pypi: intersect | Projects | Ecosyste.ms: Papers

10.1186/s13059-018-1484-3

CTCF maintains regulatory homeostasis of cancer pathways
Cited by: 39
Author(s): Sarah J. Aitken, Ximena Ibarra-Soria, Elissavet Kentepozidou, Paul Flicek, Christine Feig, John C. Marioni, Duncan T. Odom
Software Mentions: 14
Published: over 6 years ago

10.7554/eLife.69431

Inflammation drives alternative first exon usage to regulate immune genes including a novel iron-regulated isoform of Aim2
Cited by: 18
Author(s): Elektra Kantzari Robinson, Pratibha Jagannatha, Sergio Covarrubias, Matthew Cattle, Valeriya Smaliy, Rojin Safavi, Barbara Shapleigh, Robin Abu-Shumays, Miten Jain, Suzanne M. Cloonan, Mark Akeson, Angela N. Brooks
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pbio.2004830

Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species
Cited by: 73
Author(s): Reuben W. Nowell, Pedro Almeida, Christopher G. Wilson, Thomas P. Smith, Diego Fontaneto, Alastair Crisp, Gos Micklem, Alan Tunnacliffe, Chiara Boschetti, Timothy G. Barraclough
Software Mentions: 8
Published: over 6 years ago

10.7554/eLife.63194

Evolutionary dynamics of transposable elements in bdelloid rotifers
Cited by: 21
Author(s): Reuben W. Nowell, Christopher G. Wilson, Pedro Almeida, Philipp H. Schiffer, Diego Fontaneto, Lutz Becks, Fernando Rodríguez, Irina R. Arkhipova, Timothy G. Barraclough
Software Mentions: 7
Published: almost 4 years ago

10.3389/fgene.2019.00309

Targeted, High-Resolution RNA Sequencing of Non-coding Genomic Regions Associated With Neuropsychiatric Functions
Cited by: 26
Author(s): Simon A. Hardwick, Samuel D. Bassett, Dominik C. Kaczorowski, James Blackburn, Kirston Barton, Nenad Bartoniček, Shaun Carswell, Hagen Tilgner, Clement T. Loy, Glenda M. Halliday, Tim R. Mercer, Martin A. Smith, John S. Mattick
Software Mentions: 7
Published: over 5 years ago

10.1038/s41422-019-0168-1

Pioneering function of Isl1 in the epigenetic control of cardiomyocyte cell fate
Cited by: 64
Author(s): Rui Gao, Xingqun Liang, Sirisha Cheedipudi, Julio Cordero, Xiyi Jiang, Qingquan Zhang, Luca Caputo, Stefan Günther, Carsten Kuenne, Yongcheng Ren, Shoumo Bhattacharya, Xuejun Yuan, Guillermo Barreto, Yihan Chen, Thomas Braun, Sylvia M. Evans, Yunfu Sun, Gergana Dobreva
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-66377-z

Human ZKSCAN3 and Drosophila M1BP are functionally homologous transcription factors in autophagy regulation
Cited by: 10
Author(s): Marine Barthez, Mathilde Poplineau, Marwa Elrefaey, Nathalie Caruso, Yacine Graba, Andrew J. Saurin
Software Mentions: 5
Published: over 4 years ago

10.1186/s13073-020-00749-y

Epigenetic deregulation of lamina-associated domains in Hutchinson-Gilford progeria syndrome
Cited by: 36
Author(s): Florian Köhler, Felix Bormann, Günter Raddatz, Julian Gutekunst, Nick Gilbert, Tanja Musch, Anke S. Lonsdorf, Sylvia Erhardt, Frank Lyko, Manuel Rodríguez-Paredes
Software Mentions: 5
Published: over 4 years ago

10.1186/s12915-021-00963-z

Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly
Cited by: 64
Author(s): Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A. James, J. J. Emerson
Software Mentions: 4
Published: almost 4 years ago

10.1016/j.molcel.2019.03.010

A Secreted RNA Binding Protein Forms RNA-Stabilizing Granules in the Honeybee Royal Jelly
Cited by: 35
Author(s): Eyal Maori, Isabela Cunha Navarro, Humberto Boncristiani, David J. Seilly, Konrad L. M. Rudolph, Alexandra Sapetschnig, Chi-Chuan Lin, John E. Ladbury, Jay D. Evans, Jonathan L. Heeney, Eric A. Miska
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-018-1392-6

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions
Cited by: 99
Author(s): Paul Bailey, Christian Schudoma, William J. Jackson, Erin Baggs, Gulay Dagdas, Wilfried Haerty, Matthew J. Moscou, Ksenia V. Krasileva
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13059-019-1757-5

Multilayered control of exon acquisition permits the emergence of novel forms of regulatory control
Cited by: 14
Author(s): Nesli Avgan, Juli I. Wang, Javier Fernández-Chamorro, Robert J. Weatheritt
Software Mentions: 4
Published: over 5 years ago

10.1093/gbe/evab059

Genetic Drift Dominates Genome-Wide Regulatory Evolution Following an Ancient Whole-Genome Duplication in Atlantic Salmon
Cited by: 1
Author(s): Jukka‐Pekka Verta, Henry J Barton, Victoria L. Pritchard, Craig R. Primmer
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.53459

The histone modification reader ZCWPW1 links histone methylation to PRDM9-induced double-strand break repair
Cited by: 28
Author(s): Tao Huang, Shenli Yuan, Lei Gao, Mengjing Li, Xiaochen Yu, Jianhong Zhan, Yingying Yin, Chao Liu, Chuanxin Zhang, Gang Lü, Wei Li, Jiang Liu, Zi‐Jiang Chen, Hongbin Liu
Software Mentions: 4
Published: over 4 years ago

10.3389/fgene.2019.00312

Age-Dependent Changes in Transcription Factor FOXO Targeting in Female Drosophila
Cited by: 28
Author(s): Allison Birnbaum, Xiaofen Wu, Marc Tatar, Nan Liu, Hua Bai
Software Mentions: 3
Published: over 5 years ago

10.1080/20002297.2021.1887680

Comparisons of oral, intestinal, and pancreatic bacterial microbiomes in patients with pancreatic cancer and other gastrointestinal diseases
Cited by: 15
Author(s): Mei Chung, Naisi Zhao, Richard Meier, Devin C. Koestler, Guojun Wu, Erika del Castillo, Bruce J. Paster, Kevin P. Charpentier, Jacques Izard, Karl T. Kelsey, Dominique S. Michaud
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12864-016-2516-6

CTCF-mediated chromatin loops enclose inducible gene regulatory domains
Cited by: 58
Author(s): Martin Oti, Jonas Falck, Martijn A. Huynen, Huiqing Zhou
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.ppat.1009780

Transovarial transmission of a core virome in the Chagas disease vector Rhodnius prolixus
Cited by: 6
Author(s): Tarcísio Fontenele de Brito, Vitor Lima Coelho, Maira Arruda Cardoso, Ingrid Alexandre de Abreu Brito, Mateus Berni, Fides Zenk, Nicola Iovino, Andrea Pane
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pgen.1008223

Local adaptation drives the diversification of effectors in the fungal wheat pathogen Parastagonospora nodorum in the United States
Cited by: 46
Author(s): Jonathan Richards, Eva H. Stukenbrock, Jessica Carpenter, Zhaohui Liu, Christina Cowger, Justin D. Faris, Timothy L. Friesen
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2018.01784

Whole-Genome Resequencing and Pan-Transcriptome Reconstruction Highlight the Impact of Genomic Structural Variation on Secondary Metabolite Gene Clusters in the Grapevine Esca Pathogen Phaeoacremonium minimum
Cited by: 24
Author(s): Mélanie Massonnet, Abraham Morales‐Cruz, Andrea Minio, Rosa Figueroa‐Balderas, Daniel P. Lawrence, Renaud Travadon, Philippe E. Rolshausen, Kendra Baumgartner, Dario Cantu
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.63266

Dissecting the DNA binding landscape and gene regulatory network of p63 and p53
Cited by: 23
Author(s): Konstantin Riege, Helene Kretzmer, Arne Sahm, Simon S. McDade, Steve Hoffmann, Martin Fischer
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0235987

Integrative analysis of miRNA and mRNA sequencing data reveals potential regulatory mechanisms of ACE2 and TMPRSS2
Cited by: 71
Author(s): Stepan Nersisyan, M. Yu. Shkurnikov, Andrey Turchinovich, E N Knyazev, Alexander G. Tonevitsky
Software Mentions: 2
Published: over 4 years ago

10.1186/s13059-021-02489-7

Chromatin accessibility and regulatory vocabulary across indicine cattle tissues
Cited by: 17
Author(s): Pâmela Almeida Alexandre, Marina Naval-Sánchez, Moira Menzies, Loan Nguyen, Laércio R. Porto-Neto, M. R. S. Fortes, Antônio Reverter
Software Mentions: 2
Published: about 3 years ago

10.3390/genes11030276

Identification of Structural Variation in Chimpanzees Using Optical Mapping and Nanopore Sequencing
Cited by: 14
Author(s): Daniela C. Soto, Colin J. Shew, Mira Mastoras, Joshua M. Schmidt, Ruta Sahasrabudhe, Gulhan Kaya, Aida M. Andrés, Megan Y. Dennis
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-37857-0

Heterodera glycines utilizes promiscuous spliced leaders and demonstrates a unique preference for a species-specific spliced leader over C. elegans SL1
Cited by: 3
Author(s): Stacey N. Barnes, Rick E. Masonbrink, Thomas R. Maier, Arun S. Seetharam, Anoop Sindhu, Andrew J. Severin, Thomas J. Baum
Software Mentions: 2
Published: almost 6 years ago

10.1534/g3.118.200580

Tandem Duplicate Genes in Maize Are Abundant and Date to Two Distinct Periods of Time
Cited by: 12
Author(s): Thomas J. Y. Kono, Alex B. Brohammer, Suzanne E. McGaugh, Candice N. Hirsch
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0162841

A Genome-Wide Survey of the Microsatellite Content of the Globe Artichoke Genome and the Development of a Web-Based Database
Cited by: 29
Author(s): Ezio Portis, Flavio Portis, Luísa Valente, Andrea Moglia, Lorenzo Barchi, Sergio Lanteri, Alberto Acquadro
Software Mentions: 1
Published: about 8 years ago

Ecosyste.ms: Papers

Projects: pypi: intersect

Papers Mentioning intersect 27