Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: ncbi
https://packages.ecosyste.ms/registries/pypi.org/packages/ncbi
Python wrapper for the NCBI C++ Toolkit
1 version
Latest release: about 1 year ago
Papers Mentioning ncbi 30
10.1111/tpj.15190
Subgenome evolution in allotetraploid plantsCited by: 19
Author(s): Matteo Schiavinato, Alexandrina Bodrug‐Schepers, Juliane C. Dohm, Heinz Himmelbauer
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pone.0231875
Soil fungal communities differ between shaded and sun-intensive coffee plantations in El SalvadorCited by: 10
Author(s): M. V. Rao, Robert A. Rice, Robert C. Fleischer, Carly R. Muletz‐Wolz
Software Mentions: 8
Published: over 4 years ago
10.1371/journal.pone.0227639
Characterization of black patina from the Tiber River embankments using Next-Generation SequencingCited by: 15
Author(s): Federica Antonelli, Alfonso Esposito, Ludovica Calvo, Valerio Licursi, Philippe Tisseyre, Sandra Ricci, Manuela Romagnoli, Silvano Piazza, Francesca Guerrieri
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pone.0163111
MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data SetsCited by: 50
Author(s): Vanessa Isabell Jurtz, Julia Villarroel, Ole Lund, Mette Voldby Larsen, Morten Nielsen
Software Mentions: 5
Published: about 8 years ago
10.3389/fmicb.2018.00922
Enrichment of Bacteria From Eastern Mediterranean Sea Involved in Lignin Degradation via the Phenylacetyl-CoA PathwayCited by: 20
Author(s): Hyun-Joo Woo, Terry C. Hazen
Software Mentions: 5
Published: over 6 years ago
10.1186/s12864-020-6746-2
Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populationsCited by: 13
Author(s): Enrique J. Schwarzkopf, Juan Carlos Motamayor, Omar E. Cornejo
Software Mentions: 5
Published: over 4 years ago
10.1186/s12864-019-5960-2
Genome and transcriptome characterization of the glycoengineered Nicotiana benthamiana line ΔXT/FTCited by: 19
Author(s): Matteo Schiavinato, Richard Strasser, Lukas Mach, Juliane C. Dohm, Heinz Himmelbauer
Software Mentions: 5
Published: over 5 years ago
10.1002/ece3.6488
Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survivalCited by: 21
Author(s): Amanda R. Goldberg, Courtney J. Conway, David C. Tank, Kimberly R. Andrews, Digpal Singh Gour, Lisette P. Waits
Software Mentions: 4
Published: over 4 years ago
10.1111/1751-7915.13871
Strain diversity of plant‐associated <i>Lactiplantibacillus plantarum</i>Cited by: 15
Author(s): Alice Yu, Elissa A. Goldman, Jason T. Brooks, Benjamin L. Golomb, Irene S. Yim, Velitchka Gotcheva, Angel Angelov, Eun Bae Kim, Maria L. Marco
Software Mentions: 4
Published: over 3 years ago
10.1534/g3.119.400705
Genome of<i>Spea multiplicata</i>, a Rapidly Developing, Phenotypically Plastic, and Desert-Adapted Spadefoot ToadCited by: 22
Author(s): Fabian Seidl, Nicholas A. Levis, Rachel Schell, David W. Pfennig, Karin S. Pfennig, Ian M. Ehrenreich
Software Mentions: 3
Published: almost 5 years ago
10.3389/fgene.2021.648229
A Benchmark of Genetic Variant Calling Pipelines Using Metagenomic Short-Read SequencingCited by: 13
Author(s): Sergio Andreu‐Sánchez, Lianmin Chen, Daoming Wang, Hannah E. Augustijn, Alexandra Zhernakova, Jingyuan Fu
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0036995
CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella InfectionsCited by: 188
Author(s): Laëtitia Fabre, Jian Zhang, Ghislaine Guigon, Simon Le Hello, Véronique Guibert, Marie Accou-Demartin, Saïana de Romans, Catherine Lim, Chrystelle Roux, Virginie Passet, Laure Diancourt, M. Guibourdenche, Sylvie Issenhuth-Jeanjean, Mark Achtman, Sylvain Brisse, Christophe Sola, François‐Xavier Weill
Software Mentions: 2
Published: over 12 years ago
10.1038/s41598-019-52840-z
Expansion of LINEs and species-specific DNA repeats drives genome expansion in Asian Gypsy MothsCited by: 8
Author(s): François Hébert, Luca Freschi, Gwylim S. Blackburn, Catherine Béliveau, Ken Dewar, Brian Boyle, Dawn E. Gundersen‐Rindal, Michael E. Sparks, Michel Cusson, Richard Hamelin, Roger C. Levesque
Software Mentions: 2
Published: almost 5 years ago
10.1038/srep05421
Ataxia telangiectasia derived iPS cells show preserved x-ray sensitivity and decreased chromosomal instabilityCited by: 34
Author(s): Yoshihiro Fukawatase, Masashi Toyoda, Koji Okamura, Ken Nakamura, Kazuhiko Nakabayashi, Shuji Takada, Mayu Yamazaki-Inoue, Akira Masuda, Michiyo Nasu, Kenichiro Hata, Kazunori Hanaoka, Akon Higuchi, Kaiyo Takubo, Akihiro Umezawa
Software Mentions: 2
Published: over 10 years ago
10.1186/s41065-019-0081-0
The evolution of transcriptional repressors in the Notch signaling pathway: a computational analysisCited by: 15
Author(s): Dieter Maier
Software Mentions: 2
Published: almost 6 years ago
10.1534/g3.117.300443
Improved Genome Assembly and Annotation for the Rock Pigeon (<i>Columba livia</i>)Cited by: 51
Author(s): Carson Holt, Michael S. Campbell, David A. Keays, Nathaniel B. Edelman, Aurélie Kapusta, Emily Maclary, Eric T. Domyan, Alexander Suh, Wesley C. Warren, Mark Yandell, M. Thomas P. Gilbert, Michael D. Shapiro
Software Mentions: 2
Published: over 6 years ago
10.1186/s12915-021-01124-y
Horizontal gene transfer-mediated bacterial strain variation affects host fitness in DrosophilaCited by: 3
Author(s): Yun Wang, Franz Baumdicker, Paul Schweiger, Sven Kuenzel, Fabian Staubach
Software Mentions: 2
Published: about 3 years ago
10.1371/journal.pone.0229834
MPV17 does not control cancer cell proliferationCited by: 3
Author(s): Morgane Canonne, Anaïs Wanet, Thuy Truong An Nguyen, Alexis Khelfi, Sophie Ayama-Canden, Martine Van Steenbrugge, Antoine Fattaccioli, Étienne Sokal, Mustapha Najimi, Thierry Arnould, Patricia Renard
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2148-7-45
The power of phylogenetic approaches to detect horizontally transferred genesCited by: 49
Author(s): Maria Poptsova, J. Peter Gogarten
Software Mentions: 1
Published: almost 18 years ago
10.1186/1471-2148-5-15
Cited by: 110Author(s): Robert P. Perry
Software Mentions: 1
Published: almost 20 years ago
10.1186/1471-2164-7-307
Evolution of proteomes: fundamental signatures and global trends in amino acid compositionsCited by: 81
Author(s): Fredj Tekaia, Edouard Yeramian
Software Mentions: 1
Published: almost 18 years ago
10.1186/1471-2164-12-105
Functional genomics of the horn fly, Haematobia irritans (Linnaeus, 1758)Cited by: 27
Author(s): Lorena Torres, Consuelo Almazán, Nieves Ayllón, Ruth C. Galindo, Rodrigo Rosario-Cruz, H. Quiróz-Romero, José de la Fuente
Software Mentions: 1
Published: over 13 years ago
10.1186/1471-2229-12-182
Identification of wild soybean miRNAs and their target genes responsive to aluminum stressCited by: 130
Author(s): Qiaoying Zeng, Chunrong Yang, Qibin Ma, Xiuping Li, Wenwen Dong, Hai Nian
Software Mentions: 1
Published: about 12 years ago
10.1371/currents.tol.c24b6054aebf3602748ac042ccc8f2e9
Building a Phylogenomic Pipeline for the Eukaryotic Tree of Life - Addressing Deep Phylogenies with Genome-Scale DataCited by: 26
Author(s): Jessica R. Grant, Laura A. Katz
Software Mentions: 1
Published: almost 11 years ago
10.1186/1759-4499-4-1
P2P proteomics -- data sharing for enhanced protein identificationCited by: 1
Author(s): Marco Schorlemmer, Joaquín Abián, Carles Sierra, David de la Cruz, Lorenzo Bernacchioni, Enric Jaén, Adrián Perreau de Pinninck, Manuel Atencia
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0035929
DNA Barcoding Simplifies Environmental Risk Assessment of Genetically Modified Crops in Biodiverse RegionsCited by: 3
Author(s): Chinyere V. Nzeduru, Sandra Ronca, M. J. Wilkinson
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0190184
Using genome wide association studies to identify common QTL regions in three different genetic backgrounds based on Iberian pig breedCited by: 14
Author(s): Ángel M Martínez-Montes, Almudena Fernández, María Muñoz, J. L. Noguera, Josep María Folch, Ana Fernández
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2017.02518
Differential Ecological Specificity of Protist and Bacterial Microbiomes across a Set of Termite SpeciesCited by: 23
Author(s): Lena Waidele, Judith Korb, Christian R. Voolstra, Sven Künzel, Franck Dedeine, Fabian Staubach
Software Mentions: 1
Published: almost 7 years ago
10.3389/fpls.2021.644255
Unraveling Interactions of the Necrotrophic Fungal Species Botrytis cinerea With 1-Methylcyclopropene or Ozone-Treated Apple Fruit Using Proteomic AnalysisCited by: 8
Author(s): Stefanos Testempasis, Georgia Tanou, Ioannis S. Minas, Martina Samiotaki, Athanassios Molassiotis, G. S. Karaoglanidis
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-018-27432-y
Substance P modulates bone remodeling properties of murine osteoblasts and osteoclastsCited by: 41
Author(s): Tanja Niedermair, Stephan Schirner, Raphael Seebröker, Rainer H. Straub, Susanne Grässel
Software Mentions: 1
Published: over 6 years ago