Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: emma
https://packages.ecosyste.ms/registries/pypi.org/packages/emma
Emma -- Productivity analysis tool.
1 version
Latest release: over 2 years ago
21 downloads last month
Papers Mentioning emma 27
10.1038/s41598-019-41592-5
A Genome-Wide Analysis of the Penumbral Volume in Inbred Mice following Middle Cerebral Artery OcclusionCited by: 1
Author(s): Robert F. Rudy, Nareerat Charoenvimolphan, Baogang Qian, Annerose Berndt, Robert M. Friedlander, Scott T. Weiss, Rose Du
Software Mentions: 12
Published: over 5 years ago
10.1371/journal.pgen.1008748
Polygenic adaptation of rosette growth in Arabidopsis thalianaCited by: 19
Author(s): Benedict Wieters, Kim A. Steige, Fei He, Evan Koch, Sebastián E. Ramos-Onsins, Hongya Gu, Ya‐Long Guo, Shamil Sunyaev, Juliette de Meaux
Software Mentions: 11
Published: almost 4 years ago
10.15252/msb.20145123
Natural genetic variation impacts expression levels of coding, non‐coding, and antisense transcripts in fission yeastCited by: 61
Author(s): Mathieu Clément-Ziza, Xavi Marsellach, Sandra Codlin, Manos A. Papadakis, Susanne Reinhardt, María Rodríguez-López, Stuart Martin, Samuel Marguerat, Alexander Schmidt, Eun‐Hye Lee, Christopher T. Workman, Jürg Bähler, Andreas Beyer
Software Mentions: 5
Published: about 10 years ago
10.1371/journal.pgen.1008123
Mouse genome-wide association and systems genetics identifies Lhfp as a regulator of bone massCited by: 19
Author(s): Larry D. Mesner, Gina M. Calabrese, Basel M. Al‐Barghouthi, Daniel M. Gatti, John P. Sundberg, Gary A. Churchill, Dana A. Godfrey, Cheryl Ackert‐Bicknell, Charles R. Farber
Software Mentions: 5
Published: over 5 years ago
10.1107/S205979831801570X
Choosing your (Friedel) mates wisely: grouping data sets to improve anomalous signalCited by: 6
Author(s): Nicolas Foos, Michele Cianci, Max H. Nanao
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pcbi.1009372
FunOrder: A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolutionCited by: 8
Author(s): Gabriel A. Vignolle, Denise Schaffer, Leopold Zehetner, Robert L. Mach, Astrid R. Mach-Aigner, Christian Derntl
Software Mentions: 4
Published: about 3 years ago
10.1371/journal.pgen.1008805
Genetic analysis of osteoblast activity identifies Zbtb40 as a regulator of osteoblast activity and bone massCited by: 11
Author(s): Madison L. Doolittle, Gina M. Calabrese, Larry D. Mesner, Dana A. Godfrey, Robert Maynard, Cheryl Ackert‐Bicknell, Charles R. Farber
Software Mentions: 4
Published: over 4 years ago
10.7554/eLife.48220
Extensive intraspecies cryptic variation in an ancient embryonic gene regulatory networkCited by: 19
Author(s): Yamila N. Torres Cleuren, Chee Kiang Ewe, Kyle C. Chipman, Emily Mears, Cricket G. Wood, Coco Emma Alma Al-Alami, Melissa R. Alcorn, Thomas L. Turner, Pradeep M. Joshi, Russell G. Snell, Joel H. Rothman
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pgen.1000796
Genomic Hotspots for Adaptation: The Population Genetics of Müllerian Mimicry in Heliconius eratoCited by: 103
Author(s): Brian A. Counterman, Félix Araújo-Pérez, Heather M. Hines, Simon W. Baxter, Clay Morrison, Daniel P. Lindstrom, Riccardo Papa, Laura Ferguson, Mathieu Joron, Richard H. ffrench-Constant, Christopher P. Smith, Dahlia M. Nielsen, Rui Chen, Chris D. Jiggins, Robert D. Reed, Georg Halder, James Mallet, W. Owen McMillan
Software Mentions: 3
Published: over 14 years ago
10.1186/1751-0473-8-17
GEMBASSY: an EMBOSS associated software package for comprehensive genome analysesCited by: 13
Author(s): Hidetoshi Itaya, Kazuki Oshita, Kazuharu Arakawa, Masaru Tomita
Software Mentions: 3
Published: about 11 years ago
10.1371/journal.pone.0193499
Genomic and transcriptomic comparison of allergen and silver nanoparticle-induced mast cell degranulation reveals novel non-immunoglobulin E mediated mechanismsCited by: 12
Author(s): Micah A. Johnson, Nasser B. Alsaleh, Ryan Mendoza, Indushekhar Persaud, Alison K. Bauer, Laura Saba, Jared M. Brown
Software Mentions: 3
Published: over 6 years ago
10.1186/1297-9686-44-32
Statistical distributions of test statistics used for quantitative trait association mapping in structured populationsCited by: 16
Author(s): Simon Teyssèdre, Jean Michel J. M. Elsen, Anne Ricard
Software Mentions: 3
Published: almost 12 years ago
10.1186/1471-2164-8-426
e-Fungi: a data resource for comparative analysis of fungal genomesCited by: 29
Author(s): Cornelia Hedeler, Han Min Wong, Michael Cornell, Intikhab Álam, Darren M. Soanes, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver, Norman W. Paton
Software Mentions: 3
Published: almost 18 years ago
10.1371/journal.pone.0110436
Genome-Wide Prediction Methods in Highly Diverse and Heterozygous Species: Proof-of-Concept through Simulation in GrapevineCited by: 34
Author(s): Ágota Fodor, Vincent Segura, Marie Denis, Samuel Neuenschwander, Alexandre Fournier‐Level, Philippe Chatelet, Félix Homa, Thierry Lacombe, Patrice This, Loïc Le Cunff
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0075611
Genetic Control of Spontaneous Arthritis in a Four-Way Advanced Intercross LineCited by: 3
Author(s): Laura Mellado Ranea, António Marques, Steffen Möller, Yask Gupta, Saleh M. Ibrahim
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0037142
Selective Enrichment and Sequencing of Whole Mitochondrial Genomes in the Presence of Nuclear Encoded Mitochondrial Pseudogenes (Numts)Cited by: 29
Author(s): Jonci N. Wolff, Deborah Shearman, Robert Brooks, J. William O. Ballard
Software Mentions: 2
Published: over 12 years ago
10.1155/2010/319486
Complete Mitochondrial Genome Sequence of<i>Acrida cinerea</i>(Acrididae: Orthoptera) and Comparative Analysis of Mitochondrial Genomes in OrthopteraCited by: 10
Author(s): Nian Liu, Yuan Huang
Software Mentions: 2
Published: almost 15 years ago
10.1186/2041-1480-2-S1-S5
Semantics-based composition of EMBOSS servicesCited by: 53
Author(s): Anna-Lena Lamprecht, Stefan Naujokat, Tiziana Margaria, Bernhard Steffen
Software Mentions: 2
Published: almost 14 years ago
10.1107/S2059798321004538
Likelihood-based estimation of substructure content from single-wavelength anomalous diffraction (SAD) intensity dataCited by: 1
Author(s): Kaushik Hatti, Airlie J. McCoy, Randy J. Read
Software Mentions: 2
Published: over 3 years ago
10.2196/15741
A Digital Companion, the Emma App, for Ecological Momentary Assessment and Prevention of Suicide: Quantitative Case Series StudyCited by: 20
Author(s): Margot Morgiève, C. Genty, Jérôme Azé, Jonathan Dubois, Marion Leboyer, Guillaume Vaïva, Sofian Berrouiguet, Philippe Courtet
Software Mentions: 2
Published: about 4 years ago
10.1186/s12870-016-0829-x
Genome-wide association mapping of quantitative traits in a breeding population of sugarcaneCited by: 59
Author(s): Josefina Racedo, Lucı́a Gutiérrez, María Francisca Perera, Santiago Ostengo, Esteban Mariano Pardo, María Inés Cuenya, Björn Welin, Atilio Pedro Castagnaro
Software Mentions: 2
Published: over 8 years ago
10.1186/s13100-020-00220-0
Evolution of pogo, a separate superfamily of IS630-Tc1-mariner transposons, revealing recurrent domestication events in vertebratesCited by: 40
Author(s): Bo Gao, Yali Wang, Mohamed Diaby, Wencheng Zong, Dan Shen, Saisai Wang, Cai Chen, Xiaoyan Wang, Chengyi Song
Software Mentions: 2
Published: over 4 years ago
10.1098/rstb.2015.0404
Heterotaxy in<i>Caenorhabditis</i>: widespread natural variation in left–right arrangement of the major organsCited by: 7
Author(s): Melissa R. Alcorn, Davon C. Callander, Agustín López-Santos, Yamila N. Torres Cleuren, Bilge Birsoy, Pradeep M. Joshi, Anna W. Santure, Joel H. Rothman
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pbio.3000597
Selective sweeps on novel and introgressed variation shape mimicry loci in a butterfly adaptive radiationCited by: 60
Author(s): Markus Moest, Steven M. Van Belleghem, Jennifer E. James, Camilo Salazar, Simon H. Martin, Sarah L. Barker, Gilson R. P. Moreira, Claire Mérot, Mathieu Joron, Nicola J. Nadeau, Florian M. Steiner, Chris D. Jiggins
Software Mentions: 2
Published: over 4 years ago
10.7554/eLife.09178
Wild worm embryogenesis harbors ubiquitous polygenic modifier variationCited by: 72
Author(s): Annalise B. Paaby, Andrew White, David D. Riccardi, Kristin C. Gunsalus, Fabio Piano, Matthew V. Rockman
Software Mentions: 2
Published: about 9 years ago
10.1186/1471-2148-9-298
Phylogenetic analysis and temporal diversification of mosquitoes (Diptera: Culicidae) based on nuclear genes and morphologyCited by: 168
Author(s): Kyanne R. Reidenbach, Shelley Cook, Matthew A. Bertone, Ralph E. Harbach, Brian M. Wiegmann, Nora J. Besansky
Software Mentions: 2
Published: almost 15 years ago
10.1186/1471-2105-10-S10-S8
Bio-jETI: a framework for semantics-based service compositionCited by: 59
Author(s): Anna-Lena Lamprecht, Tiziana Margaria, Bernhard Steffen
Software Mentions: 2
Published: about 15 years ago