pypi: ipynb | Projects | Ecosyste.ms: Papers

10.3389/fnins.2020.00919

HYGRIP: Full-Stack Characterization of Neurobehavioral Signals (fNIRS, EEG, EMG, Force, and Breathing) During a Bimanual Grip Force Control Task
Cited by: 10
Author(s): Pablo Ortega, Tong Zhao, A. Aldo Faisal
Software Mentions: 11
Published: about 4 years ago

10.3389/fphys.2018.00680

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Cited by: 59
Author(s): Aurélien Naldi, Céline Hernandez, Nicolas Levy, Gautier Stoll, Pedro T. Monteiro, Claudine Chaouiya, Tomáš Helikar, Andrei Zinovyev, Laurence Calzone, Sarah Cohen-Boulakia, Denis Thieffry, Loı̈c Paulevé
Software Mentions: 9
Published: over 6 years ago

10.1107/S1600576718017296

<i>refnx</i>: neutron and X-ray reflectometry analysis in Python
Cited by: 95
Author(s): Andrew Nelson, Stuart W. Prescott
Software Mentions: 8
Published: almost 6 years ago

10.7554/eLife.47994

DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning
Cited by: 304
Author(s): Jacob M. Graving, Daniel H. Chae, Hemal Naik, Liang Li, Benjamin Koger, Blair R. Costelloe, Iain D. Couzin
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0223010

KETOS: Clinical decision support and machine learning as a service – A training and deployment platform based on Docker, OMOP-CDM, and FHIR Web Services
Cited by: 27
Author(s): Julian Gruendner, Thorsten Schwachhofer, Phillip Sippl, Nicolas Wolf, Marcel Erpenbeck, Christian Gülden, Lorenz A. Kapsner, Jakob Zierk, Sebastian Mate, Michael Stürzl, Roland S. Croner, Hans‐Ulrich Prokosch, Dennis Toddenroth
Software Mentions: 7
Published: about 5 years ago

10.3389/fpls.2021.715309

An Affordable Image-Analysis Platform to Accelerate Stomatal Phenotyping During Microscopic Observation
Cited by: 2
Author(s): Yosuke Toda, Toshiaki Tameshige, Masakazu Tomiyama, Toshinori Kinoshita, Kentaro Shimizu
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pcbi.1008326

Using interactive digital notebooks for bioscience and informatics education
Cited by: 10
Author(s): Alan Davies, Frances Hooley, Peter Causey-Freeman, Iliada Eleftheriou, Georgina Moulton
Software Mentions: 6
Published: about 4 years ago

10.1038/sdata.2017.151

Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data
Cited by: 159
Author(s): Nicolas Fernandez, Gregory W. Gundersen, Adeeb Rahman, Mark L. Grimes, Klarisa Rikova, Peter Hornbeck, Avi Ma’ayan
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0238689

Assessment of transcriptomic constraint-based methods for central carbon flux inference
Cited by: 3
Author(s): Siddharth Bhadra-Lobo, Min Kyung Kim, Desmond S. Lun
Software Mentions: 5
Published: about 4 years ago

10.3389/fmolb.2021.624264

Serial Electron Diffraction Data Processing With diffractem and CrystFEL
Cited by: 7
Author(s): Robert Bücker, Pascal Hogan-Lamarre, R. J. Dwayne Miller
Software Mentions: 5
Published: over 3 years ago

10.7554/eLife.26726

Systematic integration of biomedical knowledge prioritizes drugs for repurposing
Cited by: 303
Author(s): Daniel S. Himmelstein, Antoine Lizée, Christine Hessler, Leo Brueggeman, Sabrina Chen, Dexter Hadley, Ari Green, Pouya Khankhanian, Sergio E. Baranzini
Software Mentions: 5
Published: about 7 years ago

10.1016/j.dib.2020.106472

Dataset of sodium chloride sterile liquid in bottles for intravenous administration and fill level monitoring
Cited by: 2
Author(s): Danilo Pau, Bipin P. Kumar, Prashant Namekar, Gauri Dhande, Luca Simonetta
Software Mentions: 5
Published: almost 4 years ago

10.7554/eLife.54082

Topology-driven protein-protein interaction network analysis detects genetic sub-networks regulating reproductive capacity
Cited by: 10
Author(s): Tarun Kumar, Leo Blondel, Cassandra G. Extavour
Software Mentions: 4
Published: about 4 years ago

10.1038/s41597-019-0086-6

Posterior samples of the parameters of binary black holes from Advanced LIGO, Virgo’s second observing run
Cited by: 8
Author(s): S. De, C. Biwer, Collin D. Capano, A. Nitz, D. A. Brown
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.7608

The effect of reverse transcription enzymes and conditions on high throughput amplicon sequencing of the 16S rRNA
Cited by: 2
Author(s): Adam Šťovíček, Smadar Cohen-Chalamish, Osnat Gillor
Software Mentions: 4
Published: about 5 years ago

10.1128/mSystems.00162-16

Balance Trees Reveal Microbial Niche Differentiation
Cited by: 217
Author(s): James T. Morton, Jon G. Sanders, Robert A. Quinn, Daniel McDonald, Antonio González, Yoshiki Vázquez-Baeza, José A. Navas-Molina, Se Jin Song, Jessica L. Metcalf, Embriette R. Hyde, Manuel E. Lladser, Pieter C. Dorrestein, Rob Knight
Software Mentions: 4
Published: over 7 years ago

10.1186/s12918-016-0271-6

Systems biology of the structural proteome
Cited by: 47
Author(s): Elizabeth Brunk, Nathan Mih, Jonathan M. Monk, Zhen Zhang, Edward J. O’Brien, Spencer Bliven, Ke Chen, Roger L. Chang, Philip E. Bourne, Bernhard Ø. Palsson
Software Mentions: 3
Published: over 8 years ago

10.7554/eLife.68346

Structurally distributed surface sites tune allosteric regulation
Cited by: 21
Author(s): James W. McCormick, Marielle A.X. Russo, Samuel Thompson, Aubrie Blevins, Kimberly A. Reynolds
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0230322

Automated monitoring of tweets for early detection of the 2014 Ebola epidemic
Cited by: 17
Author(s): Aditya Joshi, Ross Sparks, Sarvnaz Karimi, Sheng-Lun Jason Yan, Abrar Ahmad Chughtai, Cécile Paris, C. Raina MacIntyre
Software Mentions: 2
Published: over 4 years ago

10.1186/s13036-018-0115-6

The genetic insulator RiboJ increases expression of insulated genes
Cited by: 29
Author(s): Kalen P. Clifton, Ethan M. Jones, Sudip Paudel, John P. Marken, Callan E. Monette, Andrew D. Halleran, Lidia Epp, Margaret S. Saha
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pcbi.1006220

Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology
Cited by: 40
Author(s): Kyle Medley, Kiri Choi, Matthias König, Lucian P. Smith, Stanley Gu, Joseph L. Hellerstein, Stuart C. Sealfon, Herbert M. Sauro
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-77706-7

The extracellular juncture domains in the intimin passenger adopt a constitutively extended conformation inducing restraints to its sphere of action
Cited by: 5
Author(s): Julia Weikum, Alina Kulakova, Giulio Tesei, Shogo Yoshimoto, Line Vejby Jægerum, Monika Schütz, Katsutoshi Hori, Marie Skepö, Pernille Harris, Jack C. Leo, J. Preben Morth
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.dib.2021.107186

Sounds of silence: Data for analysing muted safety voice in speech
Cited by: 0
Author(s): Mark C. Noort, Tom W. Reader, Alex Gillespie
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0230430

The Community Simulator: A Python package for microbial ecology
Cited by: 28
Author(s): Robert Marsland, Wenping Cui, Joshua E. Goldford, Pankaj Mehta
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.31955

A comprehensive and quantitative exploration of thousands of viral genomes
Cited by: 51
Author(s): Gita Mahmoudabadi, Rob Phillips
Software Mentions: 1
Published: over 6 years ago

10.12688/f1000research.51794.1

Summary of two questionnaires designed to understand the research climate for Bioimage Analysts in the UK between 2016-2019
Cited by: 0
Author(s): Dominic Waithe
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2021.598925

In silico Analyses of Immune System Protein Interactome Network, Single-Cell RNA Sequencing of Human Tissues, and Artificial Neural Networks Reveal Potential Therapeutic Targets for Drug Repurposing Against COVID-19
Cited by: 11
Author(s): Andrés López‐Cortés, Patricia Guevara-Ramírez, Nikolaos C Kyriakidis, Carlos Barba-Ostria, Ángela León Cáceres, Santiago Guerrero, Esteban Ortiz‐Prado, Cristian R. Munteanu, Eduardo Tejera, Doménica Cevallos-Robalino, Ana María Gómez-Jaramillo, Katherine Simbaña-Rivera, Adriana Granizo-Martínez, Gabriela Pérez-M, Silvana Moreno, Jennyfer M. García-Cárdenas, Ana Karina Zambrano, Yunierkis Pérez-Castillo, Alejandro Cabrera-Andrade, Lourdes Puig San Andrés, Carolina Proaño-Castro, Jhommara Bautista, Andreina Quevedo, Nelson Varela, Luis A. Quiñones, César Paz‐y‐Miño
Software Mentions: 1
Published: over 3 years ago

10.12688/f1000research.12817.2

Evaluation of predicted Medfly (Ceratitis capitata) quarantine length in the United States utilizing degree-day and agent-based models
Cited by: 2
Author(s): Travis C. Collier, Nicholas C. Manoukis
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2021.107219

A gigabyte interpreted seismic dataset for automatic fault recognition
Cited by: 8
Author(s): Yu An, Guo Jiu-lin, Qing Ye, Conrad Childs, John J. Walsh, Ruihai Dong
Software Mentions: 1
Published: over 3 years ago

10.1038/s41597-021-00864-4

Data-driven curation process for describing the blood glucose management in the intensive care unit
Cited by: 6
Author(s): Aldo Robles Arévalo, Jason H. Maley, Lawrence Baker, Susana M. Vieira, J.M. Sousa, Stan N. Finkelstein, Roselyn Mateo-Collado, Jesse D. Raffa, Leo Anthony Celi, Francis DeMichele
Software Mentions: 1
Published: over 3 years ago

Ecosyste.ms: Papers

Projects: pypi: ipynb

Papers Mentioning ipynb 30