Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fninf.2018.00092

https://doi.org/10.3389/fninf.2018.00092

Cited by: 96
Author(s): Espen Hagen, Solveig Næss, Torbjørn V. Ness, Gaute T. Einevoll
Published: over 5 years ago

Software Mentions 12

pypi: Cython
The Cython compiler for writing C extensions in the Python language.
Papers that mentioned: 118
pypi: h5py
Read and write HDF5 files from Python
Papers that mentioned: 49
pypi: LFPy
A module for modeling extracellular potentials of multicompartment neuron models built on NEURON
Papers that mentioned: 33
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: mpi4py
Python bindings for MPI
Papers that mentioned: 31
pypi: NESTML
NESTML is a domain specific language that supports the specification of neuron models in a precise and concise syntax, based on the syntax of Python. Model equations can either be given as a simple string of mathematical notation or as an algorithm written in the built-in procedural language. The equations are analyzed by NESTML to compute an exact solution if possible or use an appropriate numeric solver otherwise.
Papers that mentioned: 10
pypi: NEURON
Empirically-based simulator for modeling neurons and networks of neurons
Papers that mentioned: 766
pypi: NeuroTools
NeuroTools is a collection of tools to support all tasks associated with the analysis of neural activity - from neurophysiology to neural simulations.
Papers that mentioned: 10
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: nutmeg
Simple video processing tools using Python with fmpeg
Papers that mentioned: 2
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
pypi: Vertex
Divmod Vertex is the first implementation of the Q2Q protocol, which is a peer-to-peer communication protocol for establishing stream-based communication between named endpoints.
Papers that mentioned: 31