pypi: skimage | Projects | Ecosyste.ms: Papers

10.15252/msb.202010108

Joint cell segmentation and cell type annotation for spatial transcriptomics
Cited by: 40
Author(s): Russell Littman, Zachary Hemminger, Robert T. Foreman, Douglas Arneson, Guanglin Zhang, Fernando Gómez‐Pinilla, Xia Yang, Roy Wollman
Software Mentions: 10
Published: over 3 years ago

10.15252/msb.20199071

Measuring glycolytic flux in single yeast cells with an orthogonal synthetic biosensor
Cited by: 30
Author(s): Francisca Monteiro, Georg Hubmann, Vakil Takhaveev, Silke R. Vedelaar, Justin Norder, Johan Hekelaar, Joana Saldida, Athanasios Litsios, Hein J. Wijma, Alexander Schmidt, Matthias Heinemann
Software Mentions: 8
Published: almost 5 years ago

10.1038/s41598-020-78777-2

Evolutionary design of optimal surface topographies for biomaterials
Cited by: 4
Author(s): Aliaksei Vasilevich, Aurélie Carlier, David A. Winkler, Shantanu Singh, Jan de Boer
Software Mentions: 7
Published: almost 4 years ago

10.1038/s42003-021-02181-3

Multiparametric biophysical profiling of red blood cells in malaria infection
Cited by: 9
Author(s): Shreya Deshmukh, Bikash Shakya, Anna Chen, Naside Gözde Durmus, Bryan Greenhouse, Elizabeth S. Egan, Utkan Demirci
Software Mentions: 6
Published: over 3 years ago

10.3389/fphys.2018.00388

Coupled Immunological and Biomechanical Model of Emphysema Progression
Cited by: 13
Author(s): Mario Ceresa, Andy L. Olivares, Jérôme Noailly, Miguel Ángel González Ballester
Software Mentions: 6
Published: over 6 years ago

10.1016/j.celrep.2018.10.073

Microanatomic Distribution of Myeloid Heme Oxygenase-1 Protects against Free Radical-Mediated Immunopathology in Human Tuberculosis
Cited by: 29
Author(s): Krishna C. Chinta, Md. Aejazur Rahman, Vikram Saini, Joel N. Glasgow, Vineel P. Reddy, Jeremie M. Lever, Shepherd Nhamoyebonde, Alasdair Leslie, Ryan M. Wells, Amie M. Traylor, Rajhmun Madansein, Gene P. Siegal, Veena B. Antony, Jessy Deshane, Gordon Wells, Kievershen Nargan, James F. George, Pratistadevi K. Ramdial, Anupam Agarwal, Adrie J. C. Steyn
Software Mentions: 6
Published: about 6 years ago

10.1128/mBio.03109-19

A Multiplex Fluidic Chip for Rapid Phenotypic Antibiotic Susceptibility Testing
Cited by: 16
Author(s): Pikkei Wistrand-Yuen, Christer Malmberg, Nikos Fatsis-Kavalopoulos, Moritz Lübke, Thomas Tängdén, Johan Kreuger
Software Mentions: 5
Published: over 4 years ago

10.3390/jcm10071430

Pre-Processing Method for Contouring the Uptake Levels of [18F] FDG for Enhanced Specificity of PET Imaging of Solitary Hypermetabolic Pulmonary Nodules
Cited by: 0
Author(s): Piotr Szumowski, Artur Szklarzewski, Łukasz Żukowski, Saeid Abdelrazek, Małgorzata Mojsak, Katarzyna Porębska, Ewa Sierko, Janusz Myśliwiec
Software Mentions: 4
Published: over 3 years ago

10.1534/g3.119.400757

Machine Learning Enables High-Throughput Phenotyping for Analyses of the Genetic Architecture of Bulliform Cell Patterning in Maize
Cited by: 9
Author(s): Pengfei Qiao, Lin Meng, Miguel Vasquez, Susanne Matschi, James Chamness, Matheus Baseggio, Laurie G. Smith, Mert R. Sabuncu, Michael A. Gore, Michael J. Scanlon
Software Mentions: 4
Published: almost 5 years ago

10.1155/2021/1102083

Classification Framework for Healthy Hairs and Alopecia Areata: A Machine Learning (ML) Approach
Cited by: 10
Author(s): Choudhary Sobhan Shakeel, Saad Jawaid Khan, Beenish Moalla Chaudhry, Syeda Fatima Aijaz, Umer Hassan
Software Mentions: 4
Published: over 3 years ago

10.1186/s13007-020-00612-6

High-throughput three-dimensional visualization of root system architecture of rice using X-ray computed tomography
Cited by: 63
Author(s): Shota Teramoto, Satoko Takayasu, Yuka Kitomi, Yumiko Arai‐Sanoh, Takanari Tanabata, Yusaku Uga
Software Mentions: 4
Published: over 4 years ago

10.1093/bioinformatics/btx404

NucliTrack: an integrated nuclei tracking application
Cited by: 23
Author(s): Sam Cooper, Alexis R. Barr, Robert C. Glen, Chris Bakal
Software Mentions: 3
Published: over 7 years ago

10.3389/fcell.2020.549451

Pex14p Phosphorylation Modulates Import of Citrate Synthase 2 Into Peroxisomes in Saccharomyces cerevisiae
Cited by: 17
Author(s): Andreas Schummer, Renate Maier, Shiran Gabay-Maskit, Tobias Hansen, Wignand W. D. Mühlhäuser, Ida Suppanz, Amir Fadel, Maya Schuldiner, Wolfgang Girzalsky, Silke Oeljeklaus, Einat Zalckvar, Ralf Erdmann, Bettina Warscheid
Software Mentions: 3
Published: about 4 years ago

10.1534/g3.119.400080

Variation in Filamentous Growth and Response to Quorum-Sensing Compounds in Environmental Isolates of<i>Saccharomyces cerevisiae</i>
Cited by: 14
Author(s): B. Adam Lenhart, Brianna Meeks, Helen A. Murphy
Software Mentions: 3
Published: over 5 years ago

10.3390/polym13142255

The Proposal and Necessity of the Numerical Description of Nano- and Microplastics’ Surfaces (Plastisphere)
Cited by: 3
Author(s): Agnieszka Dąbrowska, Marianna Gniadek, Piotr Machowski
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pntd.0009208

Co-circulation and misdiagnosis led to underestimation of the 2015–2017 Zika epidemic in the Americas
Cited by: 14
Author(s): Rachel J. Oidtman, Guido España, T. Alex Perkins
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0230856

Assessing alternative methods for unsupervised segmentation of urban vegetation in very high-resolution multispectral aerial imagery
Cited by: 8
Author(s): Allison Lassiter, Mayank Darbari
Software Mentions: 2
Published: over 4 years ago

10.3390/mps3010014

Analysis and Model of Cortical Slow Waves Acquired with Optical Techniques
Cited by: 7
Author(s): Marco Celotto, Chiara De Luca, Paolo Muratore, Anna Letizia Allegra Mascaro, Francesco S. Pavone, G. De Bonis, P. Paolucci
Software Mentions: 2
Published: almost 5 years ago

10.34133/2019/3285904

Precision Phenotyping Reveals Novel Loci for Quantitative Resistance to Septoria Tritici Blotch
Cited by: 30
Author(s): Steven Yates, Alexey Mikaberidze, Simon G. Krattinger, Michaël Abrouk, Andreas Hund, Kang Yu, Bruno Studer, Simone Fouché, Lukas Meile, Daniel Pereira, Petteri Karisto, Bruce A. McDonald
Software Mentions: 2
Published: almost 6 years ago

10.3390/s21144641

Real-World Marine Radar Datasets for Evaluating Target Tracking Methods
Cited by: 6
Author(s): Jaya Shradha Fowdur, Marcus Baum, Frank Heymann
Software Mentions: 1
Published: over 3 years ago

10.1016/j.celrep.2020.107681

Prophase-Specific Perinuclear Actin Coordinates Centrosome Separation and Positioning to Ensure Accurate Chromosome Segregation
Cited by: 21
Author(s): Tom Stiff, Fabio Echegaray Iturra, Harry Pink, Alex Herbert, Constantino Carlos Reyes-Aldasoro, Helfrid Hochegger
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0252429

Deep learning for discovering pathological continuum of crypts and evaluating therapeutic effects: An implication for in vivo preclinical study
Cited by: 0
Author(s): Dechao Shan, Jie Zheng, Alexander C. Klimowicz, Mark Panzenbeck, Zheng Liu, Di Feng
Software Mentions: 1
Published: over 3 years ago

10.3389/fncom.2020.00010

A Novel Approach for Fully Automatic Intra-Tumor Segmentation With 3D U-Net Architecture for Gliomas
Cited by: 55
Author(s): Ujjwal Baid, Sanjay N. Talbar, Swapnil Rane, Sudeep Gupta, Meenakshi Thakur, Aliasgar Moiyadi, Nilesh Sable, Mayuresh Akolkar, Abhishek Mahajan
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.55008

IP3 mediated global Ca2+ signals arise through two temporally and spatially distinct modes of Ca2+ release
Cited by: 31
Author(s): Jeffrey T. Lock, Ian Parker
Software Mentions: 1
Published: over 4 years ago

10.1002/acm2.13310

On the evaluation of mobile target trajectory between four‐dimensional computer tomography and four‐dimensional cone‐beam computer tomography
Cited by: 0
Author(s): Colton Baley, Neil Kirby, Timothy D. Wagner, Nikos Papanikolaou, Pamela Myers, Karl Rasmussen, Sotirios Stathakis, Daniel Saenz
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22168399

Image-Based Method to Quantify Decellularization of Tissue Sections
Cited by: 7
Author(s): Maria Narciso, Jorge Otero, Daniel Navajas, Ramón Farré, Isaac Almendros, Núria Gavara
Software Mentions: 1
Published: over 3 years ago

Ecosyste.ms: Papers

Projects: pypi: skimage

Papers Mentioning skimage 26