pypi: split | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0207002

Re-purposing 16S rRNA gene sequence data from within case paired tumor biopsy and tumor-adjacent biopsy or fecal samples to identify microbial markers for colorectal cancer
Cited by: 24
Author(s): Mansi Shah, Todd Z. DeSantis, José‐Miguel Yamal, Tiffany L. Weir, Elizabeth P. Ryan, Julia Cope, Emily B. Hollister
Software Mentions: 6
Published: about 6 years ago

10.1002/ece3.3638

Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (Sus scrofa)
Cited by: 54
Author(s): Michael S. Robeson, Kamil Khanipov, George Golovko, Samantha M. Wisely, Michael D. White, Michael J. Bodenchuck, Timothy J. Smyser, Yuriy Fofanov, Noah Fierer, Antoinette J. Piaggio
Software Mentions: 6
Published: about 7 years ago

10.3389/fmicb.2019.01714

Temperature Response of Planktonic Microbiota in Remote Alpine Lakes
Cited by: 9
Author(s): Yiming Jiang, Haiying Huang, Ting Ma, Jinlong Ru, Stephan Blank, Rainer Kurmayer, Li Deng
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-020-00966-y

Dicer-like proteins influence Arabidopsis root microbiota independent of RNA-directed DNA methylation
Cited by: 10
Author(s): Rajesh Kaushal, Peng Li, Sunil Kumar Singh, Mengrui Zhang, Xinlian Zhang, Juan Ignacio Vílchez, Zhen Wang, Danxia He, Yu Ye, Suhui Lv, Zhongtian Xu, Rafael J. L. Morcillo, Wei Wang, Wei-Chang Huang, Paul W. Paré, Chun‐Peng Song, Jian‐Kang Zhu, Renyi Liu, Wenxuan Zhong, Ping Ma, Huiming Zhang
Software Mentions: 5
Published: almost 4 years ago

10.3389/fpls.2017.01550

Oomycete Communities Associated with Reed Die-Back Syndrome
Cited by: 13
Author(s): Martina Cerri, Rumakanta Sapkota, Andrea Coppi, Valentina Ferri, Bruno Foggi, Daniela Gigante, Lorenzo Lastrucci, Roberta Selvaggi, Roberto Venanzoni, Mogens Nicolaisen, Francesco Ferranti, Lara Reale
Software Mentions: 4
Published: over 7 years ago

10.1128/mSystems.00029-19

Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform
Cited by: 82
Author(s): Johanna B. Holm, Michael S. Humphrys, Courtney K. Robinson, Matthew L. Settles, Sandra Ott, Li Fu, Hongqiu Yang, Pawel Gajer, Xin He, Elias McComb, Patti E. Gravitt, Khalil G. Ghanem, Rebecca M. Brotman, Jacques Ravel
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0209055

Extent of the annual Gulf of Mexico hypoxic zone influences microbial community structure
Cited by: 14
Author(s): Lauren Gillies Campbell, J. Cameron Thrash, Nancy N. Rabalais, Olivia U. Mason
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0148028

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis
Cited by: 198
Author(s): Adam G. Clooney, Fiona Fouhy, Roy D. Sleator, Aisling O’ Driscoll, Catherine Stanton, Paul D. Cotter, Marcus J. Claesson
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0060458

Assessing the Consequences of Denoising Marker-Based Metagenomic Data
Cited by: 53
Author(s): John Gaspar, W. Kelley Thomas
Software Mentions: 3
Published: over 11 years ago

10.1038/s41598-018-20649-x

In vivo microbiome and associated immune markers: New insights into the pathogenesis of vaginal dysbiosis
Cited by: 39
Author(s): Giuseppina Campisciano, Nunzia Zanotta, Danilo Licastro, Francesco De Seta, Manola Comar
Software Mentions: 3
Published: almost 7 years ago

10.1186/s40168-021-01081-2

A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome
Cited by: 12
Author(s): Mateus B. Casaro, Andrew Maltez Thomas, Erasmo Garcia Mendes, Claudio Fukumori, Willian R. Ribeiro, Fernando A. Oliveira, Amanda R. Crisma, Gilson Masahiro Murata, Bruna Bizzarro, Anderson Sá-Nunes, João Carlos Setúbal, Márcia Pinto Alves Mayer, Flaviano S. Martins, Angélica T. Vieira, Ana Tada Fonseca Brasil Antiorio, Wothan Tavares-de-Lima, Niels Olsen Saraiva Câmara, Rui Curi, Emmanuel Dias-Neto, Caroline M. Ferreira
Software Mentions: 3
Published: over 3 years ago

10.1128/mSphere.00410-18

Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products
Cited by: 41
Author(s): Zhengyao Xue, Mary E. Kable, Maria L. Marco
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-018-33007-8

Local confinement of disease-related microbiome facilitates recovery of gorgonian sea fans from necrotic-patch disease
Cited by: 14
Author(s): Elena Quintanilla, Catalina Ramírez‐Portilla, Boahemaa Adu-Oppong, Gretchen Walljasper, Stefanie P. Glaeser, Thomas Wilke, Alejandro Reyes, Juan A. Sánchez
Software Mentions: 3
Published: about 6 years ago

10.3390/nu12061628

Nutritional Composition and Microbial Communities of Two Non-alcoholic Traditional Fermented Beverages from Zambia: A Study of Mabisi and Munkoyo
Cited by: 20
Author(s): Justin Chileshe, Joost van den Heuvel, Ray Handema, Bas J. Zwaan, Elise F. Talsma, Sijmen E. Schoustra
Software Mentions: 2
Published: over 4 years ago

10.1186/s12866-017-1042-2

Relationship between nasopharyngeal and bronchoalveolar microbial communities in clinically healthy feedlot cattle
Cited by: 37
Author(s): Mohamed Zeineldin, James Lowe, Elsbeth D. Grimmer, María R C de Godoy, Mohamed M. Ghanem, Yassein M. Abd El-Raof, Brian Aldridge
Software Mentions: 2
Published: over 7 years ago

10.1186/s40168-016-0153-6

ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
Cited by: 42
Author(s): Jennifer Fouquier, Jai Ram Rideout, Evan Bolyen, John Chase, Arron Shiffer, Daniel McDonald, Rob Knight, J. Gregory Caporaso, Scott T. Kelley
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.4816

An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region
Cited by: 68
Author(s): Benjamin C. C. Hume, Maren Ziegler, Julie Poulain, Xavier Pochon, Sarah Romac, Émilie Boissin, Colomban de Vargas, Serge Planes, Patrick Wincker, Christian R. Voolstra
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0106833

Paleomicrobiology: Revealing Fecal Microbiomes of Ancient Indigenous Cultures
Cited by: 60
Author(s): Raúl J. Cano, Jessica I. Rivera-Pérez, Gary A. Toranzos, Tasha M. Santiago-Rodríguez, Yvonne Narganes-Storde, Luis Chanlatte-Baik, Erileen García-Roldán, Lucy Bunkley-Williams, Steven E. Massey
Software Mentions: 2
Published: over 10 years ago

10.1038/sdata.2017.130

Genotoype-by-sequencing of three geographically distinct populations of Olympia oysters, Ostrea lurida
Cited by: 5
Author(s): Samuel J. White, Brent Vadopalas, Katherine Silliman, Steven B. Roberts
Software Mentions: 2
Published: over 7 years ago

10.1038/srep15557

The nasopharyngeal microbiota of feedlot cattle
Cited by: 55
Author(s): Devin B. Holman, Edouard Timsit, Trevor W. Alexander
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-08451-7

Culture independent assessment of human milk microbial community in lactational mastitis
Cited by: 114
Author(s): Shriram Patel, Yati H. Vaidya, R. C. Patel, Ramesh Pandit, Chaitanya G. Joshi, Anju Kunjadiya
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-019-2807-4

Resolving repeat families with long reads
Cited by: 10
Author(s): Philipp Bongartz
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.53041

Cre-assisted fine-mapping of neural circuits using orthogonal split inteins
Cited by: 5
Author(s): Haojiang Luan, A. Kuzin, Ward F. Odenwald, Benjamin H. White
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0218319

Dysbiotic salivary microbiota in dry mouth and primary Sjögren’s syndrome patients
Cited by: 68
Author(s): Shermin Rusthen, Anne Karin Kristoffersen, Allan Young, Hilde Kanli Galtung, Beáta Éva Petrovski, Øyvind Palm, Morten Enersen, Janicke Liaaen Jensen
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.888

Transfer of intestinal bacterial components to mammary secretions in the cow
Cited by: 76
Author(s): Wayne Young, Brad C. Hine, Olivia Wallace, Megan Callaghan, Rodrigo Bibiloni
Software Mentions: 1
Published: over 9 years ago

10.3390/s21010274

Adaptive Traffic Signal Control: Game-Theoretic Decentralized vs. Centralized Perimeter Control
Cited by: 6
Author(s): Maha Elouni, Hossam M. Abdelghaffar, Hesham A. Rakha
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0004286

Split-Cre Complementation Indicates Coincident Activity of Different Genes In Vivo
Cited by: 134
Author(s): Johannes Hirrlinger, Anja Scheller, Petra G. Hirrlinger, Beate Kellert, Wannan Tang, Michael C. Wehr, Sandra Goebbels, Andreas Reichenbach, Rolf Sprengel, Moritz J. Rossner, Frank Kirchhoff
Software Mentions: 1
Published: almost 16 years ago

10.1007/s00417-018-4138-y

Retinal pigment epithelium hyperplasia overlying pigment epithelial detachment in age-related macular degeneration can masquerade as neovascularization on optical coherence tomography angiography
Cited by: 5
Author(s): Ling Chen, Xiongze Zhang, Yuhong Gan, Bing Liu, Yuxin Zhang, Feng Wen
Software Mentions: 1
Published: over 6 years ago

10.1111/1755-0998.13004

SymPortal: A novel analytical framework and platform for coral algal symbiont next‐generation sequencing ITS2 profiling
Cited by: 172
Author(s): Benjamin C. C. Hume, Edward G. Smith, Maren Ziegler, Hugh J. M. Warrington, John A. Burt, Todd C. LaJeunesse, Joerg Wiedenmann, Christian R. Voolstra
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms7120708

Introduction of NGS in Environmental Surveillance for Healthcare-Associated Infection Control
Cited by: 22
Author(s): Manola Comar, Maria D’Accolti, Carolina Cason, Irene Soffritti, Giuseppina Campisciano, Luca Lanzoni, Matteo Bisi, Antonella Volta, Sante Mazzacane, Elisabetta Caselli
Software Mentions: 1
Published: about 5 years ago

Ecosyste.ms: Papers

Projects: pypi: split

Papers Mentioning split 30