentions: 2
Published: almost 11 years ago

10.1107/S2052252516018017

CADEE: Computer-Aided Directed Evolution of Enzymes
Cited by: 40
Author(s): Beat Anton Amrein, Fabian Steffen‐Munsberg, Ireneusz Szeler, Miha Purg, Yashraj Kulkarni, Shina Caroline Lynn Kamerlin
Software Mentions: 2
Published: almost 8 years ago

10.1080/19382014.2018.1493316

Beta-cell hubs maintain Ca2+ oscillations in human and mouse islet simulations
Cited by: 38
Author(s): Chon Lok Lei, Joely A. Kellard, Manami Hara, James D. Johnson, Blanca Rodriguez, Linford J.B. Briant
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1005352

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective
Cited by: 20
Author(s): Julia Chifman, Seda Arat, Zhiyong Deng, Erica Lemler, James C. Pino, Leonard A. Harris, Michael A. Kochen, Carlos F. López, Steven A. Akman, Frank M. Torti, Suzy V. Torti, Reinhard Laubenbacher
Software Mentions: 2
Published: almost 8 years ago

10.1007/s10858-016-0062-9

Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction
Cited by: 13
Author(s): Mark J. Bostock, Daniel J. Holland, Daniel Nietlispach
Software Mentions: 1
Published: about 8 years ago

10.3390/e22050544

Straggler-Aware Distributed Learning: Communication–Computation Latency Trade-Off
Cited by: 28
Author(s): Emre Ozfatura, Şennur Ulukuş, Deniz Gündüz
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.00782

A longitudinal study of Caenorhabditis elegans larvae reveals a novel locomotion switch, regulated by Gαs signaling
Cited by: 28
Author(s): Stanislav Nagy, Charles S. Wright, Nora Tramm, Nicholas P. Labello, Stanislav Burov, David Biron
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-021-86771-5

Computing inelastic neutron scattering spectra from molecular dynamics trajectories
Cited by: 6
Author(s): Thomas F. Harrelson, Makena A. Dettmann, Christoph Scherer, Denis Andrienko, Adam J. Moulé, Roland Faller
Software Mentions: 1
Published: over 3 years ago

Ecosyste.ms: Papers

Projects: pypi: mpi4py

Papers Mentioning mpi4py 31