pypi: ncbi | Projects | Ecosyste.ms: Papers

10.1111/tpj.15190

Subgenome evolution in allotetraploid plants
Cited by: 19
Author(s): Matteo Schiavinato, Alexandrina Bodrug‐Schepers, Juliane C. Dohm, Heinz Himmelbauer
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0231875

Soil fungal communities differ between shaded and sun-intensive coffee plantations in El Salvador
Cited by: 10
Author(s): M. V. Rao, Robert A. Rice, Robert C. Fleischer, Carly R. Muletz‐Wolz
Software Mentions: 8
Published: over 4 years ago

10.1371/journal.pone.0227639

Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing
Cited by: 15
Author(s): Federica Antonelli, Alfonso Esposito, Ludovica Calvo, Valerio Licursi, Philippe Tisseyre, Sandra Ricci, Manuela Romagnoli, Silvano Piazza, Francesca Guerrieri
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0163111

MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data Sets
Cited by: 50
Author(s): Vanessa Isabell Jurtz, Julia Villarroel, Ole Lund, Mette Voldby Larsen, Morten Nielsen
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2018.00922

Enrichment of Bacteria From Eastern Mediterranean Sea Involved in Lignin Degradation via the Phenylacetyl-CoA Pathway
Cited by: 20
Author(s): Hyun-Joo Woo, Terry C. Hazen
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-020-6746-2

Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations
Cited by: 13
Author(s): Enrique J. Schwarzkopf, Juan Carlos Motamayor, Omar E. Cornejo
Software Mentions: 5
Published: over 4 years ago

10.1186/s12864-019-5960-2

Genome and transcriptome characterization of the glycoengineered Nicotiana benthamiana line ΔXT/FT
Cited by: 19
Author(s): Matteo Schiavinato, Richard Strasser, Lukas Mach, Juliane C. Dohm, Heinz Himmelbauer
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.6488

Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survival
Cited by: 21
Author(s): Amanda R. Goldberg, Courtney J. Conway, David C. Tank, Kimberly R. Andrews, Digpal Singh Gour, Lisette P. Waits
Software Mentions: 4
Published: over 4 years ago

10.1111/1751-7915.13871

Strain diversity of plant‐associated Lactiplantibacillus plantarum
Cited by: 15
Author(s): Alice Yu, Elissa A. Goldman, Jason T. Brooks, Benjamin L. Golomb, Irene S. Yim, Velitchka Gotcheva, Angel Angelov, Eun Bae Kim, Maria L. Marco
Software Mentions: 4
Published: over 3 years ago

10.1534/g3.119.400705

Genome ofSpea multiplicata, a Rapidly Developing, Phenotypically Plastic, and Desert-Adapted Spadefoot Toad
Cited by: 22
Author(s): Fabian Seidl, Nicholas A. Levis, Rachel Schell, David W. Pfennig, Karin S. Pfennig, Ian M. Ehrenreich
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2021.648229

A Benchmark of Genetic Variant Calling Pipelines Using Metagenomic Short-Read Sequencing
Cited by: 13
Author(s): Sergio Andreu‐Sánchez, Lianmin Chen, Daoming Wang, Hannah E. Augustijn, Alexandra Zhernakova, Jingyuan Fu
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0036995

CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella Infections
Cited by: 188
Author(s): Laëtitia Fabre, Jian Zhang, Ghislaine Guigon, Simon Le Hello, Véronique Guibert, Marie Accou-Demartin, Saïana de Romans, Catherine Lim, Chrystelle Roux, Virginie Passet, Laure Diancourt, M. Guibourdenche, Sylvie Issenhuth-Jeanjean, Mark Achtman, Sylvain Brisse, Christophe Sola, François‐Xavier Weill
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-019-52840-z

Expansion of LINEs and species-specific DNA repeats drives genome expansion in Asian Gypsy Moths
Cited by: 8
Author(s): François Hébert, Luca Freschi, Gwylim S. Blackburn, Catherine Béliveau, Ken Dewar, Brian Boyle, Dawn E. Gundersen‐Rindal, Michael E. Sparks, Michel Cusson, Richard Hamelin, Roger C. Levesque
Software Mentions: 2
Published: about 5 years ago

10.1038/srep05421

Ataxia telangiectasia derived iPS cells show preserved x-ray sensitivity and decreased chromosomal instability
Cited by: 34
Author(s): Yoshihiro Fukawatase, Masashi Toyoda, Koji Okamura, Ken Nakamura, Kazuhiko Nakabayashi, Shuji Takada, Mayu Yamazaki-Inoue, Akira Masuda, Michiyo Nasu, Kenichiro Hata, Kazunori Hanaoka, Akon Higuchi, Kaiyo Takubo, Akihiro Umezawa
Software Mentions: 2
Published: over 10 years ago

10.1186/s41065-019-0081-0

The evolution of transcriptional repressors in the Notch signaling pathway: a computational analysis
Cited by: 15
Author(s): Dieter Maier
Software Mentions: 2
Published: almost 6 years ago

10.1534/g3.117.300443

Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia)
Cited by: 51
Author(s): Carson Holt, Michael S. Campbell, David A. Keays, Nathaniel B. Edelman, Aurélie Kapusta, Emily Maclary, Eric T. Domyan, Alexander Suh, Wesley C. Warren, Mark Yandell, M. Thomas P. Gilbert, Michael D. Shapiro
Software Mentions: 2
Published: over 6 years ago

10.1186/s12915-021-01124-y

Horizontal gene transfer-mediated bacterial strain variation affects host fitness in Drosophila
Cited by: 3
Author(s): Yun Wang, Franz Baumdicker, Paul Schweiger, Sven Kuenzel, Fabian Staubach
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0229834

MPV17 does not control cancer cell proliferation
Cited by: 3
Author(s): Morgane Canonne, Anaïs Wanet, Thuy Truong An Nguyen, Alexis Khelfi, Sophie Ayama-Canden, Martine Van Steenbrugge, Antoine Fattaccioli, Étienne Sokal, Mustapha Najimi, Thierry Arnould, Patricia Renard
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2148-7-45

The power of phylogenetic approaches to detect horizontally transferred genes
Cited by: 49
Author(s): Maria Poptsova, J. Peter Gogarten
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2148-5-15

Cited by: 110
Author(s): Robert P. Perry
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2164-7-307

Evolution of proteomes: fundamental signatures and global trends in amino acid compositions
Cited by: 81
Author(s): Fredj Tekaia, Edouard Yeramian
Software Mentions: 1
Published: about 18 years ago

10.1186/1471-2164-12-105

Functional genomics of the horn fly, Haematobia irritans (Linnaeus, 1758)
Cited by: 27
Author(s): Lorena Torres, Consuelo Almazán, Nieves Ayllón, Ruth C. Galindo, Rodrigo Rosario-Cruz, H. Quiróz-Romero, José de la Fuente
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2229-12-182

Identification of wild soybean miRNAs and their target genes responsive to aluminum stress
Cited by: 130
Author(s): Qiaoying Zeng, Chunrong Yang, Qibin Ma, Xiuping Li, Wenwen Dong, Hai Nian
Software Mentions: 1
Published: about 12 years ago

10.1371/currents.tol.c24b6054aebf3602748ac042ccc8f2e9

Building a Phylogenomic Pipeline for the Eukaryotic Tree of Life - Addressing Deep Phylogenies with Genome-Scale Data
Cited by: 26
Author(s): Jessica R. Grant, Laura A. Katz
Software Mentions: 1
Published: almost 11 years ago

10.1186/1759-4499-4-1

P2P proteomics -- data sharing for enhanced protein identification
Cited by: 1
Author(s): Marco Schorlemmer, Joaquín Abián, Carles Sierra, David de la Cruz, Lorenzo Bernacchioni, Enric Jaén, Adrián Perreau de Pinninck, Manuel Atencia
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0035929

DNA Barcoding Simplifies Environmental Risk Assessment of Genetically Modified Crops in Biodiverse Regions
Cited by: 3
Author(s): Chinyere V. Nzeduru, Sandra Ronca, M. J. Wilkinson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0190184

Using genome wide association studies to identify common QTL regions in three different genetic backgrounds based on Iberian pig breed
Cited by: 14
Author(s): Ángel M Martínez-Montes, Almudena Fernández, María Muñoz, J. L. Noguera, Josep María Folch, Ana Fernández
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2017.02518

Differential Ecological Specificity of Protist and Bacterial Microbiomes across a Set of Termite Species
Cited by: 23
Author(s): Lena Waidele, Judith Korb, Christian R. Voolstra, Sven Künzel, Franck Dedeine, Fabian Staubach
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2021.644255

Unraveling Interactions of the Necrotrophic Fungal Species Botrytis cinerea With 1-Methylcyclopropene or Ozone-Treated Apple Fruit Using Proteomic Analysis
Cited by: 8
Author(s): Stefanos Testempasis, Georgia Tanou, Ioannis S. Minas, Martina Samiotaki, Athanassios Molassiotis, G. S. Karaoglanidis
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-27432-y

Substance P modulates bone remodeling properties of murine osteoblasts and osteoclasts
Cited by: 41
Author(s): Tanja Niedermair, Stephan Schirner, Raphael Seebröker, Rainer H. Straub, Susanne Grässel
Software Mentions: 1
Published: over 6 years ago

Ecosyste.ms: Papers

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