pypi: Babel | Projects | Ecosyste.ms: Papers

10.1186/s12859-015-0574-4

Principal component analysis-based unsupervised feature extraction applied to in silico drug discovery for posttraumatic stress disorder-mediated heart disease
Cited by: 42
Author(s): Y-h. Taguchi, Mitsuo Iwadate, Hideaki Umeyama
Software Mentions: 5
Published: over 9 years ago

10.1186/s12859-020-03670-8

RiboMiner: a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
Cited by: 9
Author(s): Fajin Li, Xudong Xing, Zhao Xiao, Xu Gang, Xuerui Yang
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.27786

Translation repression via modulation of the cytoplasmic poly(A)-binding protein in the inflammatory response
Cited by: 29
Author(s): Xu Zhang, Xiaoli Chen, Qiuying Liu, Shaojie Zhang, Wenqian Hu
Software Mentions: 4
Published: over 7 years ago

10.1186/1752-153X-2-5

Pybel: a Python wrapper for the OpenBabel cheminformatics toolkit
Cited by: 297
Author(s): Noel M. O’Boyle, Chris Morley, Geoffrey Hutchison
Software Mentions: 4
Published: over 16 years ago

10.18632/oncotarget.25966

Online structure-based screening of purchasable approved drugs and natural compounds: retrospective examples of drug repositioning on cancer targets
Cited by: 24
Author(s): Nathalie Lagarde, Julien Rey, Aram G. Gyulkhandanyan, Pierre Tufféry, Maria A. Miteva, Bruno O. Villoutreix
Software Mentions: 3
Published: about 6 years ago

10.1186/1471-2105-14-78

AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures
Cited by: 7
Author(s): John C. Earls, James A. Eddy, Cory C. Funk, Yun Woong Ko, Andrew T. Magis, Nathan D. Price
Software Mentions: 3
Published: over 11 years ago

10.1093/bioinformatics/btw585

RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints
Cited by: 124
Author(s): Yi Zhong, Theofanis Karaletsos, Philipp Drewe, Vipin T. Sreedharan, David Kuo, Kamini Singh, Hans-Guido Wendel, Gunnar Rätsch
Software Mentions: 3
Published: about 8 years ago

10.1098/rsta.2018.0147

Mastering the scales: a survey on the benefits of multiscale computing software
Cited by: 25
Author(s): Derek Groen, Jaroslaw Knap, Philipp Neumann, Diana Suleimenova, Lourens Veen, Kenneth W. Leiter
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0201509

Hydroxycholesterol binds and enhances the anti-viral activities of zebrafish monomeric c-reactive protein isoforms
Cited by: 11
Author(s): Melissa Belló-Pérez, Alberto Falcó, Beatriz Novoa, Luis Pérez, Julio Coll
Software Mentions: 3
Published: almost 6 years ago

10.1155/2019/7523159

Chromatography Based Metabolomics and<i>In Silico</i>Screening of<i>Gymnema sylvestre</i>Leaf Extract for Its Antidiabetic Potential
Cited by: 11
Author(s): Shabana Parveen, Mohd Hafizur Rehman Ansari, Rabea Parveen, Washim Khan, Sayeed Ahmad, Syed Akhtar Husain
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13059-017-1222-2

Translational contributions to tissue specificity in rhythmic and constitutive gene expression
Cited by: 49
Author(s): Violeta Castelo-Szekely, Alaaddin Bulak Arpat, Peggy Janich, David Gatfield
Software Mentions: 3
Published: over 7 years ago

10.1186/1758-2946-3-20

Chemical Entity Semantic Specification: Knowledge representation for efficient semantic cheminformatics and facile data integration
Cited by: 26
Author(s): Leonid L. Chepelev, Michel Dumontier
Software Mentions: 2
Published: over 13 years ago

10.1038/s42003-020-1090-2

Ribosome profiling reveals a functional role for autophagy in mRNA translational control
Cited by: 7
Author(s): Juliet Goldsmith, Timothy Marsh, Saurabh Asthana, Andrew M. Leidal, Deepthisri Suresh, Adam B. Olshen, Jayanta Debnath
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2105-8-310

Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms
Cited by: 12
Author(s): Luis Diago, Persy Morell, Longendri Aguilera, Ernesto Moreno
Software Mentions: 2
Published: about 17 years ago

10.1186/s12859-015-0518-z

Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis
Cited by: 15
Author(s): Emna Harigua‐Souiai, Isidro Cortés-Ciriano, Nathan Desdouits, Thérèse E. Malliavin, Ikram Guizani, Michaël Nilges, Arnaud Blondel, Guillaume Bouvier
Software Mentions: 2
Published: over 9 years ago

10.1186/1758-2946-3-16

Semantic Web integration of Cheminformatics resources with the SADI framework
Cited by: 31
Author(s): Leonid L. Chepelev, Michel Dumontier
Software Mentions: 2
Published: over 13 years ago

10.3389/fgene.2020.575012

Predicting the Animal Susceptibility and Therapeutic Drugs to SARS-CoV-2 Based on Spike Glycoprotein Combined With ACE2
Cited by: 8
Author(s): Min Shen, Chao Liu, R. Xu, Zijing Ruan, Shiying Zhao, Huidong Zhang, Wen Wang, Xinhe Huang, Yang Li, Yong Tang, Yang Tai, Xu Jia
Software Mentions: 1
Published: about 4 years ago

10.3389/frobt.2020.00084

From Continuous Observations to Symbolic Concepts: A Discrimination-Based Strategy for Grounded Concept Learning
Cited by: 2
Author(s): Jens Nevens, Paul Van Eecke, Katrien Beuls
Software Mentions: 1
Published: over 4 years ago

10.1038/s41597-020-00764-z

HuskinDB, a database for skin permeation of xenobiotics
Cited by: 12
Author(s): Dmitri Stepanov, Steven J. Canipa, Gerhard Wolber
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-21256-6

Guanosine monophosphate reductase 1 is a potential therapeutic target for Alzheimer’s disease
Cited by: 20
Author(s): Hongde Liu, Kun Luo, Da Luo
Software Mentions: 1
Published: almost 7 years ago

10.3390/s20082256

Low-Cost Sensors for Urban Noise Monitoring Networks—A Literature Review
Cited by: 30
Author(s): Judicaël Picaut, Arnaud Can, Nicolas Fortin, Jérémy Ardouin, Mathieu Lagrange
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.18311

A systematic view on influenza induced host shutoff
Cited by: 88
Author(s): Adi Bercovich-Kinori, Julie H.Y. Tai, Idit Anna Gelbart, Alina Shitrit, Shani Ben‐Moshe, Yaron Drori, Shalev Itzkovitz, Michal Mandelboim, Noam Stern-Ginossar
Software Mentions: 1
Published: about 8 years ago

10.3390/molecules25214990

Choline Hydrogen Dicarboxylate Ionic Liquids by X-ray Scattering, Vibrational Spectroscopy and Molecular Dynamics: H-Fumarate and H-Maleate and Their Conformations
Cited by: 8
Author(s): Simone Di Muzio, Fabio Ramondo, Lorenzo Gontrani, Francesco Ferella, M. Nardone, P. Benassi
Software Mentions: 1
Published: about 4 years ago

10.3390/molecules24152815

Antibacterial Activity and Molecular Docking Studies of a Selected Series of Hydroxy-3-arylcoumarins
Cited by: 55
Author(s): Maria Barbara Pisano, Amit Kumar, Rosaria Medda, Gianluca Gatto, Rajesh Pal, Antonella Fais, Benedetta Era, Sofia Cosentino, Eugenio Uriarte, Lourdes Santana, Francesca Pintus, María Joäo Matos
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.35034

Translational control of ERK signaling through miRNA/4EHP-directed silencing
Cited by: 39
Author(s): Seyed Mehdi Jafarnejad, Clément Chapat, Edna Matta‐Camacho, Idit Anna Gelbart, Geoffrey G. Hesketh, Meztli Arguello, Aitor Garzia, Sung Hoon Kim, Jan Attig, M.M. Shapiro, Masahiro Morita, Arkady Khoutorsky, Tommy Alain, Christos G. Gkogkas, Noam Stern-Ginossar, Thomas Tuschl, Anne‐Claude Gingras, Thomas F. Duchaîne, Nahum Sonenberg
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0003759

Insights into the Interactions of Fasciola hepatica Cathepsin L3 with a Substrate and Potential Novel Inhibitors through In Silico Approaches
Cited by: 13
Author(s): Lilian Hernández Alvarez, Dany Naranjo Feliciano, Jorge Enrique Hernández González, Rosemberg de Oliveira Soares, Diego E. B. Gomes, Pedro Geraldo Pascutti
Software Mentions: 1
Published: over 9 years ago

10.1186/1472-6807-9-64

Molecular models for intrastrand DNA G-quadruplexes
Cited by: 17
Author(s): Federico Fogolari, Haritha Haridas, Alessandra Corazza, Paolo Viglino, Davide Corà, Michele Caselle, Gennaro Esposito, Luigi E. Xodo
Software Mentions: 1
Published: almost 16 years ago

10.1155/2021/8814890

Phytochemicals of Rhus spp. as Potential Inhibitors of the SARS-CoV-2 Main Protease: Molecular Docking and Drug-Likeness Study
Cited by: 6
Author(s): Yousery E. Sherif, Sami A. Gabr, Nasser Mohammed Hosny, Ahmad H. Alghadir, Rayan M. Alansari
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms20071742

Structure-Based Virtual Screening and In Vitro Evaluation of New Trypanosoma cruzi Cruzain Inhibitors
Cited by: 22
Author(s): Verónica Herrera-Mayorga, Edgar E. Lara-Ramírez, Karla Fabiola Chacón-Vargas, Charmina Aguirre-Alvarado, Lorena Rodrı́guez-Páez, Verónica Alcántara-Farfán, Joaquín Cordero‐Martínez, Benjamín Nogueda‐Torres, Francisco Reyes-Espinosa, Virgilio Bocanegra-García, Gildardo Rivera
Software Mentions: 1
Published: over 5 years ago

10.3389/fchem.2017.00053

A QSTR-Based Expert System to Predict Sweetness of Molecules
Cited by: 27
Author(s): Cristián Guerra Rojas, Roberto Todeschini, Davide Ballabio, Andrea Mauri, Viviana Consonni, Piercósimo Tripaldi, Francesca Grisoni
Software Mentions: 1
Published: over 7 years ago

Ecosyste.ms: Papers

Projects: pypi: Babel

Papers Mentioning Babel 30