Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Plugins

https://packages.ecosyste.ms/registries/pypi.org/packages/Plugins

Easily add hooks and plugins to your applications
1 version
Latest release: about 1 year ago

Papers Mentioning Plugins 30

10.3389/fphys.2015.00026
OpenCOR: a modular and interoperable approach to computational biology
Cited by: 71
Author(s): Alan Garny, Peter Hunter
Software Mentions: 6
Published: almost 10 years ago
10.1016/j.xpro.2021.100544
Preparation of the intact rodent organ of Corti for RNAscope and immunolabeling, confocal microscopy, and quantitative analysis
Cited by: 1
Author(s): Daniël O. J. Reijntjes, J. Lukas Breitzler, Dora Persic, Sonja J. Pyott
Software Mentions: 3
Published: over 3 years ago
10.1186/1471-2105-12-145
FIND: A new software tool and development platform for enhanced multicolor flow analysis
Cited by: 8
Author(s): Shareef M Dabdoub, William C. Ray, Sheryl S. Justice
Software Mentions: 3
Published: over 13 years ago
10.3389/fendo.2018.00666
An Optimized Approach to Perform Bone Histomorphometry
Cited by: 42
Author(s): Deeksha Malhan, Matthias Muelke, Sebastian Rosch, Annemarie B. Schaefer, Felix Merboth, David Weisweiler, Christian Heiß, Ignacio Arganda‐Carreras, Thaqif El Khassawna
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pbio.2004812
Roles of fibronectin isoforms in neonatal vascular development and matrix integrity
Cited by: 25
Author(s): Heena Kumra, Laetitia Sabatier, Amani Hassan, Takao Sakai, Deane F. Mosher, Jürgen Brinckmann, Dieter P. Reinhardt
Software Mentions: 2
Published: over 6 years ago
10.1186/1471-2164-10-S2-S6
BioNetBuilder2.0: bringing systems biology to chicken and other model organisms
Cited by: 22
Author(s): Jay H. Konieczka, Kevin Drew, Alex Pine, Kevin Belasco, Sean Davey, Tatiana A. Yatskievych, Richard Bonneau, Parker B. Antin
Software Mentions: 2
Published: over 15 years ago
10.1016/j.trstmh.2012.05.004
Application of ImageJ program to the enumeration of Orientia tsutsugamushi organisms cultured in vitro
Cited by: 17
Author(s): Sontana Siritantikorn, Suthatip Jintaworn, Sansanee Noisakran, Yupin Suputtamongkol, Daniel Paris, Stuart D. Blacksell
Software Mentions: 2
Published: about 12 years ago
10.1016/j.carres.2018.04.008
Synthesis of glyceryl glycosides related to A-type prymnesin toxins
Cited by: 4
Author(s): Edward S. Hems, Sergey A. Nepogodiev, Martin Rejzek, Robert A. Field
Software Mentions: 2
Published: over 6 years ago
10.1155/2013/798743
Predicting the DPP-IV Inhibitory ActivitypIC50Based on Their Physicochemical Properties
Cited by: 5
Author(s): Tianyu Gu, Xiaoyan Yang, Minjie Li, Milin Wu, Qiang Su, Wei Lu, Yuhui Zhang
Software Mentions: 2
Published: almost 12 years ago
10.1186/s40478-018-0536-y
Systemic inhibition of the membrane attack complex impedes neuroinflammation in chronic relapsing experimental autoimmune encephalomyelitis
Cited by: 38
Author(s): Iliana Michailidou, Aldo Jongejan, Jeroen Vreijling, Theodosia Georgakopoulou, Marit B. de Wissel, Ruud A. Wolterman, Patrick Ruizendaal, Ngaisah Klar-Mohamad, Anita E. Grootemaat, Daisy I. Picavet, Vinod Kumar, Cees van Kooten, Trent M. Woodruff, B. Paul Morgan, Nicole N. van der Wel, Valeria Ramaglia, Kees Fluiter, Frank Baas
Software Mentions: 2
Published: over 6 years ago
10.3389/fmicb.2017.02177
The Opportunistic Pathogen Vibrio vulnificus Produces Outer Membrane Vesicles in a Spatially Distinct Manner Related to Capsular Polysaccharide
Cited by: 28
Author(s): Cheri M. Hampton, Ricardo C. Guerrero-Ferreira, Rachel E. Storms, Jeannette V. Taylor, Hong Yi, Paul A. Gulig, Elizabeth Wright
Software Mentions: 2
Published: about 7 years ago
10.3390/v13091778
Evidence That the Adenovirus Single-Stranded DNA Binding Protein Mediates the Assembly of Biomolecular Condensates to Form Viral Replication Compartments
Cited by: 9
Author(s): Paloma Hidalgo, Arturo Pimentel, Diana Mojica-Santamaría, Konstantin von Stromberg, Helga Hofmann-Sieber, Christian Lona-Arrona, Thomas Dobner, Rafael González
Software Mentions: 2
Published: about 3 years ago
10.12688/wellcomeopenres.16619.2
BoneJ2 - refactoring established research software
Cited by: 20
Author(s): Richard Domander, Alessandro Felder, Michael Doube
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-020-68625-8
Analysis of the foveal microvasculature in sickle cell disease using swept-source optical coherence tomography angiography
Cited by: 8
Author(s): azzeddine Mokrane, Gaspard Gazeau, Vincent Lévy, Franck Fajnkuchen, Audrey Giocanti-Aurégan
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms21041253
Density Functional Theory, Chemical Reactivity, Pharmacological Potential and Molecular Docking of Dihydrothiouracil-Indenopyridopyrimidines with Human-DNA Topoisomerase II
Cited by: 20
Author(s): Mohamed E. Elshakre, Mahmoud A. Noamaan, H. Moustafa, Haider Butt
Software Mentions: 1
Published: over 4 years ago
10.3791/56162
Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench
Cited by: 7
Author(s): Michele C. Darrow, Imanol Luengo, Mark Basham, Matthew C. Spink, Sarah Irvine, A. P. French, Alun Ashton, Elizabeth Duke
Software Mentions: 1
Published: about 7 years ago
10.3791/56142
Real-time <em>In Vivo </em>Recording of <em>Arabidopsis</em> Calcium Signals During Insect Feeding Using a Fluorescent Biosensor
Cited by: 5
Author(s): Thomas R. Vincent, James Canham, Masatsugu Toyota, Marieta Avramova, Sam T. Mugford, Simon Gilroy, Anthony J. Miller, Saskia A. Hogenhout, Dale Sanders
Software Mentions: 1
Published: about 7 years ago
10.32598/bcn.9.10.365
Curcumin Effects on Memory Impairment and Restoration of Irregular Neuronal Distribution in the Hippocampal CA1 Region After Global Cerebral Ischemia in Male Rats
Cited by: 13
Author(s): Leila Kamali Dolatabadi, Masoumeh Emamghoreishi, Mohammad Reza Namavar, Hamze Badeli Sarkala
Software Mentions: 1
Published: almost 5 years ago
10.1042/BSR20180698
An accurate and cost-effective alternative method for measuring cell migration with the circular wound closure assay
Cited by: 26
Author(s): Michael L. De Ieso, Jinxin V. Pei
Software Mentions: 1
Published: about 6 years ago
10.1007/s00429-016-1316-8
Employing an open-source tool to assess astrocyte tridimensional structure
Cited by: 61
Author(s): Geovan Tavares, Manuella Martins, J. H. Correia, Vanessa Morais Sardinha, Sónia Guerra‐Gomes, Sofia Pereira das Neves, Fernanda Marques, Nuno Sousa, João Filipe Oliveira
Software Mentions: 1
Published: about 8 years ago
10.3390/molecules21030332
Investigation of the Pyridinium Ylide—Alkyne Cycloaddition as a Fluorogenic Coupling Reaction
Cited by: 13
Author(s): Simon Bonte, Ioana Otilia Ghinea, Rodica Mihaela Dinică, Isabelle Baussanne, Martine Demeunynck
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pcbi.1006239
A local uPAR-plasmin-TGFβ1 positive feedback loop in a qualitative computational model of angiogenic sprouting explains the in vitro effect of fibrinogen variants
Cited by: 2
Author(s): Sonja E. M. Boas, J. Carvalho, Marloes van den Broek, Ester M. Weijers, Marie‐José Goumans, Pieter Koolwijk, Roeland Merks
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pcbi.1004823
A New Fiji-Based Algorithm That Systematically Quantifies Nine Synaptic Parameters Provides Insights into Drosophila NMJ Morphometry
Cited by: 28
Author(s): Bonnie Nijhof, Anna Castells-Nobau, Louis Wolf, Jolanda M. Scheffer-de Gooyert, Ignacio Monedero, Laura Torroja, Lluís Coromina, Jeroen van der Laak, Annette Schenck
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0046063
Inhibition of poly(ADP-ribose) Polymerase Interferes with Trypanosoma cruzi Infection and Proliferation of the Parasite
Cited by: 19
Author(s): Salomé Catalina Vilchez Larrea, T. Haikarainen, Mohit Narwal, Mariana Schlesinger, Harikanth Venkannagari, Mirtha M. Flawiá, Silvia Hebe Fernandez Villamil, L. Lehtiö
Software Mentions: 1
Published: about 12 years ago
10.1186/1746-1596-8-92
Analyzing huge pathology images with open source software
Cited by: 89
Author(s): Christophe Deroulers, David Ameisen, Mathilde Badoual, Chloé Gerin, Alexandre Granier, Marc Lartaud
Software Mentions: 1
Published: over 11 years ago
10.3389/fneur.2020.00242
Ethionine Suppresses Mitochondria Autophagy and Induces Apoptosis via Activation of Reactive Oxygen Species in Neural Tube Defects
Cited by: 6
Author(s): Li Zhang, Yanting Dong, Wenzhuo Wang, Taoran Zhao, Tingjuan Huang, Ajab Khan, Lei Wang, Zhizhen Liu, Jun Xie, Bo Niu
Software Mentions: 1
Published: over 4 years ago
10.3389/fnins.2018.00907
Neuropeptides SP and CGRP Underlie the Electrical Properties of Acupoints
Cited by: 18
Author(s): Yu Fan, Do-Hee Kim, Yeonhee Ryu, Suchan Chang, Bong Hyo Lee, Chae Ha Yang, Hee Young Kim
Software Mentions: 1
Published: almost 6 years ago
10.3389/frobt.2018.00046
Markerless Eye-Hand Kinematic Calibration on the iCub Humanoid Robot
Cited by: 0
Author(s): Pedro Vicente, Lorenzo Jamone, Alexandre Bernardino
Software Mentions: 1
Published: over 6 years ago
10.1080/14756366.2017.1347784
Design and synthesis of benzopyran-based inhibitors of the hypoxia-inducible factor-1 pathway with improved water solubility
Cited by: 7
Author(s): Jalisa H. Ferguson, Zeus A. De los Santos, Saroja N. Devi, Štefan Kaluz, Erwin G. Van Meir, Sarah K. Zingales, Binghe Wang
Software Mentions: 1
Published: almost 8 years ago