Ecosyste.ms: Papers

10.1371/journal.pone.0232822

SimSurvey: An R package for comparing the design and analysis of surveys by simulating spatially-correlated populations
Cited by: 5
Author(s): Paul M. Regular, Gregory J. Robertson, Keith P. Lewis, Jonathan Babyn, Brian Healey, Fran Mowbray
Software Mentions: 17
Published: over 4 years ago

10.1002/ece3.7625

Genetic differentiation and signatures of local adaptation revealed by RADseq for a highly dispersive mud crab <i>Scylla olivacea</i> (Herbst, 1796) in the Sulu Sea
Cited by: 4
Author(s): Michael John Mendiola, Rachel Ravago-Gotanco
Software Mentions: 12
Published: over 3 years ago

10.7717/peerj.12063

Dongsha Atoll is an important stepping-stone that promotes regional genetic connectivity in the South China Sea
Cited by: 3
Author(s): Shang-Yin Vanson Liu, Jacob Green, Dana Briggs, Ruth Hastings, Ylva Jondelius, Skylar Kensinger, Hannah Leever, Sophia Santos, Trevor Throne, Chi Cheng, Hawis Madduppa, Robert J. Toonen, Michelle R. Gaither, Eric D. Crandall
Software Mentions: 8
Published: about 3 years ago

10.1002/ece3.3906

Influence of northern limit range on genetic diversity and structure in a widespread North American tree, sugar maple (<i>Acer saccharum</i>Marshall)
Cited by: 11
Author(s): Noémie Graignic, Francine Tremblay, Yves Bergeron
Software Mentions: 7
Published: almost 7 years ago

10.1002/ece3.6175

Biome stability predicts population structure of a southern African aridland bird species
Cited by: 8
Author(s): Guinevere O. U. Wogan, Gary Voelker, Graeme Oatley, Rauri C. K. Bowie
Software Mentions: 6
Published: over 4 years ago

10.1093/gigascience/giz030

Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes
Cited by: 73
Author(s): Matthew A. Conte, Rajesh Joshi, Emily C. Moore, Sri Pratima Nandamuri, William J Gammerdinger, Reade B. Roberts, Karen L. Carleton, Sigbjørn Lien, Thomas D. Kocher
Software Mentions: 6
Published: over 5 years ago

10.1111/eva.12712

A coalescent sampler successfully detects biologically meaningful population structure overlooked by <i>F</i> ‐statistics
Cited by: 15
Author(s): Eric D. Crandall, Robert J. Toonen, Kimberly A. Selkoe
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.4952

Population genomics of rapidly invading lionfish in the Caribbean reveals signals of range expansion in the absence of spatial population structure
Cited by: 20
Author(s): Eleanor K. Bors, Santiago Herrera, James A. Morris, Timothy M. Shank
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.2646

Mountains too high and valleys too deep drive population structuring and demographics in a Qinghai–Tibetan Plateau frog <i>Nanorana pleskei</i> (Dicroglossidae)
Cited by: 16
Author(s): Weiwei Zhou, Jing Jin, Jun Wu, Hong‐Man Chen, Juping Yang, Robert W. Murphy, Jing Che
Software Mentions: 5
Published: almost 8 years ago

10.1111/j.1420-9101.2010.02223.x

Similar evolutionary potentials in an obligate ant parasite and its two host species
Cited by: 30
Author(s): Pleuni S. Pennings, Alexandra Achenbach, Susanne Foitzik
Software Mentions: 5
Published: almost 14 years ago

10.1002/ece3.3233

Population structure of a widespread bat (<i>Tadarida brasiliensis</i>) in an island system
Cited by: 22
Author(s): Kelly A. Speer, Brandi Jo Petronio, Nancy B. Simmons, Rebecca Richey, Kristin Magrini, J. Angel Soto‐Centeno, David L. Reed
Software Mentions: 5
Published: over 7 years ago

10.7554/eLife.52614

Wikidata as a knowledge graph for the life sciences
Cited by: 64
Author(s): Andra Waagmeester, Gregory S. Stupp, Sebastian Burgstaller-Muehlbacher, Benjamin M. Good, Malachi Griffith, Obi L. Griffith, Kristina Hanspers, Henning Hermjakob, Toby Hudson, Kevin Hybiske, Sarah M. Keating, Magnus Manske, Michael Mayers, Daniel Mietchen, Elvira Mitraka, Alexander Pico, Tim Putman, Anders Riutta, Núria Queralt-Rosiñach, Lynn M. Schriml, Thomas Shafee, Denise Slenter, Ralf Stephan, Katherine Thornton, Ginger Tsueng, Roger Tu, Sabah Ul-Hasan, Egon Willighagen, Chunlei Wu, Andrew I. Su
Software Mentions: 4
Published: over 4 years ago

10.1093/bib/bbv019

Optimization of miRNA-seq data preprocessing
Cited by: 100
Author(s): Susan H. Tam, Ming‐Sound Tsao, John Douglas Mcpherson
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.6306

Small coastal streams—Critical reservoirs of genetic diversity for trout (<i>Salmo trutta</i>L.) in the face of increasing anthropogenic stressors
Cited by: 1
Author(s): R. Andrew King, Bruce Stockley, Jamie R. Stevens
Software Mentions: 4
Published: over 4 years ago

10.1002/ece3.5656

To remain or leave: Dispersal variation and its genetic consequences in benthic freshwater invertebrates
Cited by: 2
Author(s): Paolo Ruggeri, Ellen Pasternak, Beth Okamura
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2020.576023

Population Genetic Structure and Connectivity of the European Lobster Homarus gammarus in the Adriatic and Mediterranean Seas
Cited by: 4
Author(s): Mišo Pavičić, Iva Žužul, Sanja Matić‐Skoko, Alexandros Triantafyllidis, Fabio Grati, Eric Durieux, Igor Čelić, Tanja Šegvić-Bubić
Software Mentions: 2
Published: almost 4 years ago

10.1590/1678-4685-gmb-2016-0025

Genetic diversity of Morato's Digger Toad, Proceratophrys moratoi: spatial structure, gene flow, effective size and the need for differential management strategies of populations
Cited by: 5
Author(s): Maysa Silva Arruda, William Pinheiro da Costa, Shirlei Maria Recco‐Pimentel
Software Mentions: 2
Published: over 7 years ago

10.1038/srep26613

Population dynamics of Agriophyllum squarrosum, a pioneer annual plant endemic to mobile sand dunes, in response to global climate change
Cited by: 29
Author(s): Qian Chen, Huajun Yin, Yong Shi, Jiecai Zhao, ChengLiang Yin, Wenhao Luo, Zhibao Dong, Guoxiong Chen, Xiaobing Yan, Xiaoru Wang, Xiaofei Ma
Software Mentions: 2
Published: over 8 years ago

10.1038/hdy.2017.14

Contrasting patterns of population structure and gene flow facilitate exploration of connectivity in two widely distributed temperate octocorals
Cited by: 23
Author(s): Lyndsey P. Holland, Tom L. Jenkins, Jamie R. Stevens
Software Mentions: 2
Published: over 7 years ago

10.2196/resprot.9850

Toward Increasing Engagement in Substance Use Data Collection: Development of the Substance Abuse Research Assistant App and Protocol for a Microrandomized Trial Using Adolescents and Emerging Adults
Cited by: 40
Author(s): Mashfiqui Rabbi, Meredith L Philyaw-Kotov, Rebecca M. Cunningham, Erin E. Bonar, Inbal Nahum‐Shani, Predrag Klasnja, Maureen A. Walton, Susan A. Murphy
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.5233

Conservation of genetic uniqueness in remaining populations of red squirrels (<i>Sciurus vulgaris</i>L.) in the South of England
Cited by: 8
Author(s): Emilie A. Hardouin, Miguel Baltazar‐Soares, Anna‐Katarina Schilling, Helen Butler, Oxala García‐Rodríguez, Eloise Crowley, Weijun Liang, Anna Meredith, Peter W. W. Lurz, Jade Forster, Robert E. Kenward, Kathy H. Hodder
Software Mentions: 1
Published: over 5 years ago

10.1093/bioinformatics/btu201

Efficient Bayesian inference under the structured coalescent
Cited by: 112
Author(s): Timothy G. Vaughan, Denise Kühnert, Alex Popinga, David Welch, Alexei J. Drummond
Software Mentions: 1
Published: over 10 years ago

10.1111/eva.13064

Evolutionary legacy of a forest plantation tree species (<i>Pinus armandii</i>): Implications for widespread afforestation
Cited by: 12
Author(s): Yafei Jia, Richard I. Milne, Jing Zhu, Lian‐Ming Gao, Guang‐Fu Zhu, Guifang Zhao, Jie Liu, Zhong Hu Li
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0235120

Genetic interactions regulating seed phytate and oligosaccharides in soybean (Glycine max L.)
Cited by: 7
Author(s): Neelam Redekar, Natasha Glover, R. M. Biyashev, Bo‐Keun Ha, Victor Raboy, M. A. Saghai Maroof
Software Mentions: 1
Published: over 4 years ago

10.1002/acm2.13120

Development and clinical validation of a robust knowledge‐based planning model for stereotactic body radiotherapy treatment of centrally located lung tumors
Cited by: 8
Author(s): Justin Visak, Ronald C. McGarry, Marcus E. Randall, Damodar Pokhrel
Software Mentions: 1
Published: almost 4 years ago

10.1007/s11031-018-9687-1

The implicit power motive predicts decisions in line with perceived instrumentality
Cited by: 8
Author(s): Peter F. Stoeckart, Madelijn Strick, Erik Bijleveld, Henk Aarts
Software Mentions: 1
Published: over 6 years ago