pypi: FishTaco | Projects | Ecosyste.ms: Papers

10.1186/s40168-019-0714-6

A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments
Cited by: 78
Author(s): Jiarui Chen, Shelby E. McIlroy, Anand Asundi, David M. Baker, Gianni Panagiotou
Software Mentions: 11
Published: over 5 years ago

10.3389/fmicb.2021.713234

Metabolomic Predictors of Non-alcoholic Steatohepatitis and Advanced Fibrosis in Children
Cited by: 12
Author(s): Kattayoun Kordy, Fan Li, David J Lee, Jason M. Kinchen, Michael Jew, Maria Eduarda La Rocque, Sara Zabih, Mónica Saavedra, Cora L. Woodward, Nicole J Cunningham, Nicole H. Tobin, Grace M. Aldrovandi
Software Mentions: 9
Published: about 3 years ago

10.1186/s40168-021-01044-7

Characterization of the public transit air microbiome and resistome reveals geographical specificity
Cited by: 20
Author(s): Marcus H. Y. Leung, Xinzhao Tong, Kari Oline Bøifot, Daniela Bezdan, Daniel Butler, David Danko, Jostein Gohli, D. C. Green, Mark Hernandez, Frank J. Kelly, Shawn Levy, Gabriella Mason-Buck, Marina Nieto-Caballero, Denise Syndercombe‐Court, Klas I. Udekwu, Brian P. Young, Christopher E. Mason, Marius Dybwad, P. K. H. Lee
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0207002

Re-purposing 16S rRNA gene sequence data from within case paired tumor biopsy and tumor-adjacent biopsy or fecal samples to identify microbial markers for colorectal cancer
Cited by: 24
Author(s): Mansi Shah, Todd Z. DeSantis, José‐Miguel Yamal, Tiffany L. Weir, Elizabeth P. Ryan, Julia Cope, Emily B. Hollister
Software Mentions: 6
Published: almost 6 years ago

10.1186/s40168-017-0325-z

Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome
Cited by: 71
Author(s): David Casero, Kirandeep Gill, Vijayalakshmi Sridharan, Igor Koturbash, Gregory A. Nelson, Martin Hauer‐Jensen, Marjan Boerma, Jonathan Braun, Amrita K. Cheema
Software Mentions: 6
Published: about 7 years ago

10.1080/19490976.2020.1752605

Metagenomics reveals impact of geography and acute diarrheal disease on the Central Indian human gut microbiome
Cited by: 20
Author(s): Tanya Monaghan, Tim J. Sloan, Stephen R. Stockdale, Adam Blanchard, Richard D. Emes, Mark H. Wilcox, Rima Biswas, Rupam Nashine, Sonali Manke, Jinal Gandhi, Pratishtha Jain, Shrejal Bhotmange, Shrikant Ambalkar, Ashish Satav, Lorraine A. Draper, Colin Hill, Rajpal S. Kashyap
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.63642

Microbial genetic and transcriptional contributions to oxalate degradation by the gut microbiota in health and disease
Cited by: 23
Author(s): Menghan Liu, Joseph C. Devlin, Jiyuan Hu, Angelina Volkova, Thomas Battaglia, Melody Ho, John R. Asplin, Allyson L. Byrd, P’ng Loke, Huilin Li, Kelly V. Ruggles, Aristotelis Tsirigos, Martin J. Blaser, Lama Nazzal
Software Mentions: 5
Published: over 3 years ago

10.1111/1751-7915.13353

Microbial communities in swine lungs and their association with lung lesions
Cited by: 24
Author(s): Tao Huang, Mingpeng Zhang, Xinkai Tong, Jiaqi Chen, Guorong Yan, Shouguo Fang, Yuanmei Guo, Bin Yang, Shijun Xiao, Congying Chen, Lusheng Huang, Huashui Ai
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.4458

Characterization of the salivary microbiome in people with obesity
Cited by: 63
Author(s): Yujia Wu, Xiaopei Chi, Qian Zhang, Feng Chen, Xuliang Deng
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms7110516

The Signature Microbiota Drive Rumen Function Shifts in Goat Kids Introduced to Solid Diet Regimes
Cited by: 34
Author(s): Xiaokang Lv, Jianmin Chai, Qiyu Diao, Wenqin Huang, Yan Zhuang, Naifeng Zhang
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2021.698900

Association of Gut Microbiota and Metabolites With Disease Progression in Children With Biliary Atresia
Cited by: 12
Author(s): Wei Song, Li‐Ying Sun, Zhaoqiong Zhu, Lin Wei, Wei Qu, Zhi-Gui Zeng, Ying Liu, Haiming Zhang, Wei Guo
Software Mentions: 3
Published: about 3 years ago

10.1186/s12866-021-02305-z

Infants with cystic fibrosis have altered fecal functional capacities with potential clinical and metabolic consequences
Cited by: 5
Author(s): Alexander Eng, Hillary S. Hayden, Charles E. Pope, M. Brittnacher, Anh T. Vo, Eli Weiss, Kyle R. Hager, Daniel H. Leung, Sonya L. Heltshe, Daniel Raftery, Samuel I. Miller, Lucas R. Hoffman, Elhanan Borenstein
Software Mentions: 3
Published: about 3 years ago

10.1186/s40168-017-0260-z

Differences in gut microbial composition correlate with regional brain volumes in irritable bowel syndrome
Cited by: 189
Author(s): Jennifer S. Labus, Emily B. Hollister, Jonathan P. Jacobs, Kyleigh Kirbach, Numan Oezguen, Abha R. Gupta, Jonathan R. Acosta, Ruth Ann Luna, Kjersti M. Aagaard, James Versalovic, Tor Savidge, Elaine Y. Hsiao, Kirsten Tillisch, Emeran A. Mayer
Software Mentions: 3
Published: over 7 years ago

10.3390/ani10040712

Association between Rumen Microbiota and Marbling Score in Korean Native Beef Cattle
Cited by: 13
Author(s): Minseok Kim, Tansol Park, Jin Young Jeong, Youl-Chang Baek, Hyun-Jeong Lee
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2017.01008

Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants
Cited by: 44
Author(s): Christopher J. Stewart, Nicholas D. Embleton, Elizabeth Clements, Pamela N. Luna, Daniel P. Smith, Tatiana Fofanova, Andrew Nelson, Gillian Taylor, Caroline Orr, Joseph F. Petrosino, Janet Berrington, Stephen Cummings
Software Mentions: 3
Published: over 7 years ago

10.1038/s41438-020-00380-3

Enrichment of beneficial cucumber rhizosphere microbes mediated by organic acid secretion
Cited by: 46
Author(s): Teng Wen, Jun Yuan, Xiaoming He, Yue Lin, Qiwei Huang, Qirong Shen
Software Mentions: 3
Published: about 4 years ago

10.1186/s40104-020-00461-2

Dietary energy sources and levels shift the multi-kingdom microbiota and functions in the rumen of lactating dairy cows
Cited by: 22
Author(s): Tansol Park, Lu Ma, Ying Ma, Xinan Zhou, Dengpan Bu, Zhongtang Yu
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2017.01809

Dietary Heme Induces Gut Dysbiosis, Aggravates Colitis, and Potentiates the Development of Adenomas in Mice
Cited by: 103
Author(s): Marco Constante, Gabriela Fragoso, Annie Calvé, Macha Samba-Mondonga, Manuela M. Santos
Software Mentions: 2
Published: about 7 years ago

10.1186/s13073-020-00789-4

Microbial signature in IgE-mediated food allergies
Cited by: 48
Author(s): Michael R. Goldberg, Hadar Mor, Dafna Magid Neriya, Faiga Magzal, Efrat Muller, Michael Y. Appel, Liat Nachshon, Elhanan Borenstein, Snait Tamir, Yoram Louzoun, Ilan Youngster, Arnon Elizur, Omry Koren
Software Mentions: 2
Published: about 4 years ago

10.1186/s12866-017-1055-x

16S rRNA gene-based association study identified microbial taxa associated with pork intramuscular fat content in feces and cecum lumen
Cited by: 45
Author(s): Shouguo Fang, Xingwei Xiong, Ying Su, Lusheng Huang, Congying Chen
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2019.03117

Beyond Taxonomic Analysis of Microbiomes: A Functional Approach for Revisiting Microbiome Changes in Colorectal Cancer
Cited by: 6
Author(s): Mohammad Hossein Norouzi‐Beirami, Sayed-Amir Marashi, Ali Mohammad Banaei-Moghaddam, Kaveh Kavousi
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12916-020-01751-2

The intestinal microbiome, weight, and metabolic changes in women treated by adjuvant chemotherapy for breast and gynecological malignancies
Cited by: 18
Author(s): Atara Uzan-Yulzari, Maya Morr, Hala Tareef-Nabwani, Oren Ziv, Dafna Magid-Neriya, Ran Armoni, Efrat Muller, Anca Leibovici, Elhanan Borenstein, Yoram Louzoun, Ayelet Shai, Omry Koren
Software Mentions: 2
Published: about 4 years ago

10.3389/fonc.2021.679712

Gut Microbiota Dysbiosis Accelerates Prostate Cancer Progression Through Increased LPCAT1 Expression and Enhanced DNA Repair Pathways
Cited by: 15
Author(s): Yuanyuan Liu, Chen Yang, Zheyu Zhang, Haowen Jiang
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2020.00390

Toxicomicrobiomics: The Human Microbiome vs. Pharmaceutical, Dietary, and Environmental Xenobiotics
Cited by: 50
Author(s): Nehal Adel Abdelsalam, Ahmed Ramadan, Marwa T. ElRakaiby, Ramy K. Aziz
Software Mentions: 1
Published: over 4 years ago

10.1128/mSystems.00163-17

Exploring Linkages between Taxonomic and Functional Profiles of the Human Microbiome
Cited by: 58
Author(s): Morgan G. I. Langille
Software Mentions: 1
Published: over 6 years ago

10.1111/1751-7915.13623

The bacterial community and metabolome dynamics and their interactions modulate fermentation process of whole crop corn silage prepared with or without inoculants
Cited by: 64
Author(s): Dongmei Xu, Nian Wang, Marketta Rinne, Wencan Ke, Z.G. Weinberg, Da Mi, Jie Bai, Yixin Zhang, Fuhou Li, Xusheng Guo
Software Mentions: 1
Published: over 4 years ago

Ecosyste.ms: Papers

Projects: pypi: FishTaco

Papers Mentioning FishTaco 26