pypi: OpenAlea | Projects | Ecosyste.ms: Papers

10.1093/aob/mcu034

Influence of the variation of geometrical and topological traits on light interception efficiency of apple trees: sensitivity analysis and metamodelling for ideotype definition
Cited by: 43
Author(s): David Da Silva, Liqi Han, Robert Faivre, Evelyne Costes
Software Mentions: 5
Published: over 10 years ago

10.3389/fpls.2017.00686

Virtual Plant Tissue: Building Blocks for Next-Generation Plant Growth Simulation
Cited by: 7
Author(s): Dirk De Vos, A.A. Dzhurakhalov, Sean Stijven, Przemysław Kłosiewicz, Gerrit T.S. Beemster, J. Broeckhove
Software Mentions: 4
Published: over 7 years ago

10.1038/s41438-019-0137-3

Multi-scale high-throughput phenotyping of apple architectural and functional traits in orchard reveals genotypic variability under contrasted watering regimes
Cited by: 33
Author(s): Aude Coupel‐Ledru, Benoît Pallas, Magalie Delalande, Frédéric Boudon, Emma Carrié, Sébastien Martinez, Jean‐Luc Regnard, Evelyne Costes
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2229-13-122

P-TRAP: a Panicle Trait Phenotyping tool
Cited by: 66
Author(s): Faroq Al-Tam, Hélène Adam, António dos Anjos, Mathias Lorieux, Pierre Larmande, Alain Ghesquière, Stéfan Jouannic, Hamid Reza Shahbazkia
Software Mentions: 3
Published: about 11 years ago

10.1016/j.tplants.2014.02.004

Modelling hormonal response and development
Cited by: 87
Author(s): Ute Voß, Anthony Bishopp, Etienne Farcot, Malcolm J. Bennett
Software Mentions: 2
Published: over 10 years ago

10.1186/s13007-017-0246-7

A robot-assisted imaging pipeline for tracking the growths of maize ear and silks in a high-throughput phenotyping platform
Cited by: 69
Author(s): Nicolas Brichet, Christian Fournier, Olivier Turc, Olivier Strauss, Simon Artzet, Christophe Pradal, Claude Welcker, François Tardieu, Llorenç Cabrera‐Bosquet
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pcbi.1000207

Flux-Based Transport Enhancement as a Plausible Unifying Mechanism for Auxin Transport in Meristem Development
Cited by: 171
Author(s): Szymon Stoma, Mikaël Lucas, Jérôme Chopard, Marianne Schaedel, Jan Traas, Christophe Godin
Software Mentions: 2
Published: about 16 years ago

10.3389/fpls.2017.00786

Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform
Cited by: 97
Author(s): Amy Marshall‐Colón, Stephen P. Long, Doug K. Allen, Gabrielle Allen, Daniel A. Beard, Bedřich Beneš, Susanne von Caemmerer, AJ Christensen, Donna Cox, John C. Hart, Peter M. Hirst, Kavya Kannan, Daniel S. Katz, Jonathan P. Lynch, Andrew J. Millar, Balaji Panneerselvam, Nathan D. Price, Przemysław Prusinkiewicz, David Raila, Rachel G Shekar, Stuti Shrivastava, Diwakar Shukla, V. Srinivasan, Mark Stitt, Matthew J. Turk, Eberhard O. Voit, Yu Wang, Xinyou Yin, Xin Guang Zhu
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2016.01739

Integrating Physiology and Architecture in Models of Fruit Expansion
Cited by: 12
Author(s): Mikolaj Cieslak, Ibrahim Cheddadi, Frédéric Boudon, Valentina Baldazzi, Michel Génard, Christophe Godin, Nadia Bertin
Software Mentions: 2
Published: about 8 years ago

10.1093/gigascience/giz123

RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures
Cited by: 76
Author(s): Robail Yasrab, Jonathan A. Atkinson, Darren M. Wells, A. P. French, Tony Pridmore, Michael P. Pound
Software Mentions: 2
Published: about 5 years ago

10.1093/jxb/ery309

Genetic and environmental dissection of biomass accumulation in multi-genotype maize canopies
Cited by: 26
Author(s): Tsu‐Wei Chen, Llorenç Cabrera‐Bosquet, Santiago Alvarez Prado, Raphaël Perez, Simon Artzet, Christophe Pradal, Aude Coupel‐Ledru, Christian Fournier, Francois F. Tardieu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-69861-8

Modelling transport of inhibiting and activating signals and their combined effects on floral induction: application to apple tree
Cited by: 1
Author(s): Farés Belhassine, Damien Fumey, Jérôme Chopard, Christophe Pradal, Sébastien Martinez, Evelyne Costes, Benoît Pallas
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2021.652974

A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis
Cited by: 4
Author(s): Aleksandr Bobrovskikh, А. В. Дорошков, Stefano Mazzoleni, Fabrizio Cartenì, Francesco Giannino, У. С. Зубаирова
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2019.01185

Helios: A Scalable 3D Plant and Environmental Biophysical Modeling Framework
Cited by: 24
Author(s): Brian N. Bailey
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2017.00900

Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences
Cited by: 56
Author(s): Alexander Bucksch, Acheampong Atta-Boateng, Akomian Fortuné Azihou, Dorjsuren Battogtokh, Andreas Baumgartner, Brad M. Binder, Siobhan A. Braybrook, Cynthia Chang, Viktoirya Coneva, Azhari Azhari, Alexander G. Fletcher, Malia Gehan, Diego Hernan Diaz-Martinez, Lilan Hong, Anjali S. Iyer‐Pascuzzi, Laura L. Klein, Samuel Leiboff, Li Mao, Jonathan P. Lynch, Alexis Maizel, Julin Maloof, R. J. Cody Markelz, Ciera C. Martinez, Laura A. Miller, Washington Mio, Wojciech Pałubicki, Hendrik Poorter, Christophe Pradal, Charles A. Price, Eetu Puttonen, John B. Reese, Rubén Rellán‐Álvarez, Edgar P. Spalding, Erin E. Sparks, Christopher N. Topp, Joseph H. Williams, Daniel H. Chitwood
Software Mentions: 1
Published: over 7 years ago

10.1093/jxb/erw326

Identification of successive flowering phases highlights a new genetic control of the flowering pattern in strawberry
Cited by: 15
Author(s): Justine Perrotte, Yann Guédon, Amélia Gaston, Béatrice Denoyes
Software Mentions: 1
Published: about 8 years ago

10.1093/bioinformatics/btu210

The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents
Cited by: 31
Author(s): James P. Sluka, Abbas Shirinifard, Maciej Swat, Alin Cosmanescu, Randy Heiland, James A. Glazier
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2013.00233

Vertex-element models for anisotropic growth of elongated plant organs
Cited by: 40
Author(s): John A. Fozard, Mikaël Lucas, John R. King, Oliver E. Jensen
Software Mentions: 1
Published: almost 12 years ago

10.1093/aob/mcz122

MuSCA: a multi-scale source–sink carbon allocation model to explore carbon allocation in plants. An application to static apple tree structures
Cited by: 12
Author(s): Francesco Reyes, Benoît Pallas, Christophe Pradal, Federico Vaggi, Damiano Zanotelli, Massimo Tagliavini, Damiano Gianelle, Evelyne Costes
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2017.01577

Virtual Plants Need Water Too: Functional-Structural Root System Models in the Context of Drought Tolerance Breeding
Cited by: 23
Author(s): Adama Ndour, Vincent Vadez, Christophe Pradal, Mikaël Lucas
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2020.571918

A Comparative Study on the Branching Pattern of Monocyclic and Bicyclic Shoots of Apple cv. “Fuji”
Cited by: 0
Author(s): Ying-Tsui Wang, Benoît Pallas, Melba R. Salazar-Gutiérrez, Evelyne Costes, Gerrit Hoogenboom
Software Mentions: 1
Published: about 4 years ago

10.3389/fpls.2017.00353

DRACO-STEM: An Automatic Tool to Generate High-Quality 3D Meshes of Shoot Apical Meristem Tissue at Cell Resolution
Cited by: 6
Author(s): Guillaume Cerutti, Olivier Ali, Christophe Godin
Software Mentions: 1
Published: over 7 years ago

10.3390/genes10020139

An Integrative Systems Perspective on Plant Phosphate Research
Cited by: 23
Author(s): Ishan Ajmera, Charlie Hodgman, Chungui Lu
Software Mentions: 1
Published: almost 6 years ago

10.18699/VJ20.590

PlantLayout pipeline to model tissue patterning
Cited by: 1
Author(s): Maria S. Savina, В. В. Миронова
Software Mentions: 1
Published: over 4 years ago

10.1186/s12284-014-0029-y

The roots of future rice harvests
Cited by: 55
Author(s): Nourollah Ahmadi, Alain Audebert, Malcolm J. Bennett, Anthony Bishopp, Antônio Costa de Oliveira, B. Courtois, Abadala Gamby Diédhiou, Anne Diévart, Pascal Gantet, Alain Ghesquière, Emmanuel Guiderdoni, Amelia Henry, Yoshiaki Inukai, Leon V. Kochian, Laurent Laplaze, Mikaël Lucas, Doan‐Trung Luu, Baboucarr Manneh, Xiaoning Mo, M. Raveendran, Christophe Périn, Adam H. Price, S. Robin, Hervé Sentenac, Bassirou Sine, Yusaku Uga, Anne‐Aliénor Véry, Mathieu Wissuwa, Ping Wu, Jian Xu
Software Mentions: 1
Published: almost 10 years ago

10.1093/aobpla/plab055

3D phytomer-based geometric modelling method for plants—the case of maize
Cited by: 7
Author(s): Weiliang Wen, Yongjian Wang, Sheng Nan Wu, Kai Li, Siyi Gu, Xinyu Guo
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0187788

Cultivar architecture modulates spore dispersal by rain splash: A new perspective to reduce disease progression in cultivar mixtures
Cited by: 11
Author(s): Tiphaine Vidal, Pauline Lusley, Marc Leconte, C. de Vallavieille‐Pope, Laurent Huber, Sébastien Saint‐Jean
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0003673

An Auxin Transport-Based Model of Root Branching in Arabidopsis thaliana
Cited by: 75
Author(s): Mikaël Lucas, Yann Guédon, Christian Jay‐Allemand, Christophe Godin, Laurent Laplaze
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0054802

The Flux-Based PIN Allocation Mechanism Can Generate Either Canalyzed or Diffuse Distribution Patterns Depending on Geometry and Boundary Conditions
Cited by: 12
Author(s): M.L. Walker, Etienne Farcot, Jan Traas, Christophe Godin
Software Mentions: 1
Published: almost 12 years ago

10.1242/dev.181669

Auxin fluxes through plasmodesmata modify root-tip auxin distribution
Cited by: 62
Author(s): Nathan Mellor, Ute Voß, George Janes, Malcolm J. Bennett, Darren M. Wells, Leah R. Band
Software Mentions: 1
Published: over 4 years ago

Ecosyste.ms: Papers

Projects: pypi: OpenAlea

Papers Mentioning OpenAlea 30