Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: micromanager
https://packages.ecosyste.ms/registries/pypi.org/packages/micromanager
Policy enforcement tool for GCP
10 versions
Latest release: over 5 years ago
21 downloads last month
Papers Mentioning micromanager 28
10.7554/eLife.15477
Increasing Notch signaling antagonizes PRC2-mediated silencing to promote reprograming of germ cells into neuronsCited by: 31
Author(s): Stefanie Seelk, Irene Adrian‐Kalchhauser, Balázs Hargitai, Martina Hajdůšková, Silvia Gutnik, Baris Tursun, Rafal Ciosk
Software Mentions: 4
Published: about 8 years ago
10.1002/1878-0261.12762
Epithelial/mesenchymal heterogeneity of high‐grade serous ovarian carcinoma samples correlates with miRNA let‐7 levels and predicts tumor growth and metastasisCited by: 19
Author(s): Evgeny Chirshev, Nozomi Hojo, Antonella Bertucci, Linda Sanderman, Anthony Nguyen, Hanmin Wang, Tise Suzuki, Emmanuel Brito, Shannalee R. Martinez, Christine Castañón, Saied Mirshahidi, Marcelo E. Vazquez, Pamela Wat, Kerby C. Oberg, Yevgeniya Ioffe, Juli Unternaehrer
Software Mentions: 2
Published: over 4 years ago
10.7554/eLife.48183
Spatiotemporal dynamics and heterogeneity of renal lymphatics in mammalian development and cystic kidney diseaseCited by: 41
Author(s): Daniyal J. Jafree, Dale Moulding, Maria Kolatsi-Joannou, Nuria Perretta Tejedor, Karen Price, Natalie J. Milmoe, Claire Walsh, Rosa Maria Correra, Paul J D Winyard, Peter C. Harris, Christiana Ruhrberg, Simon Walker‐Samuel, Paul R. Riley, Adrian S. Woolf, Peter Scambler, David A. Long
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pgen.1009346
Increased dopaminergic neurotransmission results in ethanol dependent sedative behaviors in Caenorhabditis elegansCited by: 13
Author(s): Pallavi Pandey, Anuradha Singh, Harjot Kaur, Anindya Ghosh-Roy, Kavita Babu
Software Mentions: 2
Published: almost 4 years ago
10.1186/s13072-019-0265-x
Citrullination of HP1γ chromodomain affects association with chromatinCited by: 17
Author(s): Meike Wiese, Andrew J. Bannister, Srinjan Basu, Wayne Boucher, Kai J. Wohlfahrt, Maria A. Christophorou, Michael L. Nielsen, David Klenerman, Ernest D. Laue, Tony Kouzarides
Software Mentions: 2
Published: over 5 years ago
10.3389/fphys.2018.01758
Xenopus Hybrids Provide Insight Into Cell and Organism Size ControlCited by: 11
Author(s): Romain Gibeaux, Kelly E. Miller, Rachael Acker, Taejoon Kwon, Rebecca Heald
Software Mentions: 2
Published: almost 6 years ago
10.1242/jcs.226969
An essential role for dNTP homeostasis following CDK-induced replication stressCited by: 15
Author(s): Chen Chun Pai, Kuo–Feng Hsu, Samuel C. Durley, Andrea Keszthelyi, Stephen Kearsey, Charalampos Rallis, Lisa K. Folkes, Rachel S. Deegan, Sarah E. Wilkins, Sophia X. Pfister, Nagore de León, Christopher J. Schofield, Jürg Bähler, Antony Carr, Timothy C. Humphrey
Software Mentions: 2
Published: almost 6 years ago
10.1186/s13287-020-01682-y
A novel role of vitronectin in promoting survival of mesenchymal stem cells under serum deprivation stressCited by: 14
Author(s): Umesh Goyal, Malancha Ta
Software Mentions: 2
Published: over 4 years ago
10.1128/mSphere.00231-19
A Tripartite, Hierarchical Sigma Factor Cascade Promotes Hormogonium Development in the Filamentous Cyanobacterium Nostoc punctiformeCited by: 21
Author(s): Alfonso González, Kelsey W. Riley, Thomas V. Harwood, Esthefani G. Zuniga, Douglas D. Risser
Software Mentions: 2
Published: over 5 years ago
10.7554/eLife.54903
Maf and Mafb control mouse pallial interneuron fate and maturation through neuropsychiatric disease gene regulationCited by: 18
Author(s): Emily Ling-Lin Pai, Jin Chen, Siavash Fazel Darbandi, Frances S. Cho, Jiapei Chen, Susan Lindtner, Julia Chu, Jeanne T. Paz, Daniel Vogt, Mercedes F. Paredes, John L.R. Rubenstein
Software Mentions: 2
Published: over 4 years ago
10.1002/JLB.1AB0618-232R
HoxB8 neutrophils replicate Fcγ receptor and integrin-induced neutrophil signaling and functionsCited by: 16
Author(s): Julia Y. Chu, Barrett L. McCormick, Greta Mazelyte, Melina Michael, Sonja Vermeren
Software Mentions: 1
Published: about 6 years ago
10.3390/antiox9020155
Biological Redox Impact of Tocopherol Isomers Is Mediated by Fast Cytosolic Calcium Increases in Living Caco-2 CellsCited by: 4
Author(s): Miltha Hidalgo, Vania Rodríguez, Christine Kreindl, Omar Porras
Software Mentions: 1
Published: almost 5 years ago
10.1111/imm.13221
Hallmarks of NLRP3 inflammasome activation are observed in organotypic hippocampal slice cultureCited by: 11
Author(s): Christopher Hoyle, Elena Redondo‐Castro, James Cook, Te‐Chen Tzeng, Stuart M. Allan, David Brough, Eloïse Lemarchand
Software Mentions: 1
Published: over 4 years ago
10.1172/jci.insight.143472
Desmin interacts with STIM1 and coordinates Ca2+ signaling in skeletal muscleCited by: 11
Author(s): Hengtao Zhang, Victoria Bryson, Chaojian Wang, TianYu Li, Jaclyn P. Kerr, Rebecca J. Wilson, Deborah M. Muoio, Robert J. Bloch, Chris W. Ward, Paul B. Rosenberg
Software Mentions: 1
Published: about 3 years ago
10.1016/j.molcel.2016.11.006
The Mitotic Checkpoint Complex Requires an Evolutionary Conserved Cassette to Bind and Inhibit Active APC/CCited by: 42
Author(s): Barbara Fiore, Claudia Wurzenberger, Norman E. Davey, Jonathon Pines
Software Mentions: 1
Published: almost 8 years ago
10.1016/j.redox.2018.02.023
Insights into the HyPer biosensor as molecular tool for monitoring cellular antioxidant capacityCited by: 9
Author(s): Helen Hernández, Alejandra V. Parra, Nicolás Tobar, Jéssica Molina, Violeta Kallens, Miltha Hidalgo, Diego Varela, Jorge Martı́nez, Omar Porras
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-23928-9
Collective electrical oscillations of a diatom population induced by dark stressCited by: 9
Author(s): Paulo R. F. Rocha, Alexandra Silva, Lia Godinho, Willem Dane, Pedro Estrela, L.K.J. Vandamme, José B. Pereira-Leal, Dago M. de Leeuw, Ricardo B. Leite
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-020-61361-z
Altered Adhesion and Migration of Human Mesenchymal Stromal Cells under Febrile Temperature Stress Involves NF-κβ PathwayCited by: 7
Author(s): Ankita Sen, Malancha Ta
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-67958-8
Fluorescence-guided resection of tumors in mouse models of oral cancerCited by: 13
Author(s): Paula Demétrio De Souza França, Navjot Guru, Sheryl Roberts, Susanne Kossatz, Christian Mason, Márcio Abrahäo, Ronald Ghossein, Snehal G. Patel, Thomas Reiner
Software Mentions: 1
Published: over 4 years ago
10.7554/eLife.54930
Cell lineage-dependent chiral actomyosin flows drive cellular rearrangements in early Caenorhabditis elegans developmentCited by: 26
Author(s): Lokesh Pimpale, Teije C. Middelkoop, Alexander Mietke, Stephan W. Grill
Software Mentions: 1
Published: over 4 years ago
10.7554/eLife.27069
Magnetothermal genetic deep brain stimulation of motor behaviors in awake, freely moving miceCited by: 114
Author(s): Rahul Munshi, Shahnaz Qadri, Qian Zhang, Idoia Castellanos-Rubio, Pablo del Pino, Arnd Pralle
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pbio.3000447
V1 interneurons regulate the pattern and frequency of locomotor-like activity in the neonatal mouse spinal cordCited by: 23
Author(s): Mélanie Falgairolle, Michael J. O’Donovan
Software Mentions: 1
Published: about 5 years ago
10.3390/jimaging5070063
Imaging Membrane Curvature inside a FcεRI-Centric Synapse in RBL-2H3 Cells Using TIRF Microscopy with Polarized ExcitationCited by: 6
Author(s): Raphael C. S. Machado, Justin Bendesky, Madison Brown, Kathrin Spendier, Guy M. Hagen
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0119124
Amount of Colicin Release in Escherichia coli Is Regulated by Lysis Gene Expression of the Colicin E2 OperonCited by: 26
Author(s): Andreas Mäder, Benedikt von Bronk, Benedikt Ewald, Sara Kesel, Karin Schnetz, Erwin Frey, Madeleine Opitz
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0154640
A Microfiltration Device for Urogenital Schistosomiasis DiagnosticsCited by: 4
Author(s): Yuan Xiao, Yi Lu, Michael H. Hsieh, Joseph C. Liao, Pak Kin Wong
Software Mentions: 1
Published: over 8 years ago
10.1016/j.celrep.2019.01.031
Mafb and c-Maf Have Prenatal Compensatory and Postnatal Antagonistic Roles in Cortical Interneuron Fate and FunctionCited by: 38
Author(s): Emily Ling Lin Pai, Daniel Vogt, Alexandra Clemente-Perez, Gabriel L. McKinsey, Frances S. Cho, Jiang Hu, Matt Wimer, Anirban Paul, Siavash Fazel Darbandi, Ramón Pla, Tomasz J. Nowakowski, Lisa V. Goodrich, Jeanne T. Paz, John L.R. Rubenstein
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.celrep.2020.108177
Common Fragile Sites Are Characterized by Faulty Condensin Loading after Replication StressCited by: 26
Author(s): Lora Boteva, Ryu-Suke Nozawa, Catherine Naughton, Kumiko Samejima, William C. Earnshaw, Nick Gilbert
Software Mentions: 1
Published: about 4 years ago
10.1016/j.celrep.2017.08.058
Set2 Methyltransferase Facilitates DNA Replication and Promotes Genotoxic Stress Responses through MBF-Dependent TranscriptionCited by: 25
Author(s): Chen-Chun Pai, Anastasiya Kishkevich, Rachel S. Deegan, Andrea Keszthelyi, Lisa K. Folkes, Stephen Kearsey, Nagore de León, Ignacio Soriano, Robertus A.M. de Bruin, Antony Carr, Timothy C. Humphrey
Software Mentions: 1
Published: about 7 years ago