Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fphys.2018.00680

https://doi.org/10.3389/fphys.2018.00680

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

Cited by: 59
Author(s): Aurélien Naldi, Céline Hernandez, Nicolas Levy, Gautier Stoll, Pedro T. Monteiro, Claudine Chaouiya, Tomáš Helikar, Andrei Zinovyev, Laurence Calzone, Sarah Cohen-Boulakia, Denis Thieffry, Loı̈c Paulevé
Published: over 6 years ago

Software Mentions 9

cran: BoolNet
Construction, Simulation and Analysis of Boolean Networks
Papers that mentioned: 73
pypi: BooleanNet
Boolean Network Simulation Toolbox
Papers that mentioned: 41
pypi: boolsim
Python interface to boolSim
Papers that mentioned: 1
pypi: colomoto-docker
Helper script to run docker image colomoto/colomoto-docker
Papers that mentioned: 1
pypi: ginsim
Python interface to GINsim and BioLQM API
Papers that mentioned: 4
pypi: ipynb
Package / Module importer for importing code from Jupyter Notebook files (.ipynb)
Papers that mentioned: 30
pypi: maboss
A python and jupyter API for the MaBoSS software
Papers that mentioned: 2
pypi: Pint
Physical quantities module
Papers that mentioned: 10
pypi: pypint
Python interface to Pint
Papers that mentioned: 1