Ecosyste.ms: Papers

10.1371/journal.pone.0188955

Gbm.auto: A software tool to simplify spatial modelling and Marine Protected Area planning
Cited by: 19
Author(s): Simon Dedman, Rick Officer, Maurice Clarke, David G. Reid, Deirdre Brophy
Software Mentions: 15
Published: almost 7 years ago

10.3897/BDJ.9.e71378

Molecular Acquisition, Cleaning and Evaluation in R (MACER) - A tool to assemble molecular marker datasets from BOLD and GenBank
Cited by: 2
Author(s): Reginald H.F. Young, Rekkab Gill, Daniel Gillis, Robert Hanner
Software Mentions: 11
Published: about 3 years ago

10.2196/25000

Mortality Prediction of Patients With Cardiovascular Disease Using Medical Claims Data Under Artificial Intelligence Architectures: Validation Study
Cited by: 2
Author(s): Linh Tran, Lianhua Chi, Alessio Bonti, Mohamed Abdelrazek, Yi‐Ping Phoebe Chen
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0195221

Delineation and mapping of coastal shark habitat within a shallow lagoonal estuary
Cited by: 10
Author(s): Charles W. Bangley, Lee M. Paramore, Simon Dedman, Roger A. Rulifson
Software Mentions: 5
Published: over 6 years ago

10.1107/S2059798321001765

Protein identification from electron cryomicroscopy maps by automated model building and side-chain matching
Cited by: 7
Author(s): Thomas C. Terwilliger, Oleg V. Sobolev, Pavel V. Afonine, Paul D. Adams, Chin-Ming Ho, Xiaorun Li, Z. Hong Zhou
Software Mentions: 4
Published: over 3 years ago

10.1128/mBio.01280-18

Evolution of the U.S. Biological Select Agent Rathayibacter toxicus
Cited by: 8
Author(s): Edward W. Davis, Javier F. Tabima, Alexandra J. Weisberg, Lucas Dantas Lopes, Michele S. Wiseman, Michael S. Wiseman, Tal Pupko, Michael S. Belcher, A. Sechler, Matt A. Tancos, Brenda K. Schroeder, Timothy Murray, Douglas G. Luster, William L. Schneider, Elizabeth E. Rogers, Fernando Dini Andreote, Niklaus J. Grünwald, M. L. Putnam, Jeff H. Chang
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2164-14-494

Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE
Cited by: 6
Author(s): Quang Trinh, Fei-Yang Arthur Jen, Ziru Zhou, Kar Ming Chu, Marc D. Perry, Ellen Kephart, Sergio Contrino, Peter Ruzanov, Lincoln Stein
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0218300

The Dps4 from Nostoc punctiforme ATCC 29133 is a member of His-type FOC containing Dps protein class that can be broadly found among cyanobacteria
Cited by: 8
Author(s): Christoph Howe, Vamsi K. Moparthi, Felix M. Ho, Karina Persson, Karin Stensjö
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.ppat.1009069

Genomic analysis reveals an exogenous viral symbiont with dual functionality in parasitoid wasps and their hosts
Cited by: 10
Author(s): Kelsey A. Coffman, Gaelen R. Burke
Software Mentions: 2
Published: almost 4 years ago

10.1002/jbm4.10195

Body Weight and Body Mass Index Influence Bone Mineral Density in Late Adolescence in a Two‐Year Follow‐Up Study. The Tromsø Study: Fit Futures
Cited by: 2
Author(s): Ole Andreas Nilsen, Luai A. Ahmed, Anne Winther, Tore Christoffersen, Gyrd Thrane, Elin Kristin Evensen, Anne‐Sofie Furberg, Guri Grimnes, Elaine Dennison, Nina Emaus
Software Mentions: 2
Published: over 5 years ago

10.1038/s41597-020-00680-2

A naturalistic neuroimaging database for understanding the brain using ecological stimuli
Cited by: 47
Author(s): Sarah Aliko, Jiawen Huang, Florin Gheorghiu, Stefanie Meliß, Jeremy I. Skipper
Software Mentions: 2
Published: about 4 years ago

10.1186/s12913-019-4322-8

Exploring Aboriginal aged care residents’ cultural and spiritual needs in South Australia
Cited by: 23
Author(s): Nina Sivertsen, Ann Harrington, Mohammad Hamiduzzaman
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-42341-4

Biological ingredient complement chemical ingredient in the assessment of the quality of TCM preparations
Cited by: 12
Author(s): Hong Bai, Xianhong Li, Hongjun Li, Jialiang Yang, Kang Ning
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.27131

Model-based local density sharpening of cryo-EM maps
Cited by: 187
Author(s): Arjen J. Jakobi, Matthias Wilmanns, Carsten Sachse
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.11627

Loss of the transcription factor Meis1 prevents sympathetic neurons target-field innervation and increases susceptibility to sudden cardiac death
Cited by: 22
Author(s): Fabrice Bouilloux, Jérôme Thireau, Stéphanie Venteo, Charlotte Farah, Sarah Arangurem Karam, Yves Dauvilliers, Jean Valmier, Neal G. Copeland, Nancy A. Jenkins, Sylvain Richard, Frédéric Marmigère
Software Mentions: 2
Published: almost 9 years ago

10.1002/brb3.922

Transcranial DC stimulation modifies functional connectivity of large-scale brain networks in abstinent methamphetamine users
Cited by: 56
Author(s): Alireza Shahbabaie, Mitra Ebrahimpoor, Ali Hariri, Michael A. Nitsche, Javad Hatami, Emad Fatemizadeh, Mohammad Ali Oghabian, Hamed Ekhtiari
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2164-12-108

Characterization of statistical features for plant microRNA prediction
Cited by: 61
Author(s): Vivek Thakur, Samart Wanchana, Mercedes Xu, Richard Bruskiewich, W. Paul Quick, Axel Mosig, Xin‐Guang Zhu
Software Mentions: 2
Published: almost 14 years ago

10.1523/ENEURO.0099-20.2020

Arousal-Biased Competition Explains Reduced Distraction by Reward Cues under Threat
Cited by: 13
Author(s): Andy Kim, Brian A. Anderson
Software Mentions: 1
Published: over 4 years ago

10.1186/s12874-021-01235-8

Interrupted time series analysis using autoregressive integrated moving average (ARIMA) models: a guide for evaluating large-scale health interventions
Cited by: 197
Author(s): Andrea L Schaffer, Timothy Dobbins, Sallie‐Anne Pearson
Software Mentions: 1
Published: over 3 years ago

10.1007/s11538-021-00932-1

A Comparison of the “Reduced Losses” and “Increased Production” Models for Mussel Bed Dynamics
Cited by: 2
Author(s): Jonathan A. Sherratt, Quan‐Xing Liu, Johan van de Koppel
Software Mentions: 1
Published: about 3 years ago

10.3390/molecules25215146

Influence of Pear Variety and Drying Methods on the Quality of Dried Fruit
Cited by: 5
Author(s): Agata Marzec, Hanna Kowalska, Jolanta Kowalska, Ewa Domian, A. Lenart
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0223625

A psychoacoustic application for the adjustment of electrical hearing thresholds in cochlear implant patients
Cited by: 10
Author(s): J Plesch, Benjamin Philipp Ernst, Sebastian Strieth, Tobias Rader
Software Mentions: 1
Published: about 5 years ago

10.1016/j.dib.2018.05.050

In vitro studies data on anticancer activity of Caesalpinia sappan L. heartwood and leaf extracts on MCF7 and A549 cell lines
Cited by: 24
Author(s): Arunkumar Naik Bukke, Fathima Nazneen Hadi, K. Suresh Babu, Preethi Shankar
Software Mentions: 1
Published: over 6 years ago

10.3389/fnhum.2017.00232

Subjectivity of the Anomalous Sense of Self Is Represented in Gray Matter Volume in the Brain
Cited by: 5
Author(s): Noriaki Kanayama, Tomohisa Asai, Takashi Nakao, Kai Makita, Ryutaro Kozuma, Takuto Uyama, Toshiyuki Yamane, Hideki Kadota, Shigeto Yamawaki
Software Mentions: 1
Published: over 7 years ago

10.1136/injuryprev-2015-041814

All Wales Injury Surveillance System revised: development of a population-based system to evaluate single-level and multilevel interventions
Cited by: 15
Author(s): Ronan A Lyons, Samantha Turner, Jane Lyons, Angharad Walters, Helen Snooks, Judith Greenacre, Ciarán Humphreys, Sarah J. Jones
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-16420-3

Application of cardiovascular virtual endoscopy: a pilot study on roaming path planning for diagnosis of congenital heart diseases in children
Cited by: 2
Author(s): Liping Yao, Ju Mei, Fang Ding, Li Zhang, Huiming Li, Ming Ding, Xin Yang, Xiaoming Li, Sun Kim
Software Mentions: 1
Published: almost 7 years ago

10.3390/s19030522

Investigating EEG Patterns for Dual-Stimuli Induced Human Fear Emotional State
Cited by: 26
Author(s): Naveen Masood, Humera Farooq
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00066-015-0890-7

Comparison of CT number calibration techniques for CBCT-based dose calculation
Cited by: 61
Author(s): A. Dunlop, D. McQuaid, Simeon Nill, Julia Murray, Gavin Poludniowski, Vibeke Hansen, Shreerang A. Bhide, Christopher M. Nutting, Kevin Harrington, Kate Newbold, Uwe Oelfke
Software Mentions: 1
Published: about 9 years ago

10.2196/18281

Potential Early Identification of a Large Campylobacter Outbreak Using Alternative Surveillance Data Sources: Autoregressive Modelling and Spatiotemporal Clustering
Cited by: 5
Author(s): Mehnaz Adnan, Xiaoying Gao, Xiaohan Bai, E. Claire Newbern, Jill Sherwood, Nicholas F. Jones, Michael G Baker, Tim Wood, Wei Gao
Software Mentions: 1
Published: about 4 years ago

10.1007/s00285-015-0869-0

Modelling the dynamics of traits involved in fighting-predators–prey system
Cited by: 12
Author(s): Bob W. Kooi
Software Mentions: 1
Published: over 9 years ago