pypi: GTC | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-11029-y

Integrated Analysis of Copy Number Variations and Gene Expression Profiling in Hepatocellular carcinoma
Cited by: 28
Author(s): Chixing Zhou, Wentao Zhang, Wanyong Chen, Yuehui Yin, Manar Atyah, Shuang Liu, Lei Guo, Yi Shi, Qing–Hai Ye, Qiongzhu Dong, Ning Ren
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-021-87829-0

GWAS analysis reveals distinct pathogenicity profiles of Australian Parastagonospora nodorum isolates and identification of marker-trait-associations to septoria nodorum blotch
Cited by: 7
Author(s): H. Phan, Eiko Furuki, Lukas Hunziker, Kasia Rybak, Kar‐Chun Tan
Software Mentions: 6
Published: over 3 years ago

10.1093/bioinformatics/btaa290

genozip: a fast and efficient compression tool for VCF files
Cited by: 12
Author(s): Divon Mordechai Lan, Raymond Tobler, Yassine Souilmi, Bastien Llamas
Software Mentions: 2
Published: over 4 years ago

10.1002/bit.27534

Genome‐wide analysis of single nucleotide variants allows for robust and accurate assessment of clonal derivation in cell lines used to produce biologics
Cited by: 2
Author(s): Aléxandre Kuhn, Valérie Le Fourn, Igor Fisch, Nicolas Mermod
Software Mentions: 2
Published: about 4 years ago

10.1111/pbi.12757

High‐density genotyping of the A.E. Watkins Collection of hexaploid landraces identifies a large molecular diversity compared to elite bread wheat
Cited by: 39
Author(s): Mark Winfield, Alexandra M. Allen, Paul Wilkinson, Amanda Burridge, Gary Barker, Jane A. Coghill, Christy Waterfall, Luzie U. Wingen, Simon Griffiths, Keith J. Edwards
Software Mentions: 2
Published: about 7 years ago

10.1186/1750-1172-8-58

Clinical and molecular characterization of 40 patients with classic Ehlers–Danlos syndrome: identification of 18 COL5A1 and 2 COL5A2 novel mutations
Cited by: 99
Author(s): Marco Ritelli, Chiara Dordoni, Marina Venturini, Nicola Chiarelli, Stefano Quinzani, Michele Traversa, Nicoletta Zoppi, Annalisa Vascellaro, Anita Wischmeijer, Emanuela Manfredini, Livia Garavelli, Piergiacomo Calzavara‐Pinton, Marina Colombi
Software Mentions: 2
Published: over 11 years ago

10.1186/s12881-015-0189-7

Chinese family with diffuse oesophageal leiomyomatosis: a new COL4A5/COL4A6 deletion and a case of gonosomal mosaicism
Cited by: 10
Author(s): Wei Liu, John Wong, Qiuming He, Emily H M Wong, Clara S. Tang, Ruizhong Zhang, Man Ting So, Kenneth K. Wong, John M. Nicholls, Stacey S. Cherny, Pak C. Sham, Paul K. H. Tam, Maria Mercè García-Barceló, Huimin Xia
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0232942

Vertical lossless genomic data compression tools for assembled genomes: A systematic literature review
Cited by: 2
Author(s): Kelvin V. Kredens, Juliano V. Martins, Osmar Betazzi Dordal, Mauri Ferrandin, Roberto Hirochi Herai, Edson Emílio Scalabrin, Bráulio C. Ávila
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0032667

Amplified Genes May Be Overexpressed, Unchanged, or Downregulated in Cervical Cancer Cell Lines
Cited by: 44
Author(s): Oscar Vazquez-Mena, Ingrid Medina-Martínez, Eligia Juárez-Torres, Valeria Barrón, Ana Espinosa, Nicolás Villegas-Sepulveda, Laura Gómez-Laguna, Karem Nieto-Martínez, Lorena Orozco, Edgar Román-Basaure, Sergio Muñoz Cortez, Manuel Borges Ibañez, Carlos Venegas-Vega, Mariano Guardado-Estrada, Angélica Rangel-López, Susana Kofman, Jaime Berumen
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0097842

Impact of Gene Dosage on Gene Expression, Biological Processes and Survival in Cervical Cancer: A Genome-Wide Follow-Up Study
Cited by: 40
Author(s): Ingrid Medina-Martínez, Valeria Barrón, Edgar Román-Bassaure, Eligia Juárez-Torres, Mariano Guardado-Estrada, Ana Espinosa, Miriam Bermúdez, Fernando Fernández, Carlos Venegas-Vega, Lorena Orozco, Edgar Zenteno, Susana Kofman, Jaime Berumen
Software Mentions: 2
Published: over 10 years ago

10.1186/s13059-021-02442-8

VariantStore: an index for large-scale genomic variant search
Cited by: 3
Author(s): Prashant Pandey, Yinjie Gao, Carl Kingsford
Software Mentions: 2
Published: about 3 years ago

10.1093/gbe/evz172

Adaptation to Extreme Environments in an Admixed Human Population from the Atacama Desert
Cited by: 12
Author(s): Lucas Vicuña, Mario Fernández, Cecilia Vial, Patricio Valdebenito, Eduardo Chaparro, Karena Espinoza, Annemarie Ziegler, Alberto Bustamante, S. Eyheramendy
Software Mentions: 2
Published: about 5 years ago

10.1002/acm2.12251

To frame or not to frame? Cone‐beam CT‐based analysis of head immobilization devices specific to linac‐based stereotactic radiosurgery and radiotherapy
Cited by: 43
Author(s): Steven Babic, Young Kyung Lee, Mark Ruschin, F. Lochray, A. W. Lightstone, Eshetu G. Atenafu, Nicolas Phan, Todd G. Mainprize, May Tsao, Hany Soliman, Arjun Sahgal
Software Mentions: 2
Published: over 6 years ago

10.1186/s12859-017-1622-z

On the association analysis of CNV data: a fast and robust family-based association method
Cited by: 1
Author(s): Meiling Liu, Sanghoon Moon, Long Wang, Sulgi Kim, Yeon Jung Kim, Mi Yeong Hwang, Young Jin Kim, Robert C. Elston, Bong-Jo Kim, Sungho Won
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0067552

Reconstruction of an Integrated Genome-Scale Co-Expression Network Reveals Key Modules Involved in Lung Adenocarcinoma
Cited by: 88
Author(s): Gholamreza Bidkhori, Zahra Narimani, Saman Hosseini Ashtiani, Ali Moeini, Abbas Nowzari-Dalini, Ali Masoudi‐Nejad
Software Mentions: 1
Published: about 11 years ago

10.1186/1756-0381-4-8

A comparison of genomic copy number calls by Partek Genomics Suite, Genotyping Console and Birdsuite algorithms to quantitative PCR
Cited by: 11
Author(s): Britney L. Grayson, Thomas M. Aune
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0013422

New Copy Number Variations in Schizophrenia
Cited by: 83
Author(s): Chiara Magri, Emilio Sacchetti, Michele Traversa, Paolo Valsecchi, Rita Gardella, Cristian Bonvicini, Alessandra Minelli, Massimo Gennarelli, Sergio Barlati
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0022315

Association between Genetic Subgroups of Pancreatic Ductal Adenocarcinoma Defined by High Density 500 K SNP-Arrays and Tumor Histopathology
Cited by: 15
Author(s): María Laura Gutiérrez, Luís Muñoz-Bellvis, María del Mar Abad, Óscar Bengoechea, María González‐González, Alberto Órfão, José María Sayagués
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0036063

Copy Number Alteration and Uniparental Disomy Analysis Categorizes Japanese Papillary Thyroid Carcinomas into Distinct Groups
Cited by: 7
Author(s): Michiko Matsuse, Kensaku Sasaki, Eijun Nishihara, Shigeki Minami, Chisa Hayashida, Hisayoshi Kondo, Keiji Suzuki, Vladimir Saenko, Koh-ichiro Yoshiura, Norisato Mitsutake, Shunichi Yamashita
Software Mentions: 1
Published: over 12 years ago

10.1038/s41431-019-0348-y

Segmental and total uniparental isodisomy (UPiD) as a disease mechanism in autosomal recessive lysosomal disorders: evidence from SNP arrays
Cited by: 8
Author(s): Ineke Labrijn-Marks, Galhana M. Somers-Bolman, Stijn L.M. in ’t Groen, Marianne Hoogeveen‐Westerveld, Marian A. Kroos, Sirpa Ala‐Mello, Olga Amaral, Clara Sá Miranda, Irene Mavridou, Helen Michelakakis, K Naess, Frans W. Verheijen, Lies H. Hoefsloot, Trijnie Dijkhuizen, Marloes Benjamins, Hannerieke J. M. van den Hout, Ans T. van der Ploeg, W.W.M. Pim Pijnappel, Jasper J. Saris, Dicky Halley
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-39863-2

Detection of stable QTLs for grain protein content in rice (Oryza sativa L.) employing high throughput phenotyping and genotyping platforms
Cited by: 30
Author(s): Krishnendu Chattopadhyay, Lambodar Behera, Torit Baran Bagchi, Sushree Sibanee Sardar, Nutan Moharana, Niraja Rani Patra, Mridul Chakraborti, Avijit Das, Bishnu Charan Marndi, Ananta Sarkar, Umakanta Ngangkham, Koushik Chakraborty, Lotan Kumar Bose, Sutapa Sarkar, Soham Ray, Srigopal Sharma
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-15-50

Evaluation of copy number variation detection for a SNP array platform
Cited by: 33
Author(s): Xin Zhang, Renqian Du, Shilin Li, Feng Zhang, Jin Li, Hongyan Wang
Software Mentions: 1
Published: over 10 years ago

10.1186/1751-0473-5-7

GTC: A web server for integrating systems biology data with web tools and desktop applications
Cited by: 2
Author(s): Dan Tenenbaum, J. Christopher Bare, Nitin S. Baliga
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pgen.1002584

Genome-Wide Association and Functional Follow-Up Reveals New Loci for Kidney Function
Cited by: 168
Author(s): Cristian Pattaro, Anna Köttgen, Alexander Teumer, Maija K. Garnaas, Carsten A. Böger, Christian Fuchsberger, Matthias Olden, Ming-Huei Chen, Adrienne Tin, Daniel Taliun, Man Li, Xiaoyi Gao, Florian Kronenberg, Qiong Yang, Claudia Hundertmark, Meredith C. Foster, Conall M. O’Seaghdha, Nicole L. Glazer, Aaron Isaacs, Ching‐Ti Liu, Albert V. Smith, Jeffrey R. O’Connell, Maksim Struchalin, Toshiko Tanaka, Li Guo, Andrew D. Johnson, Hinco J. Gierman, Mary F. Feitosa, Shih‐Jen Hwang, Elizabeth J. Atkinson, Kurt Lohman, Marilyn C. Cornelis, Åsa Johansson, Anke Tönjes, Abbas Dehghan, Vincent Chouraki, Elizabeth G. Holliday, Rossella Sorice, Zoltán Kutalik, Terho Lehtimäki, Tõnu Esko, Harshal Deshmukh, Sheila Ulivi, Audrey Y. Chu, Federico Murgia, Stella Trompet, Medea Imboden, Barbara Kollerits, Giorgio Pistis, Tamara B. Harris, Lenore J. Launer, Thor Aspelund, Guðný Eiríksdóttir, Braxton D. Mitchell, Eric Boerwinkle, Helena Schmidt, Margherita Cavalieri, R Madhumathi, Frank B. Hu, Ayşe Demirkan, Ben A. Oostra, Mariza de Andrade, Stephen T. Turner, Jingzhong Ding, Jeanette S. Andrews, Barry I. Freedman, Wolfgang Köenig, Thomas Illig, Angela Döring, H‐Erich Wichmann, Ivana Kolčić, Tatijana Zemunik, Mladen Boban, Cosetta Minelli, Heather E. Wheeler, Wilmar Igl, Ghazal Zaboli, Sarah H. Wild, Alan F. Wright, Harry Campbell, David Ellinghaus, Ute Nöthlings, Gunnar Jacobs, Reiner Biffar, Karlhans Endlich, Florian Ernst, Georg Homuth, Heyo K. Kroemer, Matthias Nauck, Sylvia Stracke, Uwe Völker, Henry Völzke, Peter Kovacs, Michael Stümvoll, Reedik Mägi, Albert Hofman, André G. Uitterlinden, Fernando Rivadeneira, Yurii S. Aulchenko, Ozren Polašek, Nick Hastie, Véronique Vitart, Catherine Helmer, Jie Jin Wang, Daniela Ruggiero, Sven Bergmann, Mika Kähönen, Jorma Viikari, Tiit Nikopensius, Michael A. Province, Shamika Ketkar, Helen M. Colhoun, Alex S.F. Doney, Antonietta Robino, Franco Giulianini, Bernhard K. Krämer, Laura Portas, Ian Ford, Brendan M. Buckley, Martin Adam, Gian-Andri Thun, Bernhard Paulweber, Margot Haun, Cinzia Sala, Marie Metzger, Paul Mitchell, Marina Ciullo, Stuart K. Kim, Péter Vollenweider, Olli T. Raitakari, Andres Metspalu, Colin N.A. Palmer, Paolo Gasparini, Mario Pirastu, J. Wouter Jukema, Nicole Probst‐Hensch, Florian Kronenberg, Daniela Toniolo, Vilmundur Gudnason, Alan R. Shuldiner, Josef Coresh, Reinhold Schmidt, Luigi Ferrucci, David S. Siscovick, Cornelia M. van Duijn, Ingrid B. Borecki, Sharon L.R. Kardia, Yongmei Liu, Gary C. Curhan, Igor Rudan, Ulf Gyllensten, James F. Wilson, André Franke, Peter P. Pramstaller, Rainer Rettig, Inga Prokopenko, Jacqueline C. M. Witteman, Caroline Hayward, Paul M. Ridker, Afshin Parsa, Murielle Bochud, Iris M. Heid, Wolfram Goessling, Daniel I. Chasman, W. H. Linda Kao, Caroline S. Fox
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1005679

A Comprehensive Genomic Analysis Reveals the Genetic Landscape of Mitochondrial Respiratory Chain Complex Deficiencies
Cited by: 215
Author(s): Masakazu Kohda, Yoshimi Tokuzawa, Yoshihito Kishita, Hiromi Nyuzuki, Yoko Moriyama, Yosuke Mizuno, Tomoko Hirata, Yukiko Yatsuka, Yzumi Yamashita‐Sugahara, Yutaka Nakachi, Hidemasa Kato, Akihiko Okuda, Shunsuke Tamaru, Nurun Nahar Borna, Kengo Banshoya, Toshiro Aigaki, Yukiko Sato-Miyata, Kohei Ohnuma, Tsutomu Suzuki, Asuteka Nagao, Hazuki Maehata, Fumihiko Matsuda, Koichiro Higasa, Masao Nagasaki, Jun Yasuda, Masayuki Yamamoto, Takuya Fushimi, Masaru Shimura, Keiko Ichimoto, Hiroko Harashima, Taro Yamazaki, Masayuki Mori, Kei Murayama, Akira Ohtake, Yasushi Okazaki
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1002903

Rare Copy Number Variants Contribute to Congenital Left-Sided Heart Disease
Cited by: 112
Author(s): Marc‐Phillip Hitz, Louis-Philippe Lemieux-Perreault, Christian R. Marshall, Yassamin Feroz-Zada, Robbie Davies, Shi Wei Yang, Anath C. Lionel, Guylaine D’Amours, Emmanuelle Lemyre, Rebecca Cullum, Jean‐Luc Bigras, Maryse Thibeault, Philippe Chétaille, Alexandre Montpetit, Paul Khairy, Bert Overduin, Sabine Klaassen, Pamela A. Hoodless, Philip Awadalla, Julie Hussin, Youssef Idaghdour, Mona Nemer, Alexandre F.R. Stewart, Cornelius F. Boerkoel, Stephen W. Scherer, Andréa Richter, Marie‐Pierre Dubé, Grégor Andelfinger
Software Mentions: 1
Published: about 12 years ago

10.1186/1423-0127-18-36

Molecular profile and copy number analysis of sporadic colorectal cancer in Taiwan
Cited by: 22
Author(s): Chun-Ming Lin, Jen Kou Lin, Shih Ching Chang, Ya Hui Chang, Hwey May Chang, Jin Hwang Liu, Ling Hui Li, Yuan Tsong Chen, Shih Feng Tsai, Wei Shone Chen
Software Mentions: 1
Published: over 13 years ago

10.1038/srep11600

Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice
Cited by: 105
Author(s): Nisha Singh, Pawan Kumar Jayaswal, Kabita Panda, Paritra Mandal, Vinod Kumar, Balwant Singh, Sanjay Mishra, Yogendra Singh, Renu Singh, Vandna Rai, Asha Gupta, Tilak Raj Sharma, Nagendra Singh
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0027560

SNPs Array Karyotyping Reveals a Novel Recurrent 20p13 Amplification in Primary Myelofibrosis
Cited by: 5
Author(s): Giuseppe Visani, Maria Rosaria Sapienza, Alessandro Isidori, Claudio Tripodo, Maria Antonella Laginestra, Simona Righi, C. Sacchetti, Anna Gazzola, Claudia Mannu, Mosé Rossi, Michele De Nictolis, Massimo Valentini, Meris Donati, Roberto Emiliani, Francesco Alesiani, Stefania Paolini, Carlo Finelli, Stefano Pileri, Pier Paolo Piccaluga
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0125444

A Novel Candidate Region for Genetic Adaptation to High Altitude in Andean Populations
Cited by: 41
Author(s): Guido Valverde, Hang Zhou, Sebastian Lippold, Cesare de Filippo, Kun Tang, David López Herráez, Jing Li, Mark Stoneking
Software Mentions: 1
Published: over 9 years ago

Ecosyste.ms: Papers

Projects: pypi: GTC

Papers Mentioning GTC 30