pypi: lib | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1008605

Machine learning based CRISPR gRNA design for therapeutic exon skipping
Cited by: 5
Author(s): Wilson Louie, Max W. Shen, Zakir Tahiry, Sophia Zhang, Daniel Worstell, Christopher A. Cassa, Richard I. Sherwood, David K. Gifford
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pbio.3000241

Islands of retroelements are major components of Drosophila centromeres
Cited by: 117
Author(s): Ching-Ho Chang, Ankita Chavan, Jason Palladino, Xiaolu Wei, Nuno M. C. Martins, Bryce Santinello, Chin-Chi Chen, Jelena Erceg, Brian J. Beliveau, Chao-ting Wu, Amanda M. Larracuente, Barbara G. Mellone
Software Mentions: 6
Published: about 5 years ago

10.1186/1751-0473-8-14

GenePattern flow cytometry suite
Cited by: 16
Author(s): Josef Špidlen, Aaron Barsky, Karin Breuer, Peter A. Carr, Marc‐Danie Nazaire, Barbara Hill, Qian Yu, Ted Liefeld, Michael Reich, Jill P. Mesirov, Peter Wilkinson, Richard H. Scheuermann, Rafick‐Pierre Sékaly, Ryan R. Brinkman
Software Mentions: 5
Published: almost 11 years ago

10.7717/peerj-cs.533

AndroAnalyzer: android malicious software detection based on deep learning
Cited by: 13
Author(s): Recep Sinan Arslan
Software Mentions: 5
Published: about 3 years ago

10.3390/s16050645

An Integrated Simulation Module for Cyber-Physical Automation Systems
Cited by: 18
Author(s): Francesco Ferracuti, Alessandro Freddi, Andrea Monteriù, Mariorosario Prist
Software Mentions: 4
Published: about 8 years ago

10.1186/s13059-019-1842-9

Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
Cited by: 318
Author(s): Brian J. Haas, Alexander Dobin, Bo Li, Nicolas Stransky, Nathalie Pochet, Aviv Regev
Software Mentions: 4
Published: over 4 years ago

10.1007/s10577-019-09605-1

A centromere satellite concomitant with extensive karyotypic diversity across the Peromyscus genus defies predictions of molecular drive
Cited by: 29
Author(s): Brendan M Smalec, Thomas Heider, Brianna L. Flynn, Rachel J. O’Neill
Software Mentions: 3
Published: over 5 years ago

10.1021/acs.inorgchem.0c02971

Rationalizing the Decavanadate(V) and Oxidovanadium(IV) Binding to G-Actin and the Competition with Decaniobate(V) and ATP
Cited by: 26
Author(s): Giuseppe Sciortino, Manuel Aureliano, Eugenio Garribba
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-015-0596-2

Bridger: a new framework for de novo transcriptome assembly using RNA-seq data
Cited by: 246
Author(s): Zheng Chang, Guojun Li, Juntao Liu, Yu Zhang, Cody Ashby, De Li Liu, Carole L. Cramer, Xiuzhen Huang
Software Mentions: 3
Published: over 9 years ago

10.3390/s21186050

A Novel Automate Python Edge-to-Edge: From Automated Generation on Cloud to User Application Deployment on Edge of Deep Neural Networks for Low Power IoT Systems FPGA-Based Acceleration
Cited by: 1
Author(s): Tarek Belabed, Vitor Ramos Gomes da Silva, Alexandre Quenon, Carlos Valderamma, Chokri Souani
Software Mentions: 3
Published: over 2 years ago

10.1128/mBio.01950-18

Cicada Endosymbionts Have tRNAs That Are Correctly Processed Despite Having Genomes That Do Not Encode All of the tRNA Processing Machinery
Cited by: 8
Author(s): James T. Van Leuven, Meng Mao, Denghui Xing, Gordon M. Bennett, John P. McCutcheon
Software Mentions: 3
Published: almost 5 years ago

10.1534/g3.119.400596

A Deep Learning Approach for Detecting Copy Number Variation in Next-Generation Sequencing Data
Cited by: 15
Author(s): Tom Hill, Robert L. Unckless
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2105-10-428

TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data
Cited by: 185
Author(s): Álvaro Cuadros-Inostroza, Camila Caldana, Henning Redestig, Miyako Kusano, Jan Lisec, Hugo Peña‐Cortés, Lothar Willmitzer, Matthew A. Hannah
Software Mentions: 2
Published: over 14 years ago

10.1186/s12870-018-1585-x

Comparative transcriptomics identifies patterns of selection in roses
Cited by: 13
Author(s): Shubin Li, Mingyu Zhong, Xue Dong, Xiaoling Jiang, Yuxing Xu, Yibo Sun, Fang Cheng, Li D, Kaixue Tang, Wang Si-qing, Silan Dai, Jin‐Yong Hu
Software Mentions: 2
Published: over 5 years ago

10.1111/1755-0998.12297

Genome assembly and annotation of a<i>Drosophila simulans</i>strain from Madagascar
Cited by: 46
Author(s): Nicola Palmieri, Viola Nolte, Jun Chen, Christian Schlötterer
Software Mentions: 2
Published: almost 10 years ago

10.1155/2020/4932572

Investigating Potential Inhibitory Effect of Uncaria tomentosa (Cat’s Claw) against the Main Protease 3CLpro of SARS-CoV-2 by Molecular Modeling
Cited by: 19
Author(s): Andrés F. Yepes-Pérez, Oscar Herrera-Calderon, José-Emilio Sánchez-Aparicio, Laura Tiessler-Sala, Jean‐Didier Maréchal, Wilson Cardona‐G
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2021.739781

Chromosome-Scale Genome Assembly and Transcriptome Assembly of Kawakawa Euthynnus affinis; A Tuna-Like Species
Cited by: 3
Author(s): Miloš Havelka, Eitaro Sawayama, Taiju Saito, Kazutoshi Yoshitake, Daiki Saka, Toshinao Ineno, Shuichi Asakawa, Motohiro Takagi, Ryoji Goto, Takahiro Matsubara
Software Mentions: 2
Published: over 2 years ago

10.1093/gigascience/gix108

Full genome survey and dynamics of gene expression in the greater amberjack Seriola dumerili
Cited by: 13
Author(s): Elena Sarropoulou, Arvind Sundaram, Elisavet Kaitetzidou, Georgios Kotoulas, Gregor D. Gilfillan, Nikos Papandroulakis, Constantinos C. Mylonas, Antoniοs Magoulas
Software Mentions: 2
Published: over 6 years ago

10.1038/srep34998

Crystal structure of a DNA aptamer bound to PvLDH elucidates novel single-stranded DNA structural elements for folding and recognition
Cited by: 26
Author(s): S.J. Choi, Changill Ban
Software Mentions: 2
Published: over 7 years ago

10.1534/g3.120.401411

A Reference Genome from the Symbiotic Hydrozoan,<i>Hydra viridissima</i>
Cited by: 12
Author(s): Mayuko Hamada, Noriyuki Satoh, Konstantin Khalturin
Software Mentions: 1
Published: over 3 years ago

10.1186/s12860-020-00294-x

Identification of a druggable binding pocket in the spike protein reveals a key site for existing drugs potentially capable of combating Covid-19 infectivity
Cited by: 10
Author(s): Elliot D. Drew, Robert W. Janes
Software Mentions: 1
Published: almost 4 years ago

10.1107/S2059798320014540

Statistically correcting dynamical electron scattering improves the refinement of protein nanocrystals, including charge refinement of coordinated metals
Cited by: 7
Author(s): Thorsten B. Blum, D. Housset, Max T. B. Clabbers, Eric Van Genderen, Maria Bacia‐Verloop, U. Zander, A.A. McCarthy, Guy Schoehn, Wai Li Ling, Jan Pieter Abrahams
Software Mentions: 1
Published: over 3 years ago

10.3390/s21051915

Tactile Sensors for Parallel Grippers: Design and Characterization
Cited by: 8
Author(s): Andrea Cirillo, Marco Costanzo, Gianluca Laudante, Salvatore Pirozzi
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0153507

Modeling Dynamic Systems with Efficient Ensembles of Process-Based Models
Cited by: 21
Author(s): Nikola Simidjievski, Ljupčo Todorovski, Sašo Džeroski
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0017957

The Notch-2 Gene Is Regulated by Wnt Signaling in Cultured Colorectal Cancer Cells
Cited by: 56
Author(s): Jonas Ungerbäck, Nils Elander, John Grünberg, Mikael Sigvardsson, Peter Söderkvist
Software Mentions: 1
Published: about 13 years ago

10.1093/gigascience/giy097

The chromosome-level genome assemblies of two rattans (Calamus simplicifolius and Daemonorops jenkinsiana)
Cited by: 15
Author(s): Hansheng Zhao, Songbo Wang, Jiongliang Wang, Chunhai Chen, Shijie Hao, Lianfu Chen, Baowei Fei, Kai Han, Rongsheng Li, Chengcheng Shi, Huayu Sun, Sining Wang, Hao Xu, Kebin Yang, Xiurong Xu, Xuemeng Shan, Jingjing Shi, Aiqin Feng, Guangyi Fan, Xin Liu, Shancen Zhao, Chi Zhang, Qiang Gao, Zhimin Gao, Zehui Jiang
Software Mentions: 1
Published: almost 6 years ago

Ecosyste.ms: Papers

Projects: pypi: lib

Papers Mentioning lib 26