Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-018-1484-3
https://doi.org/10.1186/s13059-018-1484-3
Cited by: 39
Author(s): Sarah J. Aitken, Ximena Ibarra-Soria, Elissavet Kentepozidou, Paul Flicek, Christine Feig, John C. Marioni, Duncan T. Odom
Published: almost 6 years ago
Software Mentions 14
bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSetPapers that mentioned: 1,962
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataPapers that mentioned: 217
bioconductor: GreyListChIP
Grey Lists -- Mask Artefact Regions Based on ChIP InputsPapers that mentioned: 2
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browserPapers that mentioned: 107
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)Papers that mentioned: 989
pypi: mcast
Python Multicast file transfer CLI tool - also comes with nc/netcat implementationPapers that mentioned: 1