Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0231875

https://doi.org/10.1371/journal.pone.0231875

Soil fungal communities differ between shaded and sun-intensive coffee plantations in El Salvador

Cited by: 10
Author(s): M. V. Rao, Robert A. Rice, Robert C. Fleischer, Carly R. Muletz‐Wolz
Published: over 4 years ago

Software Mentions 8

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: indicspecies
Relationship Between Species and Groups of Sites
Papers that mentioned: 218
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
pypi: ncbi
Python wrapper for the NCBI C++ Toolkit
Papers that mentioned: 30
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
pypi: qiime
Quantitative Insights Into Microbial Ecology
Papers that mentioned: 157