Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: split
https://packages.ecosyste.ms/registries/pypi.org/packages/split
Functions to split or partition sequences.
2 versions
Latest release: almost 9 years ago
2 dependent packages
3,323 downloads last month
Papers Mentioning split 30
10.1371/journal.pone.0207002
Re-purposing 16S rRNA gene sequence data from within case paired tumor biopsy and tumor-adjacent biopsy or fecal samples to identify microbial markers for colorectal cancerCited by: 24
Author(s): Mansi Shah, Todd Z. DeSantis, José‐Miguel Yamal, Tiffany L. Weir, Elizabeth P. Ryan, Julia Cope, Emily B. Hollister
Software Mentions: 6
Published: almost 6 years ago
10.1002/ece3.3638
Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (<i>Sus scrofa</i>)Cited by: 54
Author(s): Michael S. Robeson, Kamil Khanipov, George Golovko, Samantha M. Wisely, Michael D. White, Michael J. Bodenchuck, Timothy J. Smyser, Yuriy Fofanov, Noah Fierer, Antoinette J. Piaggio
Software Mentions: 6
Published: almost 7 years ago
10.3389/fmicb.2019.01714
Temperature Response of Planktonic Microbiota in Remote Alpine LakesCited by: 9
Author(s): Yiming Jiang, Haiying Huang, Ting Ma, Jinlong Ru, Stephan Blank, Rainer Kurmayer, Li Deng
Software Mentions: 5
Published: over 5 years ago
10.1186/s40168-020-00966-y
Dicer-like proteins influence Arabidopsis root microbiota independent of RNA-directed DNA methylationCited by: 10
Author(s): Rajesh Kaushal, Peng Li, Sunil Kumar Singh, Mengrui Zhang, Xinlian Zhang, Juan Ignacio Vílchez, Zhen Wang, Danxia He, Yu Ye, Suhui Lv, Zhongtian Xu, Rafael J. L. Morcillo, Wei Wang, Wei-Chang Huang, Paul W. Paré, Chun‐Peng Song, Jian‐Kang Zhu, Renyi Liu, Wenxuan Zhong, Ping Ma, Huiming Zhang
Software Mentions: 5
Published: over 3 years ago
10.3389/fpls.2017.01550
Oomycete Communities Associated with Reed Die-Back SyndromeCited by: 13
Author(s): Martina Cerri, Rumakanta Sapkota, Andrea Coppi, Valentina Ferri, Bruno Foggi, Daniela Gigante, Lorenzo Lastrucci, Roberta Selvaggi, Roberto Venanzoni, Mogens Nicolaisen, Francesco Ferranti, Lara Reale
Software Mentions: 4
Published: about 7 years ago
10.1128/mSystems.00029-19
Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 PlatformCited by: 82
Author(s): Johanna B. Holm, Michael S. Humphrys, Courtney K. Robinson, Matthew L. Settles, Sandra Ott, Li Fu, Hongqiu Yang, Pawel Gajer, Xin He, Elias McComb, Patti E. Gravitt, Khalil G. Ghanem, Rebecca M. Brotman, Jacques Ravel
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0209055
Extent of the annual Gulf of Mexico hypoxic zone influences microbial community structureCited by: 14
Author(s): Lauren Gillies Campbell, J. Cameron Thrash, Nancy N. Rabalais, Olivia U. Mason
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0148028
Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome AnalysisCited by: 198
Author(s): Adam G. Clooney, Fiona Fouhy, Roy D. Sleator, Aisling O’ Driscoll, Catherine Stanton, Paul D. Cotter, Marcus J. Claesson
Software Mentions: 4
Published: almost 9 years ago
10.1371/journal.pone.0060458
Assessing the Consequences of Denoising Marker-Based Metagenomic DataCited by: 53
Author(s): John Gaspar, W. Kelley Thomas
Software Mentions: 3
Published: over 11 years ago
10.1038/s41598-018-20649-x
In vivo microbiome and associated immune markers: New insights into the pathogenesis of vaginal dysbiosisCited by: 39
Author(s): Giuseppina Campisciano, Nunzia Zanotta, Danilo Licastro, Francesco De Seta, Manola Comar
Software Mentions: 3
Published: almost 7 years ago
10.1186/s40168-021-01081-2
A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiomeCited by: 12
Author(s): Mateus B. Casaro, Andrew Maltez Thomas, Erasmo Garcia Mendes, Claudio Fukumori, Willian R. Ribeiro, Fernando A. Oliveira, Amanda R. Crisma, Gilson Masahiro Murata, Bruna Bizzarro, Anderson Sá-Nunes, João Carlos Setúbal, Márcia Pinto Alves Mayer, Flaviano S. Martins, Angélica T. Vieira, Ana Tada Fonseca Brasil Antiorio, Wothan Tavares-de-Lima, Niels Olsen Saraiva Câmara, Rui Curi, Emmanuel Dias-Neto, Caroline M. Ferreira
Software Mentions: 3
Published: over 3 years ago
10.1128/mSphere.00410-18
Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy ProductsCited by: 41
Author(s): Zhengyao Xue, Mary E. Kable, Maria L. Marco
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-018-33007-8
Local confinement of disease-related microbiome facilitates recovery of gorgonian sea fans from necrotic-patch diseaseCited by: 14
Author(s): Elena Quintanilla, Catalina Ramírez‐Portilla, Boahemaa Adu-Oppong, Gretchen Walljasper, Stefanie P. Glaeser, Thomas Wilke, Alejandro Reyes, Juan A. Sánchez
Software Mentions: 3
Published: about 6 years ago
10.3390/nu12061628
Nutritional Composition and Microbial Communities of Two Non-alcoholic Traditional Fermented Beverages from Zambia: A Study of Mabisi and MunkoyoCited by: 20
Author(s): Justin Chileshe, Joost van den Heuvel, Ray Handema, Bas J. Zwaan, Elise F. Talsma, Sijmen E. Schoustra
Software Mentions: 2
Published: over 4 years ago
10.1186/s12866-017-1042-2
Relationship between nasopharyngeal and bronchoalveolar microbial communities in clinically healthy feedlot cattleCited by: 37
Author(s): Mohamed Zeineldin, James Lowe, Elsbeth D. Grimmer, María R C de Godoy, Mohamed M. Ghanem, Yassein M. Abd El-Raof, Brian Aldridge
Software Mentions: 2
Published: over 7 years ago
10.1186/s40168-016-0153-6
ghost-tree: creating hybrid-gene phylogenetic trees for diversity analysesCited by: 42
Author(s): Jennifer Fouquier, Jai Ram Rideout, Evan Bolyen, John Chase, Arron Shiffer, Daniel McDonald, Rob Knight, J. Gregory Caporaso, Scott T. Kelley
Software Mentions: 2
Published: over 8 years ago
10.7717/peerj.4816
An improved primer set and amplification protocol with increased specificity and sensitivity targeting the <i>Symbiodinium</i> ITS2 regionCited by: 68
Author(s): Benjamin C. C. Hume, Maren Ziegler, Julie Poulain, Xavier Pochon, Sarah Romac, Émilie Boissin, Colomban de Vargas, Serge Planes, Patrick Wincker, Christian R. Voolstra
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0106833
Paleomicrobiology: Revealing Fecal Microbiomes of Ancient Indigenous CulturesCited by: 60
Author(s): Raúl J. Cano, Jessica I. Rivera-Pérez, Gary A. Toranzos, Tasha M. Santiago-Rodríguez, Yvonne Narganes-Storde, Luis Chanlatte-Baik, Erileen García-Roldán, Lucy Bunkley-Williams, Steven E. Massey
Software Mentions: 2
Published: about 10 years ago
10.1038/sdata.2017.130
Genotoype-by-sequencing of three geographically distinct populations of Olympia oysters, Ostrea luridaCited by: 5
Author(s): Samuel J. White, Brent Vadopalas, Katherine Silliman, Steven B. Roberts
Software Mentions: 2
Published: about 7 years ago
10.1038/srep15557
The nasopharyngeal microbiota of feedlot cattleCited by: 55
Author(s): Devin B. Holman, Edouard Timsit, Trevor W. Alexander
Software Mentions: 2
Published: about 9 years ago
10.1038/s41598-017-08451-7
Culture independent assessment of human milk microbial community in lactational mastitisCited by: 114
Author(s): Shriram Patel, Yati H. Vaidya, R. C. Patel, Ramesh Pandit, Chaitanya G. Joshi, Anju Kunjadiya
Software Mentions: 2
Published: about 7 years ago
10.1186/s12859-019-2807-4
Resolving repeat families with long readsCited by: 10
Author(s): Philipp Bongartz
Software Mentions: 2
Published: over 5 years ago
10.7554/eLife.53041
Cre-assisted fine-mapping of neural circuits using orthogonal split inteinsCited by: 5
Author(s): Haojiang Luan, A. Kuzin, Ward F. Odenwald, Benjamin H. White
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0218319
Dysbiotic salivary microbiota in dry mouth and primary Sjögren’s syndrome patientsCited by: 68
Author(s): Shermin Rusthen, Anne Karin Kristoffersen, Allan Young, Hilde Kanli Galtung, Beáta Éva Petrovski, Øyvind Palm, Morten Enersen, Janicke Liaaen Jensen
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.888
Transfer of intestinal bacterial components to mammary secretions in the cowCited by: 76
Author(s): Wayne Young, Brad C. Hine, Olivia Wallace, Megan Callaghan, Rodrigo Bibiloni
Software Mentions: 1
Published: over 9 years ago
10.3390/s21010274
Adaptive Traffic Signal Control: Game-Theoretic Decentralized vs. Centralized Perimeter ControlCited by: 6
Author(s): Maha Elouni, Hossam M. Abdelghaffar, Hesham A. Rakha
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0004286
Split-Cre Complementation Indicates Coincident Activity of Different Genes In VivoCited by: 134
Author(s): Johannes Hirrlinger, Anja Scheller, Petra G. Hirrlinger, Beate Kellert, Wannan Tang, Michael C. Wehr, Sandra Goebbels, Andreas Reichenbach, Rolf Sprengel, Moritz J. Rossner, Frank Kirchhoff
Software Mentions: 1
Published: almost 16 years ago
10.1007/s00417-018-4138-y
Retinal pigment epithelium hyperplasia overlying pigment epithelial detachment in age-related macular degeneration can masquerade as neovascularization on optical coherence tomography angiographyCited by: 5
Author(s): Ling Chen, Xiongze Zhang, Yuhong Gan, Bing Liu, Yuxin Zhang, Feng Wen
Software Mentions: 1
Published: about 6 years ago
10.1111/1755-0998.13004
SymPortal: A novel analytical framework and platform for coral algal symbiont next‐generation sequencing <i>ITS2</i> profilingCited by: 172
Author(s): Benjamin C. C. Hume, Edward G. Smith, Maren Ziegler, Hugh J. M. Warrington, John A. Burt, Todd C. LaJeunesse, Joerg Wiedenmann, Christian R. Voolstra
Software Mentions: 1
Published: over 5 years ago
10.3390/microorganisms7120708
Introduction of NGS in Environmental Surveillance for Healthcare-Associated Infection ControlCited by: 22
Author(s): Manola Comar, Maria D’Accolti, Carolina Cason, Irene Soffritti, Giuseppina Campisciano, Luca Lanzoni, Matteo Bisi, Antonella Volta, Sante Mazzacane, Elisabetta Caselli
Software Mentions: 1
Published: almost 5 years ago