Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-017-0325-z

https://doi.org/10.1186/s40168-017-0325-z

Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

Cited by: 71
Author(s): David Casero, Kirandeep Gill, Vijayalakshmi Sridharan, Igor Koturbash, Gregory A. Nelson, Martin Hauer‐Jensen, Marjan Boerma, Jonathan Braun, Amrita K. Cheema
Published: over 7 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: MBCluster.Seq
Model-Based Clustering for RNA-seq Data
Papers that mentioned: 8
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: REST
RcmdrPlugin Easy Script Templates
Papers that mentioned: 1,757
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: FishTaco
FishTaco: a metagenomic computational framework, aiming to identify the taxa that are driving functional shifts in microbiomes.
Papers that mentioned: 26