Ecosyste.ms: Papers

10.1111/eva.12965

Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster <i>Crassostrea gigas</i> throughout the Northern Hemisphere
Cited by: 11
Author(s): Ben J. G. Sutherland, Claire Rycroft, Anne‐Laure Ferchaud, Rob Saunders, Li Li, Sheng Liu, Amy M. Chan, Sarah P. Otto, Curtis A. Suttle, Kristina M. Miller
Software Mentions: 13
Published: over 4 years ago

10.1111/eva.13035

Demographic history and genomics of local adaptation in blue tit populations
Cited by: 8
Author(s): Charles Perrier, Quentin Rougemont, Anne Charmantier
Software Mentions: 7
Published: over 4 years ago

10.1002/ece3.6378

Long‐lived marine species may be resilient to environmental variability through a temporal portfolio effect
Cited by: 1
Author(s): Jacek Maselko, Kimberly R. Andrews, Paul A. Hohenlohe
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0243205

Neuropeptide S receptor gene Asn107 polymorphism in obese male individuals in Pakistan
Cited by: 3
Author(s): Aftab Ahmad, Fahad Almsned, Pasha Ghazal, Malik Waqar Ahmed, M. Saleet Jafri, Habib Bokhari
Software Mentions: 5
Published: almost 4 years ago

10.7554/eLife.53008

Functional heterogeneity of lymphocytic patterns in primary melanoma dissected through single-cell multiplexing
Cited by: 39
Author(s): Francesca Maria Bosisio, Asier Antoranz, Yannick Van Herck, Maddalena M. Bolognesi, Lukas Marcelis, Clizia Chinello, Jasper Wouters, Fulvio Magni, Leonidas G. Alexopoulos, Marguerite Stas, Veerle Boecxstaens, Oliver Bechter, Giorgio Cattoretti, Joost van den Oord
Software Mentions: 5
Published: almost 5 years ago

10.1186/1471-2105-13-82

Readjoiner: a fast and memory efficient string graph-based sequence assembler
Cited by: 50
Author(s): Giorgio Gonnella, Stefan Kurtz
Software Mentions: 4
Published: over 12 years ago

10.3389/fpls.2021.730258

One Step Away From Extinction: A Population Genomic Analysis of A Narrow Endemic, Tropical Plant Species
Cited by: 4
Author(s): Thais M. Teixeira, Alison G. Nazareno
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pgen.1009684

An autoimmune disease risk variant: A trans master regulatory effect mediated by IRF1 under immune stimulation?
Cited by: 10
Author(s): Margot Brandt, Sarah Kim-Hellmuth, Marcello Ziosi, Alper Gokden, Aaron Wolman, Nora Lam, Yocelyn Recinos, Zharko Daniloski, John A. Morris, Veit Hornung, Johannes Schumacher, Tuuli Lappalainen
Software Mentions: 3
Published: over 3 years ago

10.1038/s42003-020-01431-0

Fairy circles in Namibia are assembled from genetically distinct grasses
Cited by: 2
Author(s): Christian Kappel, Nicola Illing, Cuong Nguyen Huu, Nichole N. Barger, Michael D. Cramer, Michael Lenhard, Jeremy J. Midgley
Software Mentions: 3
Published: about 4 years ago

10.1111/eva.12534

Applying landscape genomic tools to forest management and restoration of Hawaiian koa (<i>Acacia koa</i>) in a changing environment
Cited by: 40
Author(s): Paul F. Gugger, Christina T. Liang, Victoria L. Sork, Paul D. Hodgskiss, Jessica W. Wright
Software Mentions: 3
Published: about 7 years ago

10.1111/1755-0998.13043

A genomic approach to inferring kinship reveals limited intergenerational dispersal in the yellow fever mosquito
Cited by: 47
Author(s): Moshe Jasper, Thomas L. Schmidt, Nazni Wasi Ahmad, Steven P. Sinkins, Ary A. Hoffmann
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.3274

<scp>RAD</scp> seq dataset with 90% missing data fully resolves recent radiation of <i>Petalidium</i> (Acanthaceae) in the ultra‐arid deserts of Namibia
Cited by: 84
Author(s): Erin A. Tripp, Yi‐Hsin Erica Tsai, Yongbin Zhuang, Kyle G. Dexter
Software Mentions: 2
Published: about 7 years ago

10.1186/1756-0500-4-482

Expedited batch processing and analysis of transposon insertions
Cited by: 3
Author(s): J. D. Smith, David A. Ray
Software Mentions: 2
Published: about 13 years ago

10.1107/S2052252520013007

Beyond integration: modeling every pixel to obtain better structure factors from stills
Cited by: 8
Author(s): Derek Mendez, Robert Bolotovsky, Asmit Bhowmick, Aaron S. Brewster, Jan Kern, Junko Yano, James M. Holton, Nicholas K. Sauter
Software Mentions: 2
Published: about 4 years ago

10.1111/eva.12128

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon ( <i>Oncorhynchus tshawytscha</i> )
Cited by: 180
Author(s): Wesley A. Larson, Lisa W. Seeb, Meredith V. Everett, Ryan K. Waples, William D. Templin, James E. Seeb
Software Mentions: 2
Published: almost 11 years ago

10.1111/eva.13271

The different fates of two Asian horseshoe crab species with different dispersal abilities
Cited by: 2
Author(s): Qian Tang, Prashant Shingate, Yusli Wardiatno, Akbar John, Boon Hui Tay, Y. C. Tay, L. F. Yap, Jasmin Lim, Henry H.Y. Tong, Karenne Tun, Byrappa Venkatesh, Frank E. Rheindt
Software Mentions: 2
Published: over 3 years ago

10.1111/eva.12732

Genomic signatures of introgression between commercial and native bumblebees, <i>Bombus terrestris</i>, in western Iberian Peninsula—Implications for conservation and trade regulation
Cited by: 25
Author(s): Sofia G. Seabra, Sara E. Silva, Vera L. Nunes, Vítor C. Sousa, Joana T. Martins, Eduardo Marabuto, Ana S. B. Rodrigues, Francisco Pina‐Martins, Telma G. Laurentino, María Teresa Rebelo, Elisabete Figueiredo, Octávio S. Paulo
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12863-017-0557-8

Genetic variation in populations of the earthworm, Lumbricus rubellus, across contaminated mine sites
Cited by: 28
Author(s): C. A. Anderson, Luís Cunha, Pierfrancesco Sechi, Peter Kille, David J. Spurgeon
Software Mentions: 2
Published: about 7 years ago

10.3390/genes11101218

Landscape Genomics of a Widely Distributed Snake, Dolichophis caspius (Gmelin, 1789) across Eastern Europe and Western Asia
Cited by: 5
Author(s): Sarita Mahtani-Williams, William C. Fulton, Amélie Desvars-Larrive, Sara Lado, Jean P. Elbers, Bálint Halpern, Dávid Herczeg, Gergely Babocsay, Boris Lauš, Zoltán T. Nagy, Daniel Jablonski, Oleg V. Kukushkin, Pablo Orozco‐terWengel, Judit Vörös, Pamela A. Burger
Software Mentions: 2
Published: about 4 years ago

10.3390/genes12010089

The Impacts of Dam Construction and Removal on the Genetics of Recovering Steelhead (Oncorhynchus mykiss) Populations across the Elwha River Watershed
Cited by: 21
Author(s): Alexandra K. Fraik, John McMillan, Martin Liermann, Todd Bennett, Michael L. McHenry, Garrett J. McKinney, Abigail Wells, Gary A. Winans, Joanna L. Kelley, George R. Pess, Krista M. Nichols
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12992-020-00560-9

Benchmarking the transparency, comprehensiveness and specificity of population nutrition commitments of major food companies in Malaysia
Cited by: 12
Author(s): See Hoe Ng, Gary Sacks, Bridget Kelly, Heather Yeatman, Ella Robinson, Boyd Swinburn, Stefanie Vandevijvere, Karuthan Chinna, Mohd Tahir Ismail, Tilakavati Karupaiah
Software Mentions: 2
Published: over 4 years ago

10.1093/iob/obab020

Differences in Mate Pairings of Hatchery- and Natural-Origin Coho Salmon Inferred from Offspring Genotypes
Cited by: 2
Author(s): Heather L. Auld, David P. Jacobson, Adelaide Rhodes, Michael Banks
Software Mentions: 2
Published: almost 4 years ago

10.1016/S2214-109X(17)30058-X

Socioeconomic status and non-communicable disease behavioural risk factors in low-income and lower-middle-income countries: a systematic review
Cited by: 430
Author(s): Luke Allen, Julianne Williams, Nick Townsend, Bente Mikkelsen, Nia Roberts, Charlie Foster, Kremlin Wickramasinghe
Software Mentions: 2
Published: over 7 years ago

10.1128/genomeA.00579-18

Complete Genome Sequences of Three Bacillus amyloliquefaciens Strains That Inhibit the Growth of Listeria monocytogenes <i>In Vitro</i>
Cited by: 4
Author(s): Thao Dang-Hien Tran, Steven Huynh, Craig T. Parker, Robert Hnasko, Lisa Gorski, Jeffery A. McGarvey
Software Mentions: 1
Published: over 6 years ago

10.1186/s12904-021-00816-0

Cost-utility analysis of palliative care in patients with advanced cancer: a retrospective study
Cited by: 2
Author(s): Hao Wu, Ping Lin, Shujuan Yang, Wei Zhang, Wenjuan Tao
Software Mentions: 1
Published: over 3 years ago

10.3390/ma12142288

Fractal Analysis of the Fracture Evolution of Freeze-Thaw Damage to Asphalt Concrete
Cited by: 15
Author(s): Jun Li, Fengchi Wang, Yi Fu, Jie Ma, Zhenhuan Lin
Software Mentions: 1
Published: over 5 years ago

10.1186/s12931-014-0139-5

Genome-wide mRNA expression profiling in vastus lateralis of COPD patients with low and normal fat free mass index and healthy controls
Cited by: 31
Author(s): Roberto Rabinovich, Ellen Drost, Jonathan Manning, Donald R. Dunbar, M. Carmen Díaz-Ramos, Ramzi Lakhdar, Ricardo Bastos, William MacNee
Software Mentions: 1
Published: almost 10 years ago

10.1073/pnas.2100170118

2′-O methylation of RNA cap in SARS-CoV-2 captured by serial crystallography
Cited by: 41
Author(s): Mateusz Wilamowski, D.A. Sherrell, G. Minasov, Young Chang Kim, L. Shuvalova, Alex Lavens, Ryan Chard, N. Maltseva, R. Jedrzejczak, Mónica Rosas‐Lemus, Nickolaus Saint, Ian Foster, K. Michalska, K.J.F. Satchell, A. Joachimiak
Software Mentions: 1
Published: over 3 years ago

10.1128/genomeA.00027-15

Complete Sequences of Six IncA/C Plasmids of Multidrug-Resistant Salmonella enterica subsp. enterica Serotype Newport
Cited by: 16
Author(s): Guojie Cao, Marc W. Allard, Maria Hoffmann, Steven R. Monday, Tim Muruvanda, Yan Luo, Justin Payne, Lydia V. Rump, Kevin Meng, Shaohua Zhao, Patrick F. McDermott, Eric W. Brown, Jianghong Meng
Software Mentions: 1
Published: over 9 years ago

10.1128/genomeA.00690-15

Complete Genome Sequence of Salmonella enterica subsp. <i>enterica</i> Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United States
Cited by: 12
Author(s): Maria Hoffmann, Justin L. Payne, Richard J. Roberts, Marc W. Allard, Eric W. Brown, James B. Pettengill
Software Mentions: 1
Published: about 9 years ago