Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0227639

https://doi.org/10.1371/journal.pone.0227639

Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing

Cited by: 15
Author(s): Federica Antonelli, Alfonso Esposito, Ludovica Calvo, Valerio Licursi, Philippe Tisseyre, Sandra Ricci, Manuela Romagnoli, Silvano Piazza, Francesca Guerrieri
Published: almost 5 years ago

Software Mentions 6

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
pypi: kraken
OCR/HTR engine for all the languages
Papers that mentioned: 24
pypi: ncbi
Python wrapper for the NCBI C++ Toolkit
Papers that mentioned: 30
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Papers that mentioned: 144