Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40679-016-0031-0

https://doi.org/10.1186/s40679-016-0031-0

Analyzing microtomography data with Python and the scikit-image library

Cited by: 22
Author(s): Emmanuelle Gouillart, Juan Nunez-Iglesias, Stéfan van der Walt
Published: almost 8 years ago

Software Mentions 14

cran: Canopy
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
Papers that mentioned: 41
pypi: CellProfiler

Papers that mentioned: 1,504
pypi: Cython
The Cython compiler for writing C extensions in the Python language.
Papers that mentioned: 118
pypi: h5py
Read and write HDF5 files from Python
Papers that mentioned: 49
pypi: image
Django application that provides cropping, resizing, thumbnailing, overlays and masking for images and videos with the ability to set the center of attention,
Papers that mentioned: 212
pypi: imread
imread: Image reading library
Papers that mentioned: 17
pypi: imshow
Command line tool to visualize numeric arrays.
Papers that mentioned: 5
pypi: joblib
Lightweight pipelining with Python functions
Papers that mentioned: 17
pypi: mahotas
Mahotas: Computer Vision Library
Papers that mentioned: 5
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: mayavi
3D scientific data visualization library and application
Papers that mentioned: 4
pypi: pip
The PyPA recommended tool for installing Python packages.
Papers that mentioned: 21
pypi: scikit-image
Image processing in Python
Papers that mentioned: 195
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431