Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: flex

https://packages.ecosyste.ms/registries/pypi.org/packages/flex

Swagger Schema validation.
66 versions
Latest release: over 5 years ago
5 dependent packages
115,131 downloads last month

Papers Mentioning flex 27

10.3389/fpubh.2019.00241
Evaluation of Rapid Library Preparation Protocols for Whole Genome Sequencing Based Outbreak Investigation
Cited by: 28
Author(s): Helena M. B. Seth-Smith, Ferdinando Bonfiglio, Aline Cuénod, Josiane Reist, Adrian Egli, Daniel Wüthrich
Software Mentions: 5
Published: over 5 years ago
10.3390/ijms20030606
Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force Fields
Cited by: 41
Author(s): Maciej Pawel Ciemny, Aleksandra E. Badaczewska-Dawid, Monika Pikuzinska, Andrzej Koliński, Sebastian Kmiecik
Software Mentions: 4
Published: almost 6 years ago
10.15252/embr.201948191
Partially inserted nascent chain unzips the lateral gate of the Sec translocon
Cited by: 36
Author(s): Lukas Kater, Benedikt Frieg, Otto Berninghausen, Holger Gohlke, Roland Beckmann, Alexej Kedrov
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0187471
Path-oriented test cases generation based adaptive genetic algorithm
Cited by: 18
Author(s): Xiaoan Bao, Zijian Xiong, Na Zhang, Junyan Qian, Biao Wu, Wei Zhang
Software Mentions: 3
Published: about 7 years ago
10.1038/s41598-018-37506-6
Mechanism of action of the moonlighting protein EfTu as a Substance P sensor in Bacillus cereus
Cited by: 9
Author(s): Awa Ndiaye, Valérie Borrel, Pierre‐Jean Racine, Thomas Clamens, Ségolène Depayras, Olivier Maillot, Béatrice Schaack, Sylvie Chevalier, Olivier Lesouhaitier, Marc Feuilloley
Software Mentions: 3
Published: almost 6 years ago
10.1155/2014/843248
Adaptive Random Testing with Combinatorial Input Domain
Cited by: 6
Author(s): Rubing Huang, Jinfu Chen, Yilong Lu
Software Mentions: 2
Published: almost 11 years ago
10.1194/jlr.M050633
Macrophage deficiency of Akt2 reduces atherosclerosis in Ldlr null mice
Cited by: 53
Author(s): Vladimir R. Babaev, Katie E. Hebron, Carrie B. Wiese, Cynthia L. Toth, Lei Ding, Youmin Zhang, James M. May, Sergio Fazio, Kasey C. Vickers, MacRae F. Linton
Software Mentions: 2
Published: about 10 years ago
10.3389/fpsyt.2021.660534
Clinical and Cost-Effectiveness of PSYCHOnlineTHERAPY: Study Protocol of a Multicenter Blended Outpatient Psychotherapy Cluster Randomized Controlled Trial for Patients With Depressive and Anxiety Disorders
Cited by: 18
Author(s): Harald Baumeister, Natalie Bauereiß, Anna-Carlotta Zarski, Lina Braun, Claudia Buntrock, Christian Hoherz, Abdul Rahman Idrees, Robin Kraft, Pauline Meyer, Tran Nguyen, Rüdiger Pryss, Manfred Reichert, Theresa Sextl, Maria Steinhoff, Lena Stenzel, Lena Steubl, Yannik Terhorst, Ingrid Titzler, David Daniel Ebert
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0063724
Serum Peptidome Variations in a Healthy Population: Reference to Identify Cancer-Specific Peptides
Cited by: 11
Author(s): Kun He, Xinyu Wen, Ailing Li, Tao Li, Jie Wang, Hongxia Wang, Na Wang
Software Mentions: 2
Published: over 11 years ago
10.1534/g3.116.037390
Human Cell Assays for Synthesis-Dependent Strand Annealing and Crossing over During Double-Strand Break Repair
Cited by: 8
Author(s): Grzegorz Zapotoczny, Jeff Sekelsky
Software Mentions: 2
Published: over 7 years ago
10.1007/s13361-015-1136-8
Large-Scale Mass Spectrometry Imaging Investigation of Consequences of Cortical Spreading Depression in a Transgenic Mouse Model of Migraine
Cited by: 30
Author(s): Ricardo J. Carreira, Reinald Shyti, Benjamin Balluff, Walid M. Abdelmoula, Sandra H. van Heiningen, René J. van Zeijl, Jouke Dijkstra, Michel D. Ferrari, Else A. Tolner, Liam A. McDonnell, Arn M. J. M. van den Maagdenberg
Software Mentions: 2
Published: over 9 years ago
10.1186/1743-422X-10-269
Chikungunya virus capsid protein contains nuclear import and export signals
Cited by: 37
Author(s): Saijo Thomas, Jagdish Rai, Lijo John, Stephan Schaefer, Brigitte M. Pützer, Ottmar Herchenröder
Software Mentions: 2
Published: over 11 years ago
10.1063/1.5144487
A versatile, multi-laser twin-microscope system for light-sheet imaging
Cited by: 9
Author(s): Kevin Keomanee-Dizon, Scott E. Fraser, Thai V. Truong
Software Mentions: 2
Published: over 4 years ago
10.1038/sdata.2017.22
Image-based siRNA screen to identify kinases regulating Weibel-Palade body size control using electroporation
Cited by: 9
Author(s): Robin Ketteler, Jamie Freeman, Francesco Ferraro, Nicole Bata, Daniel F. Cutler, János Kriston-Vizi, Nicola Stevenson
Software Mentions: 2
Published: almost 8 years ago
10.1155/2020/3062821
Invasion of Epithelial Cells Is Correlated with Secretion of Biosurfactant via the Type 3 Secretion System (T3SS) of Shigella flexneri
Cited by: 3
Author(s): Duchel Jeanedvi Kinouani Kinavouidi, Christian Aimé Kayath, Etienne Nguimbi
Software Mentions: 1
Published: over 4 years ago
10.1186/s12879-020-05610-6
Identification and differential expression of serotransferrin and apolipoprotein A-I in the plasma of HIV-1 patients treated with first-line antiretroviral therapy
Cited by: 5
Author(s): Sushanta Kumar Barik, Keshar Kunja Mohanty, Ashok Kumar Mohanty, Preeti Rawat, Gayatri Gopal, Deepa Bisht, Shripad A. Patil, Rananjay Singh, Devesh Sharma, Srikanth Tripathy, Rekha Tandon, T.P. Singh, Srikanta Jena
Software Mentions: 1
Published: about 4 years ago
10.6026/97320630016160
Decoding the vital segments in human ATP-dependent RNA helicase
Cited by: 7
Author(s): Vandana Kamjula, Ananya Kanneganti, Rohan Metla, Kusuma Nidamanuri, Sudarshan Idupulapati, Ashish Runthala
Software Mentions: 1
Published: almost 5 years ago
10.1155/2014/326405
Mass Spectrometric Analysis of Differentially Expressed Proteins in an Endangered Medicinal Herb,<i>Picrorhiza kurroa</i>
Cited by: 6
Author(s): Amit Sud, Rajinder Singh Chauhan, Chanderdeep Tandon
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0139414
Comparative Proteomic Analysis of Aminoglycosides Resistant and Susceptible Mycobacterium tuberculosis Clinical Isolates for Exploring Potential Drug Targets
Cited by: 58
Author(s): Divakar Sharma, Bhavnesh Kumar, Manju Lata, Beenu Joshi, K Venkatesan, Sangeeta Shukla, Deepa Bisht
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0152819
Cupincin: A Unique Protease Purified from Rice (Oryza sativa L.) Bran Is a New Member of the Cupin Superfamily
Cited by: 14
Author(s): Roopesh Sreedhar, Purnima Kaul Tiku
Software Mentions: 1
Published: over 8 years ago
10.3390/cells7090126
Transient Receptor Potential Channel A1 (TRPA1) Regulates Sulfur Mustard-Induced Expression of Heat Shock 70 kDa Protein 6 (HSPA6) In Vitro
Cited by: 9
Author(s): Robin Lüling, Harald John, Thomas Gudermann, Horst Thiermann, Harald Mückter, Tanja Popp, Dirk Steinritz
Software Mentions: 1
Published: over 6 years ago
10.3205/zma001271
Bologna backstage - experiences from behind the scenes of the reforms of the Basel medical curriculum.
Cited by: 1
Author(s): G. Voigt, Michael Wilde
Software Mentions: 1
Published: almost 6 years ago
10.1038/jcbfm.2014.253
Therapeutic Hypothermia Achieves Neuroprotection <i>via</i> a Decrease in Acetylcholine with a Concurrent Increase in Carnitine in the Neonatal Hypoxia-Ischemia
Cited by: 26
Author(s): Toshiki Tamura, Yuki Sugiura, Takayuki Morikawa, Takashi Nakanishi, Yoshiko Nagahata, Tadao Sugioka, Kurara Honda, Akiko Kubo, Takako Hishiki, Tomomi Matsuura, Takao Hoshino, Tsuyoshi Takahashi, Makoto Suematsu, Mayumi Kajimura
Software Mentions: 1
Published: almost 10 years ago
10.1093/jxb/erv377
<i>Xanthomonas campestris</i>cell–cell signalling molecule DSF (diffusible signal factor) elicits innate immunity in plants and is suppressed by the exopolysaccharide xanthan
Cited by: 64
Author(s): Akanksha Kakkar, Narasimha Rao Nizampatnam, Kondreddy Anil, Binod Bihari Pradhan, Subhadeep Chatterjee
Software Mentions: 1
Published: over 9 years ago
10.3390/ijms15034333
Comparative Proteomic Analysis of Differential Responses of Pinus massoniana and Taxus wallichiana var. mairei to Simulated Acid Rain
Cited by: 19
Author(s): Wenjun Hu, Juan Chen, Tingwu Liu, Martín Simón, Wenhua Wang, Juan Chen, Fei-Hua Wu, Xiang Liu, Zhijun Shen, Hai-Lei Zheng
Software Mentions: 1
Published: almost 11 years ago
10.3390/ijms160819326
Identification of Proteins Modulated in the Date Palm Stem Infested with Red Palm Weevil (Rhynchophorus ferrugineus Oliv.) Using Two Dimensional Differential Gel Electrophoresis and Mass Spectrometry
Cited by: 14
Author(s): Khawaja Ghulam Rasool, Muhammad Altaf Khan, Abdulrahman S. Aldawood, Muhammad Tufail, Muḥammad Mukhtār, Makio Takeda
Software Mentions: 1
Published: over 9 years ago
10.1186/s12915-016-0295-9
The pesticidal Cry6Aa toxin from Bacillus thuringiensis is structurally similar to HlyE-family alpha pore-forming toxins
Cited by: 33
Author(s): Alexey Dementiev, Jason Board, Anand Sitaram, T D Hey, M.S. Kelker, Xiaoping Xu, Yan Hu, José Cristian Vidal-Quist, Vimbai M. Chikwana, Samantha Griffin, David McCaskill, Nick X. Wang, Shao-Ching Hung, Michael K. Chan, Marianne M. Lee, Jessica M Hughes, Alice Wegener, Raffi V. Aroian, Kenneth E. Narva, Colin Berry
Software Mentions: 1
Published: over 8 years ago