pypi: CABS | Projects | Ecosyste.ms: Papers

10.3390/ijms20030606

Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force Fields
Cited by: 41
Author(s): Maciej Pawel Ciemny, Aleksandra E. Badaczewska-Dawid, Monika Pikuzinska, Andrzej Koliński, Sebastian Kmiecik
Software Mentions: 4
Published: almost 6 years ago

10.1186/1472-6807-9-71

Splitting statistical potentials into meaningful scoring functions: Testing the prediction of near-native structures from decoy conformations
Cited by: 9
Author(s): Patrick Aloy, Baldo Oliva
Software Mentions: 4
Published: almost 16 years ago

10.3390/ijms20225574

Establishing Computational Approaches Towards Identifying Malarial Allosteric Modulators: A Case Study of Plasmodium falciparum Hsp70s
Cited by: 10
Author(s): Arnold Amusengeri, Lindy Astl, Kevin A. Lobb, Gennady M. Verkhivker, Özlem Tastan Bishop
Software Mentions: 3
Published: about 5 years ago

10.1186/s12879-020-05038-y

Abstracts from the International Science Symposium on HIV and Infectious Diseases (ISSHID 2019): Infectious diseases
Cited by: 4
Author(s):
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-37506-6

Mechanism of action of the moonlighting protein EfTu as a Substance P sensor in Bacillus cereus
Cited by: 9
Author(s): Awa Ndiaye, Valérie Borrel, Pierre‐Jean Racine, Thomas Clamens, Ségolène Depayras, Olivier Maillot, Béatrice Schaack, Sylvie Chevalier, Olivier Lesouhaitier, Marc Feuilloley
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0056742

Towards Improved Quality of GPCR Models by Usage of Multiple Templates and Profile-Profile Comparison
Cited by: 50
Author(s): Dorota Latek, Paweł Pasznik, Teresa Carlomagno, Sławomir Filipek
Software Mentions: 2
Published: over 11 years ago

10.1186/1472-6807-7-48

Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily
Cited by: 33
Author(s): Elena M. Ibryashkina, Marina Zakharova, Vladimir B. Baskunov, Ekaterina Bogdanova, Maxim Nagornykh, Marat M Den'mukhamedov, Bogdan S. Melnik, Andrzej Koliński, Dominik Gront, Marcin Feder, Alexander S. Solonin, Janusz M. Bujnicki
Software Mentions: 2
Published: over 17 years ago

10.3390/ijms22147341

Protein–Protein Docking with Large-Scale Backbone Flexibility Using Coarse-Grained Monte-Carlo Simulations
Cited by: 5
Author(s): Mateusz Kurciński, Sebastian Kmiecik, M. Zalewski, Andrzej Koliński
Software Mentions: 2
Published: over 3 years ago

10.1186/s40249-020-00752-w

Reverse vaccinology assisted designing of multiepitope-based subunit vaccine against SARS-CoV-2
Cited by: 54
Author(s): Muhammad Tahir ul Qamar, Farah Shahid, Sadia Aslam, Usman Ali Ashfaq, Sidra Aslam, Israr Fatima, Muhammad Mazhar Fareed, Ali Zohaib, Ling Ling Chen
Software Mentions: 2
Published: about 4 years ago

10.1093/bib/bby080

Protein–peptide docking using CABS-dock and contact information
Cited by: 29
Author(s): Maciej Błaszczyk, Maciej Pawel Ciemny, Andrzej Koliński, Mateusz Kurciński, Sebastian Kmiecik
Software Mentions: 1
Published: about 6 years ago

10.3390/molecules25040808

Targeting Tumors Using Peptides
Cited by: 41
Author(s): Pablo Scodeller, Eliana K. Asciutto
Software Mentions: 1
Published: over 4 years ago

10.3390/molecules26113293

Molecular Dynamics Scoring of Protein–Peptide Models Derived from Coarse-Grained Docking
Cited by: 6
Author(s): M. Zalewski, Sebastian Kmiecik, Michał Koliński
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules200610763

Coarse-Grained Modeling of Peptide Docking Associated with Large Conformation Transitions of the Binding Protein: Troponin I Fragment–Troponin C System
Cited by: 13
Author(s): Jacek Wabik, Mateusz Kurciński, Andrzej Koliński
Software Mentions: 1
Published: over 9 years ago

10.3390/vaccines9060581

An Immunoinformatics Approach for SARS-CoV-2 in Latam Populations and Multi-Epitope Vaccine Candidate Directed towards the World’s Population
Cited by: 8
Author(s): Andrés Felipe Cuspoca, Laura Lorena Díaz, A. Acosta, Marcela Katherine Peñaloza, Yardany Rafael Méndez, Diana Carolina Clavijo, Juvenal Yosa
Software Mentions: 1
Published: over 3 years ago

10.3390/pharmaceutics11020073

Dual Action of the PN159/KLAL/MAP Peptide: Increase of Drug Penetration across Caco-2 Intestinal Barrier Model by Modulation of Tight Junctions and Plasma Membrane Permeability
Cited by: 33
Author(s): Alexandra Bocsik, Ilona Gróf, Lóránd Kiss, Ferenc Ötvös, Ottó Zsíros, Lejla Daruka, Lívia Fülöp, Mónika Vastag, Ágnes Kittel, Norbert Imre, Tamás A. Martinek, Csaba Pál, Piroska Szabó‐Révész, Mária A. Deli
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.1915372116

Reactivation of Epstein–Barr virus by a dual-responsive fluorescent EBNA1-targeting agent with Zn <sup>2+</sup> -chelating function
Cited by: 19
Author(s): Lijun Jiang, Hong Lok Lung, Tao Huang, Rongfeng Lan, Shuai Zha, Lai Sheung Chan, Waygen Thor, Tik Hung Tsoi, Ho Fai Chau, Cecilia Boreström, Steven L. Cobb, Sai Wah Tsao, Zhao Xiang Bian, Ga Lai Law, Wing Tak Wong, William Tai, Wai Yin Chau, Yujun Du, Lucas Tang, Alan Kwok Shing Chiang, Jaap M. Middeldorp, Kwok Wai Lo, Nai Ki Mak, Nicholas J. Long, Ka Leung Wong
Software Mentions: 1
Published: almost 5 years ago

10.1038/srep37532

Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction
Cited by: 42
Author(s): Maciej Pawel Ciemny, Aleksander Dębiński, Marta Paczkowska, Andrzej Koliński, Mateusz Kurciński, Sebastian Kmiecik
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms19113496

Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models
Cited by: 55
Author(s): Sebastian Kmiecik, Maksim Kouza, Aleksandra E. Badaczewska-Dawid, Andrzej Kloczkowski, Andrzej Koliński
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2105-10-407

Protein-protein docking using region-based 3D Zernike descriptors
Cited by: 152
Author(s): Vishwesh Venkatraman, Yuxin Yang, Lee Sael, Daisuke Kihara
Software Mentions: 1
Published: almost 15 years ago

10.3390/ijms22179106

Antisense Peptide Technology for Diagnostic Tests and Bioengineering Research
Cited by: 5
Author(s): Nikola Štambuk, Paško Konjevoda, Josip Pavan
Software Mentions: 1
Published: about 3 years ago

10.1186/1472-6807-10-5

Modeling of loops in proteins: a multi-method approach
Cited by: 36
Author(s): Michał H. Jamróz, Andrzej Koliński
Software Mentions: 1
Published: almost 15 years ago

10.1186/1472-6807-8-36

Contact prediction in protein modeling: Scoring, folding and refinement of coarse-grained models
Cited by: 16
Author(s): Dorota Latek, Andrzej Koliński
Software Mentions: 1
Published: almost 17 years ago

10.1186/1472-6807-7-43

Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field
Cited by: 47
Author(s): Sebastian Kmiecik, Dominik Gront, Andrzej Koliński
Software Mentions: 1
Published: over 17 years ago

10.1093/bioinformatics/btz185

CABS-dock standalone: a toolbox for flexible protein–peptide docking
Cited by: 47
Author(s): Mateusz Kurciński, Maciej Pawel Ciemny, Tymoteusz Oleniecki, Aleksander Kuriata, Aleksandra E. Badaczewska-Dawid, Andrzej Koliński, Sebastian Kmiecik
Software Mentions: 1
Published: over 5 years ago

10.1186/s12938-017-0362-7

Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motif
Cited by: 16
Author(s): Maciej Pawel Ciemny, Mateusz Kurciński, Maciej Błaszczyk, Andrzej Koliński, Sebastian Kmiecik
Software Mentions: 1
Published: over 7 years ago

10.1186/s12938-017-0363-6

A protocol for CABS-dock protein–peptide docking driven by side-chain contact information
Cited by: 7
Author(s): Mateusz Kurciński, Maciej Błaszczyk, Maciej Pawel Ciemny, Andrzej Koliński, Sebastian Kmiecik
Software Mentions: 1
Published: over 7 years ago

10.1016/j.bpj.2014.04.022

Structure Prediction of the Second Extracellular Loop in G-Protein-Coupled Receptors
Cited by: 31
Author(s): Sebastian Kmiecik, Michał H. Jamróz, Michał Koliński
Software Mentions: 1
Published: over 10 years ago

10.1042/BSR20202349

Cytotoxic T-lymphocyte elicited therapeutic vaccine candidate targeting cancer against MAGE-A11 carcinogenic protein
Cited by: 7
Author(s): Neeraj Kumar, Damini Sood, Aditya Gupta, Niraj Kumar Jha, Pallavi Jain, Ramesh Chandra
Software Mentions: 1
Published: almost 4 years ago

Ecosyste.ms: Papers

Projects: pypi: CABS

Papers Mentioning CABS 28