Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Profiles
https://packages.ecosyste.ms/registries/pypi.org/packages/Profiles
Papers Mentioning Profiles 30
10.12688/wellcomeopenres.14306.1
CoverView: a sequence quality evaluation tool for next generation sequencing dataCited by: 7
Author(s): Márton Münz, Shazia Mahamdallie, Shawn Yost, Andrew Rimmer, Emma Poyastro-Pearson, Ann Strydom, Sheila Seal, Elise Ruark, Nazneen Rahman
Software Mentions: 8
Published: over 6 years ago
10.1371/journal.pone.0132798
Partial Hepatectomy Induced Long Noncoding RNA Inhibits Hepatocyte Proliferation during Liver RegenerationCited by: 20
Author(s): Lulu Huang, Sagar S. Damle, Sheri Booten, Priyam Singh, Mahyar Sabripour, Jeff Hsu, Minji Jo, Melanie Katz, Andy Watt, Christopher E. Hart, Susan M. Freier, Brett P. Monia, Shuling Guo
Software Mentions: 6
Published: over 9 years ago
10.1186/s12859-016-1440-8
TTCA: an R package for the identification of differentially expressed genes in time course microarray dataCited by: 15
Author(s): Marco Albrecht, Damian Stichel, Bettina Müller, Ruth Merkle, Carsten Sticht, Norbert Gretz, Ursula Klingmüller, Kai Breuhahn, Franziska Matthäus
Software Mentions: 5
Published: almost 8 years ago
10.1242/jcs.183103
Chromatibody, a novel non-invasive molecular tool to explore and manipulate chromatin in living cellsCited by: 32
Author(s): Denis Jullien, Julien Vignard, Yoann Fedor, Nicolas Béry, Aurélien Olichon, Michèle Crozatier, Marie Erard, Hervé Cassard, Bernard Ducommun, Bernard Salles, Gladys Mirey
Software Mentions: 3
Published: almost 9 years ago
10.1038/s41598-018-32925-x
Oleoylethanolamide treatment affects gut microbiota composition and the expression of intestinal cytokines in Peyer’s patches of miceCited by: 35
Author(s): Monica Di Paola, Elena Bonechi, Gustavo Provensi, Alessia Costa, Gerard Clarke, Clara Ballerini, Carlotta De Filippo, Maria Beatrice Passani
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-021-86466-x
Preliminary functional analysis of the subgingival microbiota of cats with periodontitis and feline chronic gingivostomatitisCited by: 7
Author(s): Marjory Xavier Rodrigues, Nadine Fiani, R.C. Bicalho, Santiago Peralta
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pntd.0008366
An interactive database for the investigation of high-density peptide microarray guided interaction patterns and antivenom cross-reactivityCited by: 10
Author(s): Kamille Elvstrøm Krause, Timothy Jenkins, Carina Skaarup, Mikael Engmark, Nicholas R. Casewell, Stuart Ainsworth, Bruno Lomonte, Julián Fernández, José Marı́a Gutiérrez, Ole Lund, Andreas Hougaard Laustsen
Software Mentions: 3
Published: over 4 years ago
10.1111/jcmm.13547
Humanization of fibroblast growth factor 1 single‐chain antibody and validation for its antitumorigenic efficacy in breast cancer and glioma cellsCited by: 11
Author(s): Xiaomin He, Shuyuan Du, Shiqian Gao, Jing‐Ying Chen, Ran‐Juan Cao, Zhenkai Xing, Alia Rizvi Syeda Kazim, Huali Yu, Qing‐Chuan Zheng, Xinen Zhu
Software Mentions: 2
Published: almost 7 years ago
10.2196/jmir.3137
The Use and Significance of a Research Networking SystemCited by: 13
Author(s): Maninder Kahlon, Leslie Yuan, John Daigre, Eric Meeks, Katie Nelson, Cynthia Piontkowski, Katja Reuter, Rachael Sak, Brian Turner, Griffin M Weber, Chatterjee Anirvan
Software Mentions: 2
Published: almost 11 years ago
10.1186/1471-2105-15-333
Network-based analysis of comorbidities risk during an infection: SARS and HIV case studiesCited by: 88
Author(s): Mohammad Ali Moni, Píetro Lió
Software Mentions: 2
Published: about 10 years ago
10.1038/srep11702
Homology modeling of DFG-in FMS-like tyrosine kinase 3 (FLT3) and structure-based virtual screening for inhibitor identificationCited by: 63
Author(s): Yi Yu Ke, Vivek Kumar Singh, Mohane Selvaraj Coumar, Yung Chang Hsu, Wen Chieh Wang, Jen Shin Song, Chun Hwa Chen, Wen Hsing Lin, Szu Huei Wu, Ju Wei Hsu, Chuan Shih, Hsing Pang Hsieh
Software Mentions: 1
Published: over 9 years ago
10.1038/srep29895
Engineering Factor Xa Inhibitor with Multiple Platelet-Binding Sites Facilitates its Platelet TargetingCited by: 4
Author(s): Yuyan Zhu, Ruyi Li, Yuan Lin, Mengyang Shui, Xiaoyan Liu, Huan Chen
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-017-02091-7
Design and evaluation of EphrinA1 mutants with cerebral protective effectCited by: 7
Author(s): Yuyan Zhu, Yuanqing Gao, Danping Zheng, Mengyang Shui, Kuai Yu, Xiaoyan Liu, Yuan Lin, Li Su, Wenxing Yang
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-019-54791-x
Computational STAT3 activity inference reveals its roles in the pancreatic tumor microenvironmentCited by: 6
Author(s): Evelien Schaafsma, Yiwei Yuan, Yanding Zhao, Chao Cheng
Software Mentions: 1
Published: about 5 years ago
10.1186/1742-4682-10-26
Is it possible to stabilize a thermophilic protein further using sequences and structures of mesophilic proteins: a theoretical case study concerning DgASCited by: 2
Author(s): Ming Liu, Hongqiu He, Jiguo Su
Software Mentions: 1
Published: over 11 years ago
10.1186/1742-4682-11-27
Herpes B virus gD interaction with its human receptor - an in silico analysis approachCited by: 4
Author(s): Lingke Li, Zheng-Liang Qiu, Yan Li, Feng Liang, Huahu Ye, Yongqin Cai, Wanfeng Guo, Yan Li, Junjie Yue
Software Mentions: 1
Published: over 10 years ago
10.1186/1476-072X-5-49
Cited by: 101Author(s): Brad Bell, Richard Hoskins, Linda Williams Pickle, Daniel Wartenberg
Software Mentions: 1
Published: almost 19 years ago
10.3390/ijerph15112533
Knowledge Management for Fostering Biostatistical Collaboration within a Research Network: The RTRN Case StudyCited by: 1
Author(s): Jae Eun Lee, Jung Hye Sung, Daniel F. Sarpong, Jimmy T. Efird, Paul B. Tchounwou, Elizabeth Ofili, Keith C. Norris
Software Mentions: 1
Published: about 6 years ago
10.3390/ijms20102568
Molecular Docking and Molecular Dynamics (MD) Simulation of Human Anti-Complement Factor H (CFH) Antibody Ab42 and CFH PolypeptideCited by: 23
Author(s): Bing Yang, Shujian Lin, Jianlin Ren, Tong Liu, Yueming Wang, Chengming Li, Wenwen Xu, Ying He, Wenwei Zheng, Zhao Jian, Xiaohui Yuan, Hua‐Xin Liao
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2105-12-S14-S5
Integrative analysis workflow for the structural and functional classification of C-type lectinsCited by: 17
Author(s): Geoffrey Koh, Ariana Low, Daren Poh, Yujian Yao, Say Kong Ng, Voon‐Kean Wong, Vincent Vagenende, Kong-Peng Lam, Dong-Yup Lee
Software Mentions: 1
Published: about 13 years ago
10.2196/jmir.3444
Finding Collaborators: Toward Interactive Discovery Tools for Research Network SystemsCited by: 3
Author(s): Charles Borromeo, Titus Schleyer, Michael J. Becich, Harry Hochheiser
Software Mentions: 1
Published: about 10 years ago
10.1186/1471-2105-9-S1-S14
Modelling the structures of G protein-coupled receptors aided by three-dimensional validationCited by: 10
Author(s): Siavoush Dastmalchi, W. Bret Church, Mitchell Morris
Software Mentions: 1
Published: almost 17 years ago
10.1186/s12896-016-0286-5
Characterization of an L-arabinose isomerase from Bacillus coagulans NL01 and its application for D-tagatose productionCited by: 31
Author(s): Wending Mei, Lu Wang, Ying Zang, Zhaojuan Zheng, Jia Ouyang
Software Mentions: 1
Published: over 8 years ago
10.3897/BDJ.9.e65023
The Atlas of Living Australia: History, current state and future directionsCited by: 17
Author(s): Lee Belbin, Elycia Wallis, Donald Hobern, André Zerger
Software Mentions: 1
Published: over 3 years ago
10.1186/1475-2859-9-43
Molecular cloning and biochemical characterization of a novel erythrose reductase from Candida magnoliae JH110Cited by: 33
Author(s): Dae-Hee Lee, Yeji Lee, Yeon‐Woo Ryu, Jin‐Ho Seo
Software Mentions: 1
Published: over 14 years ago
10.1038/cr.2018.15
Tamoxifen enhances stemness and promotes metastasis of ERα36+ breast cancer by upregulating ALDH1A1 in cancer cellsCited by: 95
Author(s): Qiang Wang, Jun Jiang, Guoguang Ying, Xiao Qing Xie, Xia Zhang, Wei Xu, Xuemin Zhang, Erwei Song, Hong Bu, Yi Ping, Yao Xiao, Bin Wang, Shilei Xu, Ze Xuan Yan, Yoshiaki Tai, Baoquan Hu, Xiaowei Qi, Yan Xia Wang, Zhi Cheng He, Yan Wang, Ji Ming Wang, Yinghui Cui, Feng Chen, Kun Meng, Zhaoyi Wang, Xiu Wu Bian
Software Mentions: 1
Published: almost 7 years ago
10.1186/s13072-019-0293-6
Crosstalk between chromatin structure, cohesin activity and transcriptionCited by: 17
Author(s): Douglas Maya-Miles, Eloísa Andújar, Mónica Pérez-Alegre, Marina Murillo-Pineda, Marta Barrientos-Moreno, María J. Cabello-Lobato, Elena Gómez-Marín, Macarena Morillo-Huesca, Félix Prado
Software Mentions: 1
Published: over 5 years ago
10.3389/fimmu.2021.642383
Schistosomiasis Drug Discovery in the Era of Automation and Artificial IntelligenceCited by: 11
Author(s): José Teófilo Moreira-Filho, Arthur C. Silva, Rafael Ferreira Dantas, Bárbara Figueira Gomes, Lauro R Souza Neto, J. Brandão-Neto, Raymond J. Owens, Nicholas Furnham, Bruno Junior Neves, Floriano Paes Silva, Carolina Horta Andrade
Software Mentions: 1
Published: over 3 years ago
10.3389/fpsyt.2019.00927
Development of a Psychological Intervention to Address Anxiety During Pregnancy in a Low-Income CountryCited by: 30
Author(s): Najia Atif, Huma Nazir, Shamsa Zafar, Rizwana Chaudhri, Maria Atiq, Luke C. Mullany, Armaan A. Rowther, Abid Malik, Pamela J. Surkan, Atıf Rahman
Software Mentions: 1
Published: almost 5 years ago
10.4103/0972-0707.66719
Comparative evaluation of surface characteristics of dentinal walls with and without using plastic finishing fileCited by: 7
Author(s): Smita Singh, Neeraj Nigam
Software Mentions: 1
Published: almost 15 years ago