pypi: h5py | Projects | Ecosyste.ms: Papers

10.1186/s40679-016-0031-0

Analyzing microtomography data with Python and the scikit-image library
Cited by: 22
Author(s): Emmanuelle Gouillart, Juan Nunez-Iglesias, Stéfan van der Walt
Software Mentions: 14
Published: almost 8 years ago

10.3389/fninf.2018.00092

Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0
Cited by: 96
Author(s): Espen Hagen, Solveig Næss, Torbjørn V. Ness, Gaute T. Einevoll
Software Mentions: 12
Published: almost 6 years ago

10.3390/ani11020485

Action Recognition Using a Spatial-Temporal Network for Wild Felines
Cited by: 9
Author(s): Liqi Feng, Yaqin Zhao, Yang Sun, Wenxuan Zhao, Jiaxi Tang
Software Mentions: 12
Published: over 3 years ago

10.1038/s41598-020-65015-y

Toffee – a highly efficient, lossless file format for DIA-MS
Cited by: 9
Author(s): Brett Tully
Software Mentions: 11
Published: over 4 years ago

10.3389/fnins.2020.00919

HYGRIP: Full-Stack Characterization of Neurobehavioral Signals (fNIRS, EEG, EMG, Force, and Breathing) During a Bimanual Grip Force Control Task
Cited by: 10
Author(s): Pablo Ortega, Tong Zhao, A. Aldo Faisal
Software Mentions: 11
Published: about 4 years ago

10.1029/2019EA001004

Open‐Source Software Analysis Tool to Investigate Space Plasma Turbulence and Nonlinear DYNamics (ODYN)
Cited by: 6
Author(s): E. Teodorescu, Marius Echim
Software Mentions: 10
Published: over 4 years ago

10.3389/fninf.2013.00041

LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons
Cited by: 121
Author(s): Henrik Lindén, Espen Hagen, Szymon Łȩski, Espen Skjønsberg Norheim, Klas H. Pettersen, Gaute T. Einevoll
Software Mentions: 10
Published: almost 11 years ago

10.1371/journal.pbio.3001341

Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain
Cited by: 3
Author(s): Shaina Lu, Cantin Ortiz, Daniel Fürth, Stephan Fischer, Konstantinos Meletis, Anthony M. Zador, Jesse Gillis
Software Mentions: 8
Published: over 3 years ago

10.1523/ENEURO.0415-20.2021

Real-Time Closed-Loop Feedback in Behavioral Time Scales Using DeepLabCut
Cited by: 17
Author(s): Keisuke Sehara, Paul Zimmer-Harwood, Matthew E. Larkum, Robert N. S. Sachdev
Software Mentions: 8
Published: over 3 years ago

10.1186/s12864-017-4268-3

GHOST: global hepatitis outbreak and surveillance technology
Cited by: 32
Author(s): Atkinson G. Longmire, Seth Sims, Inna Rytsareva, David S. Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, Yury Khudyakov
Software Mentions: 7
Published: almost 7 years ago

10.7554/eLife.53281

Feedback inhibition and its control in an insect olfactory circuit
Cited by: 8
Author(s): Subhasis Ray, Zane Aldworth, Mark Stopfer
Software Mentions: 7
Published: over 4 years ago

10.3389/fninf.2018.00016

Experimental Directory Structure (Exdir): An Alternative to HDF5 Without Introducing a New File Format
Cited by: 14
Author(s): Svenn-Arne Dragly, Milad Hobbi Mobarhan, Mikkel Elle Lepperød, Simen Tennøe, Marianne Fyhn, Torkel Hafting, Anders Malthe‐Sørenssen
Software Mentions: 7
Published: over 6 years ago

10.1038/s41597-019-0261-9

A 2D hyperspectral library of mineral reflectance, from 900 to 2500 nm
Cited by: 7
Author(s): Laurent Fasnacht, Marie-Louise Vogt, Philippe Renard, Philip Brunner
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pcbi.1007973

XDream: Finding preferred stimuli for visual neurons using generative networks and gradient-free optimization
Cited by: 9
Author(s): Will Xiao, Gabriel Kreiman
Software Mentions: 6
Published: over 4 years ago

10.1107/S0907444913000863

New Python-based methods for data processing
Cited by: 92
Author(s): Nicholas K. Sauter, Johan Hattne, Ralf W. Grosse‐Kunstleve, Nathaniel Echols
Software Mentions: 6
Published: over 11 years ago

10.12688/f1000research.5773.3

ActivePapers: a platform for publishing and archiving computer-aided research
Cited by: 11
Author(s): Konrad Hinsen
Software Mentions: 5
Published: over 9 years ago

10.3389/fmolb.2021.624264

Serial Electron Diffraction Data Processing With diffractem and CrystFEL
Cited by: 7
Author(s): Robert Bücker, Pascal Hogan-Lamarre, R. J. Dwayne Miller
Software Mentions: 5
Published: over 3 years ago

10.1186/s12859-019-3103-z

De novo Nanopore read quality improvement using deep learning
Cited by: 9
Author(s): Nathan LaPierre, Rob Egan, Wei Wang, Zhong Wang
Software Mentions: 5
Published: almost 5 years ago

10.1186/s40679-016-0035-9

Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT
Cited by: 63
Author(s): Federica Marone, Alain Studer, Heiner Billich, L. Sala, Marco Stampanoni
Software Mentions: 5
Published: almost 8 years ago

10.7717/peerj-cs.216

DeepMoney: counterfeit money detection using generative adversarial networks
Cited by: 10
Author(s): Toqeer Ali Syed, Salman Jan, Ahmad Alkhodre, Mohammad Nauman, Muhammad Amin, Muhammad Shoaib Siddiqui
Software Mentions: 5
Published: about 5 years ago

10.1186/s40679-016-0037-7

Data systems for the Linac coherent light source
Cited by: 27
Author(s): J. B. Thayer, D. S. Damiani, C. J. B. Ford, M. M. Dubrovin, I. Gaponenko, C.P. O'Grady, W. Kroeger, J. Pines, Thomas J Lane, A. Salnikov, Dieter K. Schneider, T. Tookey, M. Weaver, Chun Hong Yoon, A. Perazzo
Software Mentions: 5
Published: almost 8 years ago

10.12688/f1000research.11022.3

Picopore: A tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality
Cited by: 3
Author(s): Scott Gigante
Software Mentions: 5
Published: about 7 years ago

10.1107/S1600576719012044

DatView: a graphical user interface for visualizing and querying large data sets in serial femtosecond crystallography
Cited by: 1
Author(s): Natasha Stander, Petra Fromme, Nadia A. Zatsepin
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-15-180

PBHoney: identifying genomic variants via long-read discordance and interrupted mapping
Cited by: 135
Author(s): Adam C. English, William Salerno, Jeffrey G. Reid
Software Mentions: 4
Published: over 10 years ago

10.1002/mas.21522

The arc of Mass Spectrometry Exchange Formats is long, but it bends toward HDF5
Cited by: 10
Author(s): Manor Askenazi, Hisham Ben Hamidane, Johannes Graumann
Software Mentions: 4
Published: about 8 years ago

10.1111/ejn.14292

Task‐dependent responses to muscle vibration during reaching
Cited by: 7
Author(s): Johannes Keyser, Rob Ramakers, W. Pieter Medendorp, Luc P. J. Selen
Software Mentions: 4
Published: almost 6 years ago

10.3389/fninf.2014.00015

Data management routines for reproducible research using the G-Node Python Client library
Cited by: 12
Author(s): Andrey Sobolev, Stoewer Adrian, Michael A. Pereira, Christian Johannes Kellner, Christian Garbers, Philipp L. Rautenberg, Thomas Wachtler
Software Mentions: 4
Published: over 10 years ago

10.3390/insects12020097

Anopheles gambiae Genome Conservation as a Resource for Rational Gene Drive Target Site Selection
Cited by: 8
Author(s): Nace Kranjc, Andrea Crisanti, Tony Nolan, Federica Bernardini
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-018-26259-x

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO
Cited by: 22
Author(s): Marie‐Alice Fraiture, Assia Saltykova, Stefan Hoffman, Raf Winand, Dieter Deforce, Kevin Vanneste, Sigrid C. J. De Keersmaecker
Software Mentions: 4
Published: over 6 years ago

10.3389/fninf.2014.00080

SIMA: Python software for analysis of dynamic fluorescence imaging data
Cited by: 155
Author(s): Patrick Kaifosh, Jeffrey D. Zaremba, Nathan Danielson, Attila Losonczy
Software Mentions: 3
Published: about 10 years ago

10.3389/fninf.2016.00049

Pyrcca: Regularized Kernel Canonical Correlation Analysis in Python and Its Applications to Neuroimaging
Cited by: 54
Author(s): Natalia Y. Bilenko, Jack L. Gallant
Software Mentions: 3
Published: almost 8 years ago

10.1038/s42003-021-01786-y

Whole-organ analysis of TGF-β-mediated remodelling of the tumour microenvironment by tissue clearing
Cited by: 12
Author(s): Shimpei I. Kubota, Kei Takahashi, Tomoyuki Mano, Katsuhiko Matsumoto, Takahiro Katsumata, Shoi Shi, Kazuki Tainaka, Hiroki R. Ueda, Shogo Ehata, Kohei Miyazono
Software Mentions: 3
Published: over 3 years ago

10.1093/bioinformatics/btx404

NucliTrack: an integrated nuclei tracking application
Cited by: 23
Author(s): Sam Cooper, Alexis R. Barr, Robert C. Glen, Chris Bakal
Software Mentions: 3
Published: over 7 years ago

10.1107/S160057671600995X

WavePropaGator: interactive framework for X-ray free-electron laser optics design and simulations
Cited by: 25
Author(s): Liubov Samoylova, A. V. Buzmakov, Oleg Chubar, H. Sinn
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-21484-w

Systematic and stochastic influences on the performance of the MinION nanopore sequencer across a range of nucleotide bias
Cited by: 56
Author(s): Raga Krishnakumar, Anupama Sinha, Sara W. Bird, Harikrishnan Jayamohan, Harrison Edwards, Joseph S. Schoeniger, Kamlesh D. Patel, Steven S. Branda, Michael Bartsch
Software Mentions: 3
Published: over 6 years ago

10.1107/S1600576718015145

High-throughput continuous rotation electron diffraction data acquisitionviasoftware automation
Cited by: 110
Author(s): Magdalena Ola Cichocka, Jonas Ångström, Bin Wang, Xiaodong Zou, Stef Smeets
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1002867

Passive Dendrites Enable Single Neurons to Compute Linearly Non-separable Functions
Cited by: 75
Author(s): Romain D. Cazé, Mark D. Humphries, Boris Gutkin
Software Mentions: 3
Published: over 11 years ago

10.1186/s40537-020-00387-6

Analysis and best parameters selection for person recognition based on gait model using CNN algorithm and image augmentation
Cited by: 67
Author(s): Abeer Mohsin Saleh, Talal Hamoud
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41597-019-0019-4

Synthesis, optical imaging, and absorption spectroscopy data for 179072 metal oxides
Cited by: 12
Author(s): Helge S. Stein, Edwin Soedarmadji, Paul F. Newhouse, Dan Guevarra, John M. Gregoire
Software Mentions: 2
Published: over 5 years ago

10.1093/gigascience/giab056

DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
Cited by: 21
Author(s): Shu‐Fang Vivienne Wu, Zhencheng Fang, Jie Tan, Mo Li, Chunhui Wang, Qian Guo, Congmin Xu, Xiaoqing Jiang, Huaiqiu Zhu
Software Mentions: 2
Published: about 3 years ago

10.1098/rsta.2014.0398

A high-throughput system for high-quality tomographic reconstruction of large datasets at Diamond Light Source
Cited by: 85
Author(s): Robert C. Atwood, Andrew J. Bodey, Stephen W. T. Price, Mark Basham, Michael Drakopoulos
Software Mentions: 2
Published: over 9 years ago

10.3390/s21062144

BLAINDER—A Blender AI Add-On for Generation of Semantically Labeled Depth-Sensing Data
Cited by: 19
Author(s): Stefan Reitmann, Lorenzo Neumann, Bernhard Jung
Software Mentions: 2
Published: over 3 years ago

10.1038/s41597-020-0389-7

A voltage and current measurement dataset for plug load appliance identification in households
Cited by: 42
Author(s): Roberto Medico, Leen De Baets, Jingkun Gao, Suman Giri, Emre Kara, Tom Dhaene, Chris Develder, Mario Bergés, Dirk Deschrijver
Software Mentions: 2
Published: over 4 years ago

10.1038/s41597-020-00767-w

CREAM, a component level coffeemaker electrical activity measurement dataset
Cited by: 1
Author(s): Daniel Jorde, Thomas Kriechbaumer, Tim Berger, Stefan Zitzlsperger, Hans‐Arno Jacobsen
Software Mentions: 2
Published: almost 4 years ago

10.1093/bioinformatics/btu026

h5vc: scalable nucleotide tallies with HDF5
Cited by: 3
Author(s): Paul Theodor Pyl, Julian Gehring, Bernd Fischer, Wolfgang Huber
Software Mentions: 2
Published: almost 11 years ago

10.1093/bioinformatics/bty841

BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files
Cited by: 179
Author(s): Alexander Payne, Nadine Holmes, Vardhman K. Rakyan, Matthew Loose
Software Mentions: 1
Published: almost 6 years ago

10.3389/fninf.2018.00100

NFBLab—A Versatile Software for Neurofeedback and Brain-Computer Interface Research
Cited by: 15
Author(s): Nikolai Smetanin, Ksenia Volkova, S. V. Zabodaev, Mikhail А. Lebedev, Alexei Ossadtchi
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.mex.2021.101456

General resource for ionospheric transient investigations (GRITI): An open-source code developed in support of the Dinsmore et al. (2021) results
Cited by: 1
Author(s): Ross L. Dinsmore, J. D. Mathews, Julio Urbina
Software Mentions: 1
Published: almost 4 years ago

10.1038/sdata.2016.126

An extensive dataset of eye movements during viewing of complex images
Cited by: 32
Author(s): Niklas Wilming, Selim Onat, José P. Ossandón, Alper Açık, Tim C. Kietzmann, Kai Kaspar, Ricardo Ramos Gameiro, Vormberg Alexandra, Peter König
Software Mentions: 1
Published: almost 8 years ago

Projects: pypi: h5py

Papers Mentioning h5py 49