Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Brian2

https://packages.ecosyste.ms/registries/pypi.org/packages/Brian2

A clock-driven simulator for spiking neural networks
45 versions
Latest release: over 1 year ago
9 dependent packages
4,622 downloads last month

Papers Mentioning Brian2 27

10.1186/s12868-017-0372-1
26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3
Cited by: 5
Author(s): Adam J. H. Newton, Alexandra H Seidenstein, Robert A. McDougal, Alberto Pérez-Cervera, Gemma Huguet, Tere M. Seara, Caroline Haimerl, David Angulo-García, Alessandro Torcini, Rosa Cossart, Arnaud Malvache, K. Skiker, Mounir Maouene, Gianmarco Ragognetti, Letizia Lorusso, Andrea Viggiano, Angelo Marcelli, Rosa Senatore, Antonio Parziale, Sebastiano Stramaglia, M. Pellicoro, Lucia Angelini, Enrico Amico, Hannelore Aerts, Jesús M. Cortés, Steven Laureys, Daniele Marinazzo, Iege Bassez, Luca Faes, Hannes Almgren, Adeel Razi, Frederik Van de Steen, Ruth M. Krebs, Hannelore Aerts, Lida Kanari, Paweł Dłotko, Martina Scolamiero, Ran Levi, Julian C. Shillcock, Christiaan Pj de Kock, Katharina Heß, Henry Markram, Cheng Ly, Gary Marsat, Tom Gillespie, Malin Sandström, Mathew Abrams, Jeffrey S. Grethe, Maryann E. Martone, Robin De Gernier, Sergio Solinas, Christian Rössert, Marc Haelterman, Serge Massar, Valentina Pasquale, Vito Paolo Pastore, Sergio Martinoia, Paolo Massobrio, Cristiano Capone, Núria Tort-Colet, María V. Sánchez-Vives, Maurizio Mattia, Ali Almasi, Shaun L. Cloherty, David B. Grayden, Yan T. Wong, M. Ibbotson, Hamish Meffin, Luke Y. Prince, Krasimira Tsaneva-Atanasova, Jack R. Mellor, Annalisa Mazzoni, Manuela Rosa, J. Carpaneto, Luigi Romito, Alberto Priori, Silvestro Micera, Rosanna Migliore, Carmen Alina Lupaşcu, Francesco Franchina, Luca Bologna, Armando Romani, Sára Sáray, Werner Van Geit, Szabolcs Káli, Alex Thomson, Audrey Mercer, Sigrun Lange, Joanne Falck, Eilif Müller, Felix Schürmann, Dmitry Todorov, Robert Capps, William Barnett, Yaroslav I. Molkov, Federico Devalle, Diego Pazó, Ernest Montbrió, Gabriela Mochol, Habiba Azab, Benjamin Y. Hayden, Rubén Moreno‐Bote, Pragathi Priyadharsini Balasubramani, Srinivasa Chakravarthy, Vignayanandam Ravindernath Muddapu, Medorian D. Gheorghiu, Bartul Mimica, Jonathan Withlock, Raul C. Mureșan, Jennifer L. Zick, Kelsey Schultz, Rachael K. Blackman, Matthew V. Chafee, Theoden I. Netoff, Nicholas Roberts, Vivek Nagaraj, Andrew Lamperski, Logan L. Grado, Matthew D. Johnson, David Darrow, Davide Lonardoni, Hayder Amin, Stefano Di Marco, Alessandro Maccione, Luca Berdondini, Thierry Nieus, Marcel Stimberg, Dan F. M. Goodman, Thomas Nowotny, Veronika Koren, Valentin Dragoi, Klaus Obermayer, Samy Castro, Mariano Fernández, Wael El-Deredy, Ke Xu, Jean P. Maidana, Patricio Orio, Wei‐Liang Chen, Iain Hepburn, Francesco Casalegno, Adrien Devresse, A. G. Ovcharenko, Fernando Pereira, Fabien Delalondre, Erik De Schutter, Peter Bratby, Andrew R. Gallimore, Guido Klingbeil, Criseida Zamora, Yunliang Zang, Patrick Crotty, Eric Palmerduca, Alberto Antonietti, Claudia Casellato, Csaba Erö, Egidio D’Angelo, Marc‐Oliver Gewaltig, Alessandra Pedrocchi, Ilja Bytschok, Dominik Dold, Johannes Schemmel, K. Meier, Mihai A. Petrovici, Hui-An Shen, Simone Carlo Surace, Jean-Pascal Pfister, Baptiste Lefebvre, Olivier Marre, Pierre Yger, Athanasia Papoutsi, Jiyoung Park, Ryan T. Ash, Stelios M. Smirnakis, Panayiota Poirazi, Richard A. Felix, Alexander G. Dimitrov, Christine V. Portfors, Silvia Daun, Tibor Tóth, Joanna Jędrzejewska‐Szmek, Nadine Kabbani, Kim T. Blackwel, Bahar Moezzi, Natalie Schaworonkow, Lukas Plogmacher, Mitchell R. Goldsworthy, Brenton Hordacre, Mark D. McDonnell, Nicolangelo Iannella, Michael C. Ridding, Jochen Triesch, Reinoud Maex, Karen Safaryan, Volker Steuber, Rongxiang Tang, Yi‐Yuan Tang, Darya V. Verveyko, Alexey Brazhe, Andrey Yu. Verisokin, Dmitry E. Postnov, Cengiz Günay, Gabriella Panuccio, Michèle Giugliano, Astrid A. Prinz, Pablo Varona, M. I. Rabinovich, Jack E. Denham, Thomas Ranner, Netta Cohen, Maria Reva, Nelson Rebola, Tekla Kirizs, Zoltán Nusser, David A. DiGregorio, Eirini Mavritsaki, Panos Rentzelas, Nikul H. Ukani, Adam Tomkins, Chung-Heng Yeh, Wesley Bruning, Allison L. Fenichel, Yiyin Zhou, Yu-Chi Huang, Dorian Florescu, Carlos L. Ortiz, Paul Richmond, Chung-Chuan Lo, Daniel Coca, Ann‐Shyn Chiang, Aurel A. Lazar, Jennifer Creaser, Congping Lin, Peter Ashwin, Jon T. Brown, Thomas Ridler, Daniel Levenstein, Brendon O. Watson, György Buzsáki, John Rinzel, Rodica Curtu, Anh Trung Nguyen, Sahand Assadzadeh, P. A. Robinson, Paula Sanz‐Leon, Caroline Garcia Forlim, Lírio Onofre Baptista de Almeida, Reynaldo D. Pinto, Francisco B. Rodríguez, Ángel Lareo, Aarón Montero, Thiago Mosqueiro, Ramón Huerta, Vinicio Changoluisa, Vinícius Lima Cordeiro, Cesar Ceballos, Nilton L. Kamiji, Antonio Roque, William W. Lytton, Andrew T. Knox, Joshua J. C. Rosenthal, Svitlana Popovych, Liqing Liu, Bin A. Wang, Christian Grefkes, Gereon R. Fink, Nils Rosjat, Abraham Perez-Trujillo, Andrés Espinal, Marco Aurelio Sotelo-Figueroa, Iván Cruz-Aceves, Horacio Rostro-González, Martin Zapotocky, Martina Hoskovcová, J Kopecká, Olga Ulmanová, Evžen Růžička, Matthias Gärtner, Sevil Duvarci, Jochen Roeper, Gerd‐Helge Schneider, Štefan Albert, Katharina Schmack, Michiel W. H. Remme, Susanne Schreiber, Michele Migliore, Stefano Maximiliano Antonel, Jean-Denis Courcol, Sami Utku Çelikok, Eva M. Navarro-López, Neslihan Serap Şengör, Rahmi Elibol, Mustafa Y. Özdemir, Tianyi Li, Angelo Arleo, Denis Sheynikhovich, Akihiro Nakamura, Masanori Shimono, Youngjo Song, Sol Park, Ilhwan Choi, Jaeseung Jeong, Hee‐Sup Shin, Sadra Sadeh, Padraig Gleeson, R. Angus Silver, Alexandra P. Chatzikalymniou, Frances K. Skinner, Francisco B. Rodríguez, Roberto C. Sotero, Loreen Hertäg, Owen Mackwood, Henning Sprekeler, Steffen Puhlmann, Simon Weber, David Higgins, Laura Naumann, Ramakrisnan Iyer, Ştefan Mihalaş, Valentina Ticcinelli, Tomislav Stankovski, Peter V. E. McClintock, Aneta Stefanovska, Predrag Janjić, Dimitar Solev, Gerald Seifert, Ljupčo Kocarev, Christian Steinhäuser, Mehrdad Salmasi, Stefan Glasauer, Martin B. Stemmler, Danke Zhang, Chi Zhang, Armen Stepanyants, Julia Goncharenko, Lieke Kros, Neil Davey, Chris I. De Zeeuw, Freek E. Hoebeek, Ankur Sinha, Roderick Adams, Michael Schmuker, Maria Psarrou, Maria J. Schilstra, Benjamin Torben‐Nielsen, Christoph Metzner, Achim Schweikard, Tuomo Mäki‐Marttunen, Bartosz Zurowski, Daniele Marinazzo, Luca Faes, Sebastiano Stramaglia, H Jordan, Simon M. Stringer, Elżbieta Gajewska-Dendek, Piotr Suffczyński, Nicoladie D. Tam, George Zouridakis, Luca Pollonini, Mojtaba Madadi Asl, Alireza Valizadeh, Peter A. Tass, Andreas Nold, Wei Fan, Sara Konrad, Heiko Endle, Johannes Vogt, Tatjana Tchumatchenko, Juliane Herpich, Christian Tetzlaff, Jannik Luboeinski, Timo Nachstedt, Manuel Ciba, Andreas Bahmer, Christiane Thielemann, Eric S. Kuebler, Joseph S. Tauskela, Jean-Philippe Thivierge, Rembrandt Bakker, María García‐Amado, Marian Evangelio, Francisco Clascá, Paul Tiesinga, Christopher L. Buckley, Taro Toyoizumi, Alexis Dubreuil, Rémi Monasson, Alessandro Treves, Davide Spalla, Sophie Rosay, Florence I. Kleberg, Willy Wong, Bruno de Oliveira Floriano, Toshihiko Matsuo, Tetsuya Uchida, D. Dibenedetto, Kâmil Uludağ, Abdorreza Goodarzinick, Maximilian Schmidt, Claus C. Hilgetag, Markus Diesmann, Sacha J. van Albada, Michael Fauth, Mark C. W. van Rossum, Manuel Reyes-Sánchez, Rodrigo Amaducci, Carlos Múñiz, Irene Elices, David Arroyo, Rafael Levi, Ben Cohen, Carson C. Chow, Shashaank Vattikuti, Elena Bertolotti, Raffaella Burioni, Matteo di Volo, A. Vezzani, Bayar Menzat, Tim P. Vogels, Nobuhiko Wagatsuma, Susmita Saha, Reena Kapoor, Robert R. Kerr, John Wagner, Luis C. G. del Molino, Guangyu Robert Yang, Jorge F. Mejías, Xiaojing Wang, Hanbing Song, Joseph W. Goodliffe, Jennifer I. Luebke, Christina M. Weaver, John Thomas, Nishant Sinha, Nikhita Shaju, Tomasz Maszczyk, Jing Jin, Sydney S. Cash, Justin Dauwels, M. Brandon Westover, Maryam Karimian, Michelle Moerel, Peter De Weerd, Thomas Burwick, Ronald L. Westra, Romesh Abeysuriya, Jonathan Hadida, Stamatios N. Sotiropoulos, Saâd Jbabdi, Mark W. Woolrich, Chama Bensmail, Borys Wróbel, Xiaolong Zhou, Zilong Ji, Xiao Liu, Xin Yan, Si Wu, Wang Xiao, Mingsha Zhang, Netanel Ofer, Orit Shefi, Gur Yaari, Ted Carnevale, Amit Majumdar, Subhashini Sivagnanam, Kenneth Yoshimoto, Elena Y. Smirnova, Dmitry V. Amakhin, Sergey L. Malkin, Aleksey V. Zaitsev, Anton V. Chizhov, Margarita Zaleshina, Alexander Zaleshin, Victor J. Barranca, George Zhu, Quinton M. Skilling, Daniel Maruyama, Nicolette Ognjanovski, Sara J. Aton, Michal Zochowski, Jiaxing Wu, Sara J. Aton, Scott Rich, Victoria Booth, Maral Budak, Salvador Dura‐Bernal, Samuel A. Neymotin, Benjamin A. Suter, Gordon M. Shepherd, Melvin Felton, Alfred B. Yu, David L. Boothe, Kelvin S. Oie, Piotr J. Franaszczuk, Sergey A. Shuvaev, Batuhan Başerdem, Anthony M. Zador, Alexei A. Koulakov, Víctor J. López‐Madrona, Ernesto Pereda, Claudio R. Mirasso, Santiago Canals, Stefano Masoli, Udaya Bhaskar Rongala, Anton Spanne, Henrik Jörntell, Calogero Maria Oddo, A. Vartanov, Anastasia Neklyudova, S. Kozlovskiy, A. Kiselnikov, J. Marakshina, Maria Teleńczuk, Bartosz Teleńczuk, Alain Destexhe, Paula T. Kuokkanen, Anna Kraemer, Thomas McColgan, Catherine Carr, Richard Kempter
Software Mentions: 12
Published: over 7 years ago
10.7554/eLife.47314
Brian 2, an intuitive and efficient neural simulator
Cited by: 372
Author(s): Marcel Stimberg, Romain Brette, Dan F. M. Goodman
Software Mentions: 10
Published: over 5 years ago
10.7554/eLife.44494
NetPyNE, a tool for data-driven multiscale modeling of brain circuits
Cited by: 101
Author(s): Salvador Dura‐Bernal, Benjamin A. Suter, Padraig Gleeson, Matteo Carandini, Adrián Quintana, Facundo Rodriguez, David J. Kedziora, George L. Chadderdon, Cliff C. Kerr, Samuel A. Neymotin, Robert A. McDougal, Michael L. Hines, Gordon M. Shepherd, William W. Lytton
Software Mentions: 10
Published: over 5 years ago
10.3389/fninf.2016.00008
PyRhO: A Multiscale Optogenetics Simulation Platform
Cited by: 20
Author(s): Benjamin D. Evans, Sarah Jarvis, Simon R. Schultz, Konstantin Nikolić
Software Mentions: 9
Published: over 8 years ago
10.3389/fninf.2021.659005
PyGeNN: A Python Library for GPU-Enhanced Neural Networks
Cited by: 23
Author(s): James C. Knight, A. B. Комиссаров, Thomas Nowotny
Software Mentions: 8
Published: over 3 years ago
10.1371/journal.pcbi.1006741
Spatial synchronization codes from coupled rate-phase neurons
Cited by: 19
Author(s): Joseph D. Monaco, Rose M. De Guzman, Hugh T. Blair, Kechen Zhang
Software Mentions: 7
Published: almost 6 years ago
10.1016/j.celrep.2019.03.102
The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the Neocortex
Cited by: 14
Author(s): Yann Zerlaut, Stefano Zucca, Stefano Panzeri, Tommaso Fellin
Software Mentions: 6
Published: over 5 years ago
10.3389/fninf.2014.00006
Equation-oriented specification of neural models for simulations
Cited by: 120
Author(s): Marcel Stimberg, Dan F. M. Goodman, Victor Benichoux, Romain Brette
Software Mentions: 4
Published: almost 11 years ago
10.3389/fninf.2021.609147
Event-Based Update of Synapses in Voltage-Based Learning Rules
Cited by: 3
Author(s): Jonas Stapmanns, Jan Hahne, Moritz Helias, Matthias Bolten, Markus Diesmann, David Dahmen
Software Mentions: 3
Published: over 3 years ago
10.3389/fnbot.2020.589532
Robust Trajectory Generation for Robotic Control on the Neuromorphic Research Chip Loihi
Cited by: 7
Author(s): Carlo Michaelis, Andrew B. Lehr, Christian Tetzlaff
Software Mentions: 3
Published: almost 4 years ago
10.1186/1471-2202-15-S1-P176
A NineML-based domain-specific language for computational exploration of connectivity in the cerebellar granular layer
Cited by: 2
Author(s): Ivan Raikov, Shyam Kumar, Benjamin Torben‐Nielsen, Erik De Schutter
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pcbi.1008118
Presynaptic inhibition rapidly stabilises recurrent excitation in the face of plasticity
Cited by: 9
Author(s): Laura Naumann, Henning Sprekeler
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-80132-4
A functional spiking neuronal network for tactile sensing pathway to process edge orientation
Cited by: 14
Author(s): Adel Parvizi-Fard, Mahmood Amiri, Deepesh Kumar, Mark M. Iskarous, Nitish V. Thakor
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pcbi.1005543
Spontaneous cortical activity is transiently poised close to criticality
Cited by: 84
Author(s): Gerald J. Hahn, Adrián Ponce‐Alvarez, Cyril Monier, Giacomo Benvenuti, Arvind Kumar, Frédéric Chavane, Gustavo Deco, Yves Frégnac
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pcbi.1006440
Electrical synapses regulate both subthreshold integration and population activity of principal cells in response to transient inputs within canonical feedforward circuits
Cited by: 10
Author(s): Tuan D. Pham, Julie S. Haas
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pcbi.1005782
A single-cell spiking model for the origin of grid-cell patterns
Cited by: 26
Author(s): Tiziano D’Albis, Richard Kempter
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pcbi.1008016
A circuit model of auditory cortex
Cited by: 21
Author(s): Youngmin Park, Maria N. Geffen
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pcbi.1006974
Weak electric fields promote resonance in neuronal spiking activity: Analytical results from two-compartment cell and network models
Cited by: 17
Author(s): Josef Ladenbauer, Klaus Obermayer
Software Mentions: 1
Published: over 5 years ago
10.3389/fnins.2019.01173
Comparison of Multi-Compartment Cable Models of Human Auditory Nerve Fibers
Cited by: 12
Author(s): Richard Bachmaier, Jörg Encke, Miguel Obando-Leitón, Werner Hemmert, Siwei Bai
Software Mentions: 1
Published: about 5 years ago
10.3389/fnins.2017.00682
Conversion of Continuous-Valued Deep Networks to Efficient Event-Driven Networks for Image Classification
Cited by: 584
Author(s): Bodo Rueckauer, Iulia-Alexandra Lungu, Yuhuang Hu, Michael Pfeiffer, Shih-Chii Liu
Software Mentions: 1
Published: almost 7 years ago
10.1523/ENEURO.0297-20.2021
Short-Term Synaptic Plasticity Makes Neurons Sensitive to the Distribution of Presynaptic Population Firing Rates
Cited by: 11
Author(s): Luiz Tauffer, Arvind Kumar
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-85827-w
A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG
Cited by: 13
Author(s): Karla Burelo, Mohammadali Sharifshazileh, Niklaus Krayenbühl, Georgia Ramantani, Giacomo Indiveri, Johannes Sarnthein
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pcbi.1007198
A case study in the functional consequences of scaling the sizes of realistic cortical models
Cited by: 4
Author(s): Madhura R. Joglekar, Logan Chariker, Robert Shapley, Lai Sang Young
Software Mentions: 1
Published: over 5 years ago
10.7554/eLife.53016
Pre-stimulus phase and amplitude regulation of phase-locked responses are maximized in the critical state
Cited by: 16
Author(s): Arthur-Ervin Avramiea, Richard Hardstone, Jan Matthis Lueckmann, Jan Bím, Huibert D. Mansvelder, Klaus Linkenkaer‐Hansen
Software Mentions: 1
Published: over 4 years ago
10.7554/eLife.53664
A circuit mechanism for decision-making biases and NMDA receptor hypofunction
Cited by: 14
Author(s): Sean E Cavanagh, Norman H Lam, John D. Murray, Laurence T. Hunt, Steven W. Kennerley
Software Mentions: 1
Published: about 4 years ago
10.1186/1471-2202-16-S1-P291
More flexibility for code generation with GeNN v2.1
Cited by: 0
Author(s): Thomas Nowotny, James P. Turner, Esin Yavuz
Software Mentions: 1
Published: almost 9 years ago
10.3389/fncir.2020.614615
Neural Interactions in Developing Rhythmogenic Spinal Networks: Insights From Computational Modeling
Cited by: 4
Author(s): Natalia A. Shevtsova, Ngoc T Ha, Ilya A. Rybak, Kimberly J. Dougherty
Software Mentions: 1
Published: almost 4 years ago